MD15G1156100.v1.1

Glyco_18

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
11598211 .. 11599995
1785 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1156100.v1.1.491

Sequence Viewer

Length: 1131 bp
ATGTCTTCCAAAACTACAACCCTTCCATTACTCCTTTCCGCCCTCCTTTTCCTTATCCAACTCAATGTCTCCGCCGGCCAAGCCGCGGTCAAGGGCGCCTACTGGTATTGGGACAGTGGACTTCCAGCCTCCAGCATAGATTCCACCCTCTTCACTCATCTTTTCTGTGCATTTGCTGACCTCAACGTCGACACGTACCAAGTCACAGTTTCTTCCTCTAACCAAGCACAATTCTCAAGCTTCACCCAAACAGTCCAACAAAACAACCCTTCTGTCAAAACCCTCTTGTCCATTGGAGGTGGTGGCGGTGCTGCCCTTGCAGACACATTCGCTGCAATGGCGAGCCAACCCGACCGGCGTAAGTCATTCATCGATTCCTCCATCAGTCTAGCTAGGTCATACAACTTCCATGGCCTCGACGTTGATTGGGAATATCCATCCACCACCACTCACATGACCAACTTCGGCACCCTTCTCACCGAATTGCGTGCAGCCGTGGCCAATGAGTCGCAGACATCTGGGAACACGGCATTGCTTTTAACCGCAGCTGTACATCGCTCAGCGGATTACTACACCATAAATTACCCCTTTGAGTCCATATCAAACAGTCTGGACTGGATCAACGTTATGGCTTACGACTTCTATGGCTCTGCCTGGGAGTCAAGCAGAGCCAACACTGGCCCACCTGCTGCGTTATACAATGCCACAGCTAGCCAAATTAACGGGAATGCCGGGATCACATCTTGGATTGGGGCAGGTGTGGCTGCCAACAAGATAGTCCTAGGCCTTCCGTTTTATGGCTACGCTTGGCGCTTGGTCAACGCCGATGACCATGGACTTTTTGCTCCGGCTGATGGACCGGCTAATGCCGGGACAGATGGGAGCATGGTTTACCACCAGATAAGGGATTTTATAAGCCAGAATGCGGCAGAGACGGTGTACAATGCGACGGTTGTAACAAACTATTGCTACTCCGGGACTACATGGATTGGGTACGATGATACGGAGAGTATCTCTGCCAAGGTTTCATATGCTAAGGAAGAGGCACTTCTTGGATACTTTGCTTGGCAAGTCAGTGGTGACGACAGCAATTGGGCTCTTTCTCAAACAGCTTCAACTACTTGGGGATGA

Protein Analysis

377

Amino Acids

40.39

Weight (kDa)

4.54

Isoelectric Point (pI)

