Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004690

Physical Location & Seq

Genomic Coordinates Forward (+)

10724387 .. 10725450

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G180800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGTCTCTTCCGGCCAAGCTGTGGTTAAAGGCGCTTACTGTCACCGTTACTTCCTCAAACTCAGCCCAATTCTCGAGCTTCACACAAACAGTCCAACAAAAAAACCCTTCTGTGAAAACCCTCTTGTCCATTGGTGGAGGAGGCAATGATACTATTGCAGACACCTTTGCTTCAATGGCAAGCCAACCCAGCAGGCGAAAATCATTCATTGACTCCTCCATTAACTTAGCCAGGTCCTACAACTTCCATGGTATTGACCTTGATTGGGAGTACCCGGACACCACCACTCACATGACCAACTTTGGCACCCTTCTCACTGAGCTGCGAGCTGCTGTGGCCAATGAGTCCCAGACATCTGGCAACACCGAATTGCTTTTAGCCGCTGCAGTATTTCGCTCTGCAGATTACTATACCATAAATTACCCCATTGAGTCCATATCAAACAGTTTGGACTGGATCAATGTAATGGCTTATGACTTCTATGGCTCTGCTTGGAACTCAAGCAGAGACAGAACTGGACCACCGGCTCCATTATACAACGCAACCGCTAGCCAGGTTAATGGGGATGCTGGCATCACATCTTGGGTTGAGGCAGGTTTGGGTGCGGATAAGATAGTGCTGGGCCTTCCATTTTATGGGTATGCATGGCGTTTGCTGAATGCTGATGAGCATGGCCTTTTTGCTCCGGCTGATGGACCGGCTGATGGACCGGCTATTAGGACAGATGGGAGCATAAACTACAAGGACTTACTGGACTTCATAAGCCAGAATGGGACACAGACAGTGTACAATGCGACGGTTGTTACAAACTACTGCTACTCTGGGACAACATGGATTGGCTATGACGACACACAGAGTATCTCTGCCAAGGTTTCATATGCTAAGCAAAAGGGGCTTCTTGGTTACTTCTCATGGCAAGTCAGTGGTGACGACAATAACTGGGCTCTTTCTCAAACAGGTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0006810 GO:0006887 GO:0006955 GO:0007586 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0008843 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0012505 GO:0016192 GO:0016787 GO:0016798 GO:0017144 GO:0030141 GO:0031410 GO:0031974 GO:0031982 GO:0031983 GO:0032501 GO:0032940 GO:0034774 GO:0035580 GO:0036230 GO:0042119 GO:0042581 GO:0042737 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0044237 GO:0044245 GO:0044248 GO:0044421 GO:0044422 GO:0044424 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046348 GO:0046903 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060205 GO:0070013 GO:0070820 GO:0071704 GO:0097367 GO:0097708 GO:0099503 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1904724

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

322

Amino Acids

34.9

Weight (kDa)

4.65

Isoelectric Point (pI)

