Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004690

Physical Location & Seq

Genomic Coordinates Reverse (-)

10753310 .. 10754202

Gene Structure 893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G19770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCAAGTAGCTCCTACGGTAGGAAATCATTCATTCTGTCTACAATCTCCATTGCTAGGTCGTACGGCTTCGATGGCCTCGACCTAGACTGGGAGTACCCGAGAAACGCGGCAGAGATGAGCGATTTCGCTGAGCTACTGAAAGAATGGCGATACGCCGTTCAGGGAGAGGCCTATAGCAGCGAATTACCGGTTTTGATCTTGACCGCTACGGTTTACTACTCCTCCAATTACAATGGGGTAGTGTACCCTGTTAAGTTCATTTCCGAATTATTGGATTGGGTTAATATTAAGGCTTATGATTTTTACGGACCGGGTTGTACCGAAGTTACAGGTCCACCCGCCGCTCTGTATCTTCAATCCGACGGTCCAAGTGGAGACTCAGGCGTGAAGGACTGGATTGATGCCGGACTTCCTGCGGAGAAAGCAGTGTTAGGGTTTCCATACTATGGCTGGGCCTGGACTCTCGCAGACCCCAAGAATCACGGATATTACGTAGACACCACTGGACCAGCGATATCAGATGACGGTGAGATCAGTTACAGTCAGTTAAAGACGTGGATAGTAGATAACAAAGCGACGACGGTGCATGATAACATAGTTATCGGAGACTATTGCTACGCCGGGACAACTTGGATCGGGTACGACAGTGAGGAGAGCATCGTCACCAAAGTGATATACGCTAAGCAGAAGGGTCTGCTTGGTTACTTCTCGTGGCAAGTTGGAGGTGACGACAAATCGGAACTCTCAAGTGCAGGTTCGTCTCCTTACCATATACTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0006950 GO:0006970 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0008843 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0016787 GO:0016798 GO:0017144 GO:0030312 GO:0033993 GO:0035885 GO:0042221 GO:0042737 GO:0043170 GO:0044237 GO:0044248 GO:0044464 GO:0046348 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0097367 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

261

Amino Acids

28.79

Weight (kDa)