28.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 43 - 361 3.2e-77 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 914
AarI CACCTGC 2 cut(s) 694, 746
AasI GACNNNNNNGTC 1 cut(s) 185
Acc36I ACCTGC 2 cut(s) 694, 746
AccB1I GGYRCC 2 cut(s) 95, 467
AccI GTMKAC 1 cut(s) 189
AccII CGCG 1 cut(s) 86
AciI CCGC 8 cut(s) 39, 72, 84, 86, 306, 543, 563, 926
AclI AACGTT 1 cut(s) 624
AclWI GGATC 2 cut(s) 626, 743
AcoI YGGCCR 2 cut(s) 76, 498
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 4 cut(s) 197, 552, 941, 995
AfiI CCNNNNNNNGG 5 cut(s) 85, 797, 854, 904, 925
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 1 cut(s) 1116
AjnI CCWGG 1 cut(s) 653
AluBI AGCT 5 cut(s) 240, 392, 548, 710, 1112
AluI AGCT 5 cut(s) 240, 392, 548, 710, 1112
Alw26I GTCTC 2 cut(s) 73, 926
AlwI GGATC 2 cut(s) 626, 743
AoxI GGCC 5 cut(s) 76, 412, 498, 679, 784
ApeKI GCWGC 6 cut(s) 311, 332, 491, 545, 689, 764
AspA2I CCTAGG 1 cut(s) 781
AspLEI GCGC 2 cut(s) 98, 813
AspS9I GGNCC 2 cut(s) 680, 857
AsuC2I CCSGG 3 cut(s) 733, 871, 976
AsuHPI GGTGA 3 cut(s) 235, 469, 1091
AsuNHI GCTAGC 1 cut(s) 710
AvaII GGWCC 1 cut(s) 857
AvrII CCTAGG 1 cut(s) 781
BalI TGGCCA 1 cut(s) 500
BanI GGYRCC 2 cut(s) 95, 467
BanII GRGCYC 1 cut(s) 1099
BbvI GCAGC 6 cut(s) 298, 319, 503, 557, 676, 751
BccI CCATC 4 cut(s) 389, 445, 848, 872
BceAI ACGGC 2 cut(s) 479, 543
BcgI CGANNNNNNTGC 2 cut(s) 470, 504
BciT130I CCWGG 1 cut(s) 655
BciVI GTATCC 1 cut(s) 1049
BcnI CCSGG 3 cut(s) 733, 871, 976
BcoDI GTCTC 2 cut(s) 73, 926
BfaI CTAG 4 cut(s) 389, 393, 711, 782
BfoI RGCGCY 2 cut(s) 99, 814
BfuAI ACCTGC 2 cut(s) 694, 746
BfuI GTATCC 1 cut(s) 1049
BisI GCNGC 8 cut(s) 84, 312, 333, 492, 546, 690, 765, 927
BlnI CCTAGG 1 cut(s) 781
BlpI GCTNAGC 1 cut(s) 559
BlsI GCNGC 8 cut(s) 85, 313, 334, 493, 547, 691, 766, 928
Bme1390I CCNGG 4 cut(s) 655, 733, 871, 976
Bme18I GGWCC 1 cut(s) 857
BmgT120I GGNCC 2 cut(s) 680, 857
BmiI GGNNCC 2 cut(s) 97, 469
BmrFI CCNGG 4 cut(s) 655, 733, 871, 976
BmtI GCTAGC 1 cut(s) 714
BplI GAGNNNNNCTC 2 cut(s) 998, 1030
BpmI CTGGAG 1 cut(s) 115
Bpu10I CCTNAGC 1 cut(s) 1035
Bpu1102I GCTNAGC 1 cut(s) 559
BpuEI CTTGAG 1 cut(s) 220
BpuMI CCSGG 3 cut(s) 733, 871, 976
Bsa29I ATCGAT 1 cut(s) 372
BsaAI YACGTR 1 cut(s) 195
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 7 cut(s) 84, 409, 495, 654, 781, 832, 1020
Bsc4I CCNNNNNNNGG 5 cut(s) 85, 797, 854, 904, 925
Bse118I RCCGGY 3 cut(s) 74, 354, 859
Bse1I ACTGG 3 cut(s) 107, 620, 682
Bse3DI GCAATG 2 cut(s) 342, 530
BseBI CCWGG 1 cut(s) 655
BseCI ATCGAT 1 cut(s) 372
BseDI CCNNGG 7 cut(s) 84, 409, 495, 654, 781, 832, 1020
BseGI GGATG 1 cut(s) 437
BseLI CCNNNNNNNGG 5 cut(s) 85, 797, 854, 904, 925
BseMI GCAATG 2 cut(s) 342, 530
BseMII CTCAG 1 cut(s) 573
BseNI ACTGG 3 cut(s) 107, 620, 682
BseXI GCAGC 6 cut(s) 298, 319, 503, 557, 676, 751
BsgI GTGCAG 1 cut(s) 510
Bsh1236I CGCG 1 cut(s) 86