30.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19720 AT4G19740 AT4G19750 AT4G19760 AT4G19770 AT4G19800 AT4G19810 AT4G19810 AT4G19820
fragaria_vesca	FvH4_1g01321 FvH4_1g01362 FvH4_1g01382
malus_domestica	MD02G1011100.v1.1 MD15G1156100.v1.1
prunus_persica	Prupe.4G180800_v2.0.a1 Prupe.7G258500_v2.0.a1 Prupe.7G259000_v2.0.a1
pyrus_communis	pycom02g01000
rosa_chinensis	RchiOBHm_Chr2g0086161
rosa_laevigata	RLG00000027969 RLG00000033389
rosa_multiflora	Rmu_co8454935.1_g000002 Rmu_sc0004510.1_g000010 Rmu_sc0004948.1_g000003 Rmu_sc0004948.1_g000021
rosa_roxburghii	Rroxscaffold_152G00434840
rosa_rugosa	Rorug01G0466300
rosa_samantha	Rh2AG016100 Rh2CG017000 Rh2DG018100
rosa_wichuraiana	Rw2G001390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	584
AccB1I	GGYRCC	1 cut(s)	305
AccB7I	CCANNNNNTGG	2 cut(s)	21, 635
AciI	CCGC	3 cut(s)	381, 546, 605
AclWI	GGATC	1 cut(s)	464
AcoI	YGGCCR	2 cut(s)	12, 336
AfaI	GTAC	2 cut(s)	272, 788
AfiI	CCNNNNNNNGG	5 cut(s)	21, 265, 635, 692, 704
AgsI	TTSAA	1 cut(s)	174
AjnI	CCWGG	2 cut(s)	230, 552
AluBI	AGCT	4 cut(s)	19, 78, 322, 329
AluI	AGCT	4 cut(s)	19, 78, 322, 329
Alw26I	GTCTC	2 cut(s)	9, 501
AlwI	GGATC	1 cut(s)	464
Ama87I	CYCGRG	1 cut(s)	73
AoxI	GGCC	4 cut(s)	12, 336, 622, 673
ApeKI	GCWGC	3 cut(s)	322, 329, 383
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	5 cut(s)	234, 518, 622, 695, 707
AsuC2I	CCSGG	1 cut(s)	275
AsuHPI	GGTGA	2 cut(s)	34, 938
AsuNHI	GCTAGC	1 cut(s)	548
AvaI	CYCGRG	1 cut(s)	73
AvaII	GGWCC	4 cut(s)	234, 518, 695, 707
BalI	TGGCCA	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	946
BbvI	GCAGC	3 cut(s)	309, 316, 370
BccI	CCATC	3 cut(s)	686, 698, 719
BciT130I	CCWGG	2 cut(s)	232, 554
BcnI	CCSGG	1 cut(s)	275
BcoDI	GTCTC	2 cut(s)	9, 501
BfaI	CTAG	1 cut(s)	549
BfmI	CTRYAG	2 cut(s)	384, 399
BfoI	RGCGCY	1 cut(s)	35
BfuAI	ACCTGC	1 cut(s)	584
BisI	GCNGC	4 cut(s)	323, 330, 381, 384
BlpI	GCTNAGC	1 cut(s)	882
BlsI	GCNGC	4 cut(s)	324, 331, 382, 385
Bme1390I	CCNGG	3 cut(s)	232, 275, 554
Bme18I	GGWCC	4 cut(s)	234, 518, 695, 707
BmeT110I	CYCGRG	1 cut(s)	73
BmgT120I	GGNCC	5 cut(s)	234, 518, 622, 695, 707
BmiI	GGNNCC	2 cut(s)	307, 528
BmrFI	CCNGG	3 cut(s)	232, 275, 554
BmrI	ACTGGG	1 cut(s)	949
BmsI	GCATC	2 cut(s)	556, 582
BmtI	GCTAGC	1 cut(s)	552
BmuI	ACTGGG	1 cut(s)	949
Bpu1102I	GCTNAGC	1 cut(s)	882
BpuEI	CTTGAG	1 cut(s)	484
BpuMI	CCSGG	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	247, 867
Bsc4I	CCNNNNNNNGG	5 cut(s)	21, 265, 635, 692, 704
Bse118I	RCCGGY	3 cut(s)	523, 697, 709
Bse1I	ACTGG	4 cut(s)	458, 520, 756, 944
Bse3DI	GCAATG	1 cut(s)	151
BseBI	CCWGG	2 cut(s)	232, 554
BseDI	CCNNGG	2 cut(s)	247, 867
BseGI	GGATG	1 cut(s)	571
BseLI	CCNNNNNNNGG	5 cut(s)	21, 265, 635, 692, 704
BseMI	GCAATG	1 cut(s)	151
BseMII	CTCAG	2 cut(s)	75, 309
BseNI	ACTGG	4 cut(s)	458, 520, 756, 944
BseRI	GAGGAG	2 cut(s)	153, 205
BseXI	GCAGC	3 cut(s)	309, 316, 370
BseYI	CCCAGC	2 cut(s)	188, 619
BshFI	GGCC	4 cut(s)	14, 338, 624, 675
BshNI	GGYRCC	1 cut(s)	305
BsiHKCI	CYCGRG	1 cut(s)	73
BsiSI	CCGG	6 cut(s)	11, 275, 524, 686, 698, 710
BslFI	GGGAC	3 cut(s)	331, 787, 838
BslI	CCNNNNNNNGG	5 cut(s)	21, 265, 635, 692, 704
BsmAI	GTCTC	2 cut(s)	9, 501
BsmFI	GGGAC	3 cut(s)	331, 787, 838
BsmI	GAATGC	1 cut(s)	664
BsnI	GGCC	4 cut(s)	14, 338, 624, 675
BsoBI	CYCGRG	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	946
Bsp1407I	TGTACA	1 cut(s)	786
Bsp143I	GATC	1 cut(s)	456
Bsp1720I	GCTNAGC	1 cut(s)	882
Bsp19I	CCATGG	1 cut(s)	247
BspACI	CCGC	3 cut(s)	381, 546, 605
BspANI	GGCC	4 cut(s)	14, 338, 624, 675
BspCNI	CTCAG	2 cut(s)	74, 310
BspLI	GGNNCC	2 cut(s)	307, 528
BspMAI	CTGCAG	2 cut(s)	388, 403
BspMI	ACCTGC	1 cut(s)	584
BspOI	GCTAGC	1 cut(s)	552
BspPI	GGATC	1 cut(s)	464
BspT107I	GGYRCC	1 cut(s)	305
BsrDI	GCAATG	1 cut(s)	151
BsrFI	RCCGGY	3 cut(s)	523, 697, 709
BsrGI	TGTACA	1 cut(s)	786
BsrI	ACTGG	4 cut(s)	458, 520, 756, 944
BssAI	RCCGGY	3 cut(s)	523, 697, 709
BssECI	CCNNGG	2 cut(s)	247, 867
BssMI	GATC	1 cut(s)	456
BssT1I	CCWWGG	2 cut(s)	247, 867
Bst2UI	CCWGG	2 cut(s)	232, 554
Bst4CI	ACNGT	6 cut(s)	40, 46, 91, 446, 784, 799
Bst6I	CTCTTC	1 cut(s)	12
BstAUI	TGTACA	1 cut(s)	786
BstC8I	GCNNGC	5 cut(s)	181, 194, 327, 550, 571
BstDEI	CTNAG	4 cut(s)	61, 226, 318, 882
BstDSI	CCRYGG	1 cut(s)	247
BstF5I	GGATG	1 cut(s)	571
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	1 cut(s)	459
BstMAI	GTCTC	2 cut(s)	9, 501
BstMBI	GATC	1 cut(s)	456
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 189, 335, 892
BstNI	CCWGG	2 cut(s)	232, 554
BstSCI	CCNGG	3 cut(s)	230, 273, 552
BstSFI	CTRYAG	2 cut(s)	384, 399
BstV1I	GCAGC	3 cut(s)	309, 316, 370
BstXI	CCANNNNNNTGG	2 cut(s)	356, 560
BsuRI	GGCC	4 cut(s)	14, 338, 624, 675
BtgI	CCRYGG	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	571
BtsIMutI	CAGTG	3 cut(s)	315, 789, 928
BveI	ACCTGC	1 cut(s)	584
Cac8I	GCNNGC	5 cut(s)	181, 194, 327, 550, 571
CfoI	GCGC	1 cut(s)	34
Cfr10I	RCCGGY	3 cut(s)	523, 697, 709