Bsh1285I CGRYCG 1 cut(s) 355
BshFI GGCC 5 cut(s) 78, 414, 500, 681, 786
BshNI GGYRCC 2 cut(s) 95, 467
BshVI ATCGAT 1 cut(s) 372
BsiEI CGRYCG 1 cut(s) 355
BsiSI CCGG 7 cut(s) 75, 355, 732, 848, 860, 870, 975
BslFI GGGAC 3 cut(s) 125, 886, 991
BslI CCNNNNNNNGG 5 cut(s) 85, 797, 854, 904, 925
BsmAI GTCTC 2 cut(s) 73, 926
BsmBI CGTCTC 1 cut(s) 926
BsmFI GGGAC 3 cut(s) 125, 886, 991
BsmI GAATGC 2 cut(s) 733, 928
BsnI GGCC 5 cut(s) 78, 414, 500, 681, 786
Bsp1286I GDGCHC 1 cut(s) 1099
Bsp1407I TGTACA 2 cut(s) 550, 939
Bsp143I GATC 2 cut(s) 618, 735
Bsp1720I GCTNAGC 1 cut(s) 559
Bsp19I CCATGG 2 cut(s) 409, 832
BspACI CCGC 8 cut(s) 39, 72, 84, 86, 306, 543, 563, 926
BspANI GGCC 5 cut(s) 78, 414, 500, 681, 786
BspCNI CTCAG 1 cut(s) 572
BspDI ATCGAT 1 cut(s) 372
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 2 cut(s) 97, 469
BspMI ACCTGC 2 cut(s) 694, 746
BspOI GCTAGC 1 cut(s) 714
BspPI GGATC 2 cut(s) 626, 743
BspT107I GGYRCC 2 cut(s) 95, 467
BsrDI GCAATG 2 cut(s) 342, 530
BsrFI RCCGGY 3 cut(s) 74, 354, 859
BsrGI TGTACA 2 cut(s) 550, 939
BsrI ACTGG 3 cut(s) 107, 620, 682
BssAI RCCGGY 3 cut(s) 74, 354, 859
BssECI CCNNGG 7 cut(s) 84, 409, 495, 654, 781, 832, 1020
BssMI GATC 2 cut(s) 618, 735
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 4 cut(s) 409, 781, 832, 1020
Bst2UI CCWGG 1 cut(s) 655
Bst4CI ACNGT 6 cut(s) 116, 208, 253, 608, 937, 952
Bst6I CTCTTC 2 cut(s) 155, 1035
BstACI GRCGYC 1 cut(s) 96
BstAUI TGTACA 2 cut(s) 550, 939
BstBAI YACGTR 1 cut(s) 195
BstC8I GCNNGC 4 cut(s) 76, 343, 489, 712
BstDEI CTNAG 2 cut(s) 559, 1035
BstDSI CCRYGG 4 cut(s) 84, 409, 495, 832
BstF5I GGATG 1 cut(s) 437
BstFNI CGCG 1 cut(s) 86
BstH2I RGCGCY 2 cut(s) 99, 814
BstHHI GCGC 2 cut(s) 98, 813
BstKTI GATC 2 cut(s) 621, 738
BstMAI GTCTC 2 cut(s) 73, 926
BstMBI GATC 2 cut(s) 618, 735
BstMCI CGRYCG 1 cut(s) 355
BstMWI GCNNNNNNNGC 5 cut(s) 80, 317, 338, 497, 761
BstNI CCWGG 1 cut(s) 655
BstSCI CCNGG 4 cut(s) 653, 731, 869, 974
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 6 cut(s) 298, 319, 503, 557, 676, 751
Bsu15I ATCGAT 1 cut(s) 372
BsuI GTATCC 1 cut(s) 1049
BsuRI GGCC 5 cut(s) 78, 414, 500, 681, 786
BsuTUI ATCGAT 1 cut(s) 372
BtgI CCRYGG 4 cut(s) 84, 409, 495, 832
BtgZI GCGATG 1 cut(s) 539
BtsCI GGATG 1 cut(s) 437
BtsIMutI CAGTG 3 cut(s) 121, 675, 1081
BveI ACCTGC 2 cut(s) 694, 746
Cac8I GCNNGC 4 cut(s) 76, 343, 489, 712
CfoI GCGC 2 cut(s) 98, 813
Cfr10I RCCGGY 3 cut(s) 74, 354, 859
Cfr13I GGNCC 2 cut(s) 680, 857
Cfr42I CCGCGG 1 cut(s) 87
ClaI ATCGAT 1 cut(s) 372
Csp6I GTAC 4 cut(s) 196, 551, 940, 994
CviAII CATG 5 cut(s) 410, 454, 833, 886, 984
CviQI GTAC 4 cut(s) 196, 551, 940, 994
DdeI CTNAG 2 cut(s) 559, 1035
DinI GGCGCC 1 cut(s) 97
DpnI GATC 2 cut(s) 620, 737
DpnII GATC 2 cut(s) 618, 735
DrdI GACNNNNNNGTC 1 cut(s) 185
DseDI GACNNNNNNGTC 1 cut(s) 185
EaeI YGGCCR 2 cut(s) 76, 498
Eam1104I CTCTTC 2 cut(s) 155, 1035