Cfr13I	GGNCC	5 cut(s)	234, 518, 622, 695, 707
Csp6I	GTAC	2 cut(s)	271, 787
CviAII	CATG	6 cut(s)	248, 292, 645, 671, 831, 912
CviQI	GTAC	2 cut(s)	271, 787
DdeI	CTNAG	4 cut(s)	61, 226, 318, 882
DpnI	GATC	1 cut(s)	458
DpnII	GATC	1 cut(s)	456
EaeI	YGGCCR	2 cut(s)	12, 336
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco130I	CCWWGG	2 cut(s)	247, 867
Eco24I	GRGCYC	1 cut(s)	946
Eco47I	GGWCC	4 cut(s)	234, 518, 695, 707
Eco88I	CYCGRG	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	234
EcoRII	CCWGG	2 cut(s)	230, 552
EcoT14I	CCWWGG	2 cut(s)	247, 867
EcoT22I	ATGCAT	1 cut(s)	646
EcoT38I	GRGCYC	1 cut(s)	946
ErhI	CCWWGG	2 cut(s)	247, 867
FaeI	CATG	6 cut(s)	251, 295, 648, 674, 834, 915
FaqI	GGGAC	3 cut(s)	331, 787, 838
FatI	CATG	6 cut(s)	247, 291, 644, 670, 830, 911
FauNDI	CATATG	1 cut(s)	877
Fnu4HI	GCNGC	4 cut(s)	323, 330, 381, 384
FokI	GGATG	1 cut(s)	578
FriOI	GRGCYC	1 cut(s)	946
Fsp4HI	GCNGC	4 cut(s)	323, 330, 381, 384
FspBI	CTAG	1 cut(s)	549
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	4 cut(s)	323, 330, 381, 384
GsaI	CCCAGC	2 cut(s)	192, 623
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	4 cut(s)	14, 338, 624, 675
HapII	CCGG	6 cut(s)	11, 275, 524, 686, 698, 710
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	6 cut(s)	251, 295, 648, 674, 834, 915
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	3 cut(s)	212, 344, 431
HpaII	CCGG	6 cut(s)	11, 275, 524, 686, 698, 710
HphI	GGTGA	2 cut(s)	34, 938
Hpy166II	GTNNAC	1 cut(s)	787
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	787
Hpy99I	CGWCG	1 cut(s)	799
HpyAV	CCTTC	3 cut(s)	117, 320, 635
HpyCH4III	ACNGT	6 cut(s)	40, 46, 91, 446, 784, 799
HpyCH4V	TGCA	4 cut(s)	158, 386, 401, 644
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 189, 335, 892
HpyF3I	CTNAG	4 cut(s)	61, 226, 318, 882
Hsp92II	CATG	6 cut(s)	251, 295, 648, 674, 834, 915
HspAI	GCGC	1 cut(s)	32
Kzo9I	GATC	1 cut(s)	456
LmnI	GCTCC	3 cut(s)	532, 688, 729
Lsp1109I	GCAGC	3 cut(s)	309, 316, 370
LweI	GCATC	2 cut(s)	556, 582
MaeI	CTAG	1 cut(s)	549
MaeIII	GTNAC	5 cut(s)	40, 46, 802, 902, 926
MalI	GATC	1 cut(s)	458
MboI	GATC	1 cut(s)	456
MhlI	GDGCHC	1 cut(s)	946
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	3 cut(s)	68, 368, 418
MluNI	TGGCCA	1 cut(s)	338
MlyI	GAGTC	3 cut(s)	206, 353, 440
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	6 cut(s)	64, 131, 131, 134, 226, 583
Mox20I	TGGCCA	1 cut(s)	338
Mph1103I	ATGCAT	1 cut(s)	646
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	3 cut(s)	26, 222, 558
MslI	CAYNNNNRTG	1 cut(s)	290
Msp20I	TGGCCA	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	6 cut(s)	11, 275, 524, 686, 698, 710
MspR9I	CCNGG	3 cut(s)	232, 275, 554
Mva1269I	GAATGC	1 cut(s)	664
MvaI	CCWGG	2 cut(s)	232, 554
MwoI	GCNNNNNNNGC	4 cut(s)	176, 189, 335, 892
NciI	CCSGG	1 cut(s)	275
NcoI	CCATGG	1 cut(s)	247
NdeI	CATATG	1 cut(s)	877
NdeII	GATC	1 cut(s)	456
NheI	GCTAGC	1 cut(s)	548
NlaIII	CATG	6 cut(s)	251, 295, 648, 674, 834, 915
NlaIV	GGNNCC	2 cut(s)	307, 528
NmuCI	GTSAC	2 cut(s)	40, 926
NsiI	ATGCAT	1 cut(s)	646
PaeR7I	CTCGAG	1 cut(s)	73
PctI	GAATGC	1 cut(s)	664
PflMI	CCANNNNNTGG	2 cut(s)	21, 635
PkrI	GCNGC	4 cut(s)	324, 331, 382, 385
PleI	GAGTC	3 cut(s)	206, 352, 439
PpsI	GAGTC	3 cut(s)	206, 352, 439
PpuMI	RGGWCCY	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	234
Psp6I	CCWGG	2 cut(s)	230, 552
PspFI	CCCAGC	2 cut(s)	188, 619
PspGI	CCWGG	2 cut(s)	230, 552
PspN4I	GGNNCC	2 cut(s)	307, 528
PspPI	GGNCC	5 cut(s)	234, 518, 622, 695, 707
PspPPI	RGGWCCY	1 cut(s)	234
PstI	CTGCAG	2 cut(s)	388, 403
RsaI	GTAC	2 cut(s)	272, 788
RsaNI	GTAC	2 cut(s)	271, 787
RseI	CAYNNNNRTG	1 cut(s)	290
SaqAI	TTAA	3 cut(s)	26, 222, 558
SatI	GCNGC	4 cut(s)	323, 330, 381, 384
Sau3AI	GATC	1 cut(s)	456
Sau96I	GGNCC	5 cut(s)	234, 518, 622, 695, 707
SchI	GAGTC	3 cut(s)	206, 353, 440
ScrFI	CCNGG	3 cut(s)	232, 275, 554
SduI	GDGCHC	1 cut(s)	946
SfaNI	GCATC	2 cut(s)	556, 582
SfcI	CTRYAG	2 cut(s)	384, 399
Sfr274I	CTCGAG	1 cut(s)	73
SinI	GGWCC	4 cut(s)	234, 518, 695, 707
SlaI	CTCGAG	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	290
SmlI	CTYRAG	2 cut(s)	73, 499
SmoI	CTYRAG	2 cut(s)	73, 499
Sse9I	AATT	3 cut(s)	68, 368, 418
SsiI	CCGC	3 cut(s)	381, 546, 605
SspMI	CTAG	1 cut(s)	549
StyD4I	CCNGG	3 cut(s)	230, 273, 552
StyI	CCWWGG	2 cut(s)	247, 867
TaaI	ACNGT	6 cut(s)	40, 46, 91, 446, 784, 799
TaqI	TCGA	1 cut(s)	74
TasI	AATT	3 cut(s)	68, 368, 418
TatI	WGTACW	1 cut(s)	786
TauI	GCSGC	1 cut(s)	383
Tru1I	TTAA	3 cut(s)	26, 222, 558
Tru9I	TTAA	3 cut(s)	26, 222, 558
TscAI	CASTG	3 cut(s)	322, 789, 928
TseFI	GTSAC	2 cut(s)	40, 926
TseI	GCWGC	3 cut(s)	322, 329, 383
Tsp45I	GTSAC	2 cut(s)	40, 926
TspDTI	ATGAA	3 cut(s)	196, 748, 864
TspRI	CASTG	3 cut(s)	322, 789, 928
Van91I	CCANNNNNTGG	2 cut(s)	21, 635
VpaK11BI	GGWCC	4 cut(s)	234, 518, 695, 707
XhoI	CTCGAG	1 cut(s)	73
XspI	CTAG	1 cut(s)	549
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.