EarI CTCTTC 2 cut(s) 155, 1035
EciI GGCGGA 2 cut(s) 28, 61
Eco130I CCWWGG 4 cut(s) 409, 781, 832, 1020
Eco147I AGGCCT 1 cut(s) 786
Eco24I GRGCYC 1 cut(s) 1099
Eco47I GGWCC 1 cut(s) 857
EcoRII CCWGG 1 cut(s) 653
EcoT14I CCWWGG 4 cut(s) 409, 781, 832, 1020
EcoT38I GRGCYC 1 cut(s) 1099
EgeI GGCGCC 1 cut(s) 97
EheI GGCGCC 1 cut(s) 97
ErhI CCWWGG 4 cut(s) 409, 781, 832, 1020
Esp3I CGTCTC 1 cut(s) 926
FaeI CATG 5 cut(s) 413, 457, 836, 889, 987
FalI AAGNNNNNCTT 2 cut(s) 1032, 1064
FaqI GGGAC 3 cut(s) 125, 886, 991
FatI CATG 5 cut(s) 409, 453, 832, 885, 983
FauNDI CATATG 1 cut(s) 1030
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 8 cut(s) 84, 312, 333, 492, 546, 690, 765, 927
FokI GGATG 1 cut(s) 424
FriOI GRGCYC 1 cut(s) 1099
Fsp4HI GCNGC 8 cut(s) 84, 312, 333, 492, 546, 690, 765, 927
FspBI CTAG 4 cut(s) 389, 393, 711, 782
GlaI GCGC 2 cut(s) 97, 812
GluI GCNGC 8 cut(s) 84, 312, 333, 492, 546, 690, 765, 927
GsuI CTGGAG 1 cut(s) 115
HaeII RGCGCY 2 cut(s) 99, 814
HaeIII GGCC 5 cut(s) 78, 414, 500, 681, 786
HapII CCGG 7 cut(s) 75, 355, 732, 848, 860, 870, 975
HhaI GCGC 2 cut(s) 98, 813
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 5 cut(s) 413, 457, 836, 889, 987
Hin6I GCGC 2 cut(s) 96, 811
HinP1I GCGC 2 cut(s) 96, 811
HincII GTYRAC 2 cut(s) 190, 820
HindII GTYRAC 2 cut(s) 190, 820
HindIII AAGCTT 1 cut(s) 238
HinfI GANTC 5 cut(s) 140, 374, 506, 593, 659
HpaII CCGG 7 cut(s) 75, 355, 732, 848, 860, 870, 975
HphI GGTGA 3 cut(s) 235, 469, 1091
Hpy166II GTNNAC 5 cut(s) 119, 190, 820, 892, 940
Hpy188III TCNNGA 1 cut(s) 611
Hpy8I GTNNAC 5 cut(s) 119, 190, 820, 892, 940
Hpy99I CGWCG 3 cut(s) 191, 422, 952
HpyAV CCTTC 4 cut(s) 32, 279, 482, 797
HpyCH4III ACNGT 6 cut(s) 116, 208, 253, 608, 937, 952
HpyCH4IV ACGT 4 cut(s) 186, 194, 420, 624
HpyCH4V TGCA 4 cut(s) 170, 320, 335, 491
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 317, 338, 497, 761
HpyF3I CTNAG 2 cut(s) 559, 1035
HpySE526I ACGT 4 cut(s) 186, 194, 420, 624
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 5 cut(s) 413, 457, 836, 889, 987
HspAI GCGC 2 cut(s) 96, 811
KasI GGCGCC 1 cut(s) 95
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
KspI CCGCGG 1 cut(s) 87
Kzo9I GATC 2 cut(s) 618, 735
LmnI GCTCC 2 cut(s) 850, 882
Lsp1109I GCAGC 6 cut(s) 298, 319, 503, 557, 676, 751
MaeI CTAG 4 cut(s) 389, 393, 711, 782
MaeII ACGT 4 cut(s) 186, 194, 420, 624
MaeIII GTNAC 3 cut(s) 202, 955, 1079
MalI GATC 2 cut(s) 620, 737
MboI GATC 2 cut(s) 618, 735
MboII GAAGA 3 cut(s) 142, 204, 1052
MfeI CAATTG 1 cut(s) 1090
MhlI GDGCHC 1 cut(s) 1099
MlsI TGGCCA 1 cut(s) 500
MluCI AATT 5 cut(s) 230, 482, 580, 717, 1090
MluNI TGGCCA 1 cut(s) 500
Mly113I GGCGCC 1 cut(s) 96
MlyI GAGTC 3 cut(s) 515, 602, 668
MmeI TCCRAC 2 cut(s) 82, 280
Mox20I TGGCCA 1 cut(s) 500
MroNI GCCGGC 1 cut(s) 74
MscI TGGCCA 1 cut(s) 500
MseI TTAA 2 cut(s) 539, 720
MslI CAYNNNNRTG 1 cut(s) 452
Msp20I TGGCCA 1 cut(s) 500
MspA1I CMGCKG 3 cut(s) 86, 548, 563
MspI CCGG 7 cut(s) 75, 355, 732, 848, 860, 870, 975
MspR9I CCNGG 4 cut(s) 655, 733, 871, 976
MunI CAATTG 1 cut(s) 1090
Mva1269I GAATGC 2 cut(s) 733, 928
MvaI CCWGG 1 cut(s) 655
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 5 cut(s) 80, 317, 338, 497, 761
NaeI GCCGGC 1 cut(s) 76
NarI GGCGCC 1 cut(s) 96
NciI CCSGG 3 cut(s) 733, 871, 976
NcoI CCATGG 2 cut(s) 409, 832
NdeI CATATG 1 cut(s) 1030
NdeII GATC 2 cut(s) 618, 735
NgoMIV GCCGGC 1 cut(s) 74
NheI GCTAGC 1 cut(s) 710
NlaIII CATG 5 cut(s) 413, 457, 836, 889, 987
NlaIV GGNNCC 2 cut(s) 97, 469
NmuCI GTSAC 2 cut(s) 202, 1079
PaqCI CACCTGC 2 cut(s) 694, 746
PceI AGGCCT 1 cut(s) 786
PctI GAATGC 2 cut(s) 733, 928
PdiI GCCGGC 1 cut(s) 76
PfeI GAWTC 2 cut(s) 140, 374
PfoI TCCNGGA 1 cut(s) 974
PkrI GCNGC 8 cut(s) 85, 313, 334, 493, 547, 691, 766, 928
PleI GAGTC 3 cut(s) 514, 601, 667
PluTI GGCGCC 1 cut(s) 99
PpsI GAGTC 3 cut(s) 514, 601, 667
Ppu21I YACGTR 1 cut(s) 195
PsiI TTATAA 1 cut(s) 914
Psp1406I AACGTT 1 cut(s) 624
Psp6I CCWGG 1 cut(s) 653
PspGI CCWGG 1 cut(s) 653
PspN4I GGNNCC 2 cut(s) 97, 469
PspPI GGNCC 2 cut(s) 680, 857
PvuII CAGCTG 1 cut(s) 548
RsaI GTAC 4 cut(s) 197, 552, 941, 995
RsaNI GTAC 4 cut(s) 196, 551, 940, 994
RseI CAYNNNNRTG 1 cut(s) 452
SacII CCGCGG 1 cut(s) 87
SalI GTCGAC 1 cut(s) 188
SaqAI TTAA 2 cut(s) 539, 720
SatI GCNGC 8 cut(s) 84, 312, 333, 492, 546, 690, 765, 927
Sau3AI GATC 2 cut(s) 618, 735
Sau96I GGNCC 2 cut(s) 680, 857
SchI GAGTC 3 cut(s) 515, 602, 668
ScrFI CCNGG 4 cut(s) 655, 733, 871, 976
SduI GDGCHC 1 cut(s) 1099
SfoI GGCGCC 1 cut(s) 97
Sfr303I CCGCGG 1 cut(s) 87
SgrBI CCGCGG 1 cut(s) 87
SinI GGWCC 1 cut(s) 857
SmiMI CAYNNNNRTG 1 cut(s) 452
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
Sse9I AATT 5 cut(s) 230, 482, 580, 717, 1090
SseBI AGGCCT 1 cut(s) 786
SsiI CCGC 8 cut(s) 39, 72, 84, 86, 306, 543, 563, 926
SspDI GGCGCC 1 cut(s) 95
SspMI CTAG 4 cut(s) 389, 393, 711, 782
StuI AGGCCT 1 cut(s) 786
StyD4I CCNGG 4 cut(s) 653, 731, 869, 974
StyI CCWWGG 4 cut(s) 409, 781, 832, 1020
TaaI ACNGT 6 cut(s) 116, 208, 253, 608, 937, 952
TaiI ACGT 4 cut(s) 189, 197, 423, 627
TaqI TCGA 3 cut(s) 189, 372, 417
TasI AATT 5 cut(s) 230, 482, 580, 717, 1090
TatI WGTACW 2 cut(s) 550, 939
TauI GCSGC 2 cut(s) 86, 929
TfiI GAWTC 2 cut(s) 140, 374
Tru1I TTAA 2 cut(s) 539, 720
Tru9I TTAA 2 cut(s) 539, 720
TscAI CASTG 3 cut(s) 121, 682, 1081
TseFI GTSAC 2 cut(s) 202, 1079
TseI GCWGC 6 cut(s) 311, 332, 491, 545, 689, 764
Tsp45I GTSAC 2 cut(s) 202, 1079
TspDTI ATGAA 2 cut(s) 358, 1017
TspGWI ACGGA 2 cut(s) 780, 1019
TspRI CASTG 3 cut(s) 121, 682, 1081
VpaK11BI GGWCC 1 cut(s) 857
XmaJI CCTAGG 1 cut(s) 781
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 4 cut(s) 389, 393, 711, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.