4.41

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	1 - 244	2.8e-53	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19720 AT4G19740 AT4G19750 AT4G19760 AT4G19770 AT4G19800 AT4G19810 AT4G19810 AT4G19820
fragaria_vesca	FvH4_1g01321 FvH4_1g01362 FvH4_1g01382
malus_domestica	MD02G1011100.v1.1 MD15G1156100.v1.1
prunus_persica	Prupe.4G180800_v2.0.a1 Prupe.7G258500_v2.0.a1 Prupe.7G259000_v2.0.a1
pyrus_communis	pycom02g01000
rosa_chinensis	RchiOBHm_Chr2g0086161
rosa_laevigata	RLG00000027969 RLG00000033389
rosa_multiflora	Rmu_co8454935.1_g000002 Rmu_sc0004510.1_g000010 Rmu_sc0004948.1_g000003 Rmu_sc0004948.1_g000021
rosa_roxburghii	Rroxscaffold_152G00434840
rosa_rugosa	Rorug01G0466300
rosa_samantha	Rh2AG016100 Rh2CG017000 Rh2DG018100
rosa_wichuraiana	Rw2G001390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	746
AccB7I	CCANNNNNTGG	1 cut(s)	449
AccBSI	CCGCTC	1 cut(s)	347
AccI	GTMKAC	2 cut(s)	41, 498
AccII	CGCG	1 cut(s)	110
AciI	CCGC	5 cut(s)	110, 207, 342, 345, 419
AclWI	GGATC	1 cut(s)	644
AfaI	GTAC	5 cut(s)	65, 98, 248, 322, 644
AfiI	CCNNNNNNNGG	4 cut(s)	21, 57, 91, 449
AgeI	ACCGGT	1 cut(s)	190
AgsI	TTSAA	1 cut(s)	359
AjiI	CACGTC	1 cut(s)	558
AjnI	CCWGG	1 cut(s)	458
AleI	CACNNNNGTG	1 cut(s)	671
AluBI	AGCT	2 cut(s)	12, 136
AluI	AGCT	2 cut(s)	12, 136
Alw26I	GTCTC	3 cut(s)	372, 603, 768
AlwI	GGATC	1 cut(s)	644
Ama87I	CYCGRG	1 cut(s)	100
AoxI	GGCC	3 cut(s)	76, 171, 456
ApeKI	GCWGC	1 cut(s)	180
AsiGI	ACCGGT	1 cut(s)	190
Asp700I	GAANNNNTTC	1 cut(s)	29
AspS9I	GGNCC	5 cut(s)	311, 335, 368, 456, 509
AsuC2I	CCSGG	2 cut(s)	315, 625
AsuHPI	GGTGA	3 cut(s)	542, 658, 740
AvaI	CYCGRG	1 cut(s)	100
AvaII	GGWCC	4 cut(s)	311, 335, 368, 509
BaeI	ACNNNNGTAYC	2 cut(s)	634, 667
BauI	CACGAG	1 cut(s)	712
BbvI	GCAGC	1 cut(s)	192
BccI	CCATC	1 cut(s)	68
BceAI	ACGGC	2 cut(s)	82, 143
BcgI	CGANNNNNNTGC	2 cut(s)	568, 602
BciT130I	CCWGG	1 cut(s)	460
BcnI	CCSGG	2 cut(s)	315, 625
BcoDI	GTCTC	3 cut(s)	372, 603, 768
BfaI	CTAG	2 cut(s)	57, 86
BfmI	CTRYAG	1 cut(s)	175
BfuAI	ACCTGC	1 cut(s)	746
BisI	GCNGC	3 cut(s)	111, 181, 345
BlpI	GCTNAGC	2 cut(s)	132, 684
BlsI	GCNGC	3 cut(s)	112, 182, 346
Bme1390I	CCNGG	3 cut(s)	315, 460, 625
Bme18I	GGWCC	4 cut(s)	311, 335, 368, 509
BmeT110I	CYCGRG	1 cut(s)	100
BmgBI	CACGTC	1 cut(s)	558
BmgT120I	GGNCC	5 cut(s)	311, 335, 368, 456, 509
BmrFI	CCNGG	3 cut(s)	315, 460, 625
BmrI	ACTGGG	1 cut(s)	100
BmsI	GCATC	2 cut(s)	394, 669
BmuI	ACTGGG	1 cut(s)	100
Bpu1102I	GCTNAGC	2 cut(s)	132, 684
BpuEI	CTTGAG	1 cut(s)	733
BpuMI	CCSGG	2 cut(s)	315, 625
BsaAI	YACGTR	1 cut(s)	496
BsaWI	WCCGGW	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	4 cut(s)	21, 57, 91, 449
Bse118I	RCCGGY	1 cut(s)	190
Bse1I	ACTGG	3 cut(s)	95, 401, 511
Bse3DI	GCAATG	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	460
BseLI	CCNNNNNNNGG	4 cut(s)	21, 57, 91, 449
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	2 cut(s)	123, 396
BseNI	ACTGG	3 cut(s)	95, 401, 511
BseRI	GAGGAG	2 cut(s)	214, 668
BseXI	GCAGC	1 cut(s)	192
BseYI	CCCAGC	1 cut(s)	453
BsgI	GTGCAG	1 cut(s)	774
Bsh1236I	CGCG	1 cut(s)	110
BshFI	GGCC	3 cut(s)	78, 173, 458
BshTI	ACCGGT	1 cut(s)	190
BsiHKCI	CYCGRG	1 cut(s)	100
BsiSI	CCGG	4 cut(s)	191, 314, 408, 624
BsiWI	CGTACG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	640
BslI	CCNNNNNNNGG	4 cut(s)	21, 57, 91, 449
BsmAI	GTCTC	3 cut(s)	372, 603, 768
BsmBI	CGTCTC	1 cut(s)	768
BsmFI	GGGAC	1 cut(s)	640
BsnI	GGCC	3 cut(s)	78, 173, 458
BsoBI	CYCGRG	1 cut(s)	100
Bsp143I	GATC	3 cut(s)	198, 534, 636
Bsp1720I	GCTNAGC	2 cut(s)	132, 684
BspACI	CCGC	5 cut(s)	110, 207, 342, 345, 419
BspANI	GGCC	3 cut(s)	78, 173, 458
BspCNI	CTCAG	2 cut(s)	124, 395
BspFNI	CGCG	1 cut(s)	110
BspMI	ACCTGC	1 cut(s)	746
BspPI	GGATC	1 cut(s)	644
BsrBI	CCGCTC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	190
BsrI	ACTGG	3 cut(s)	95, 401, 511
BssAI	RCCGGY	1 cut(s)	190
BssMI	GATC	3 cut(s)	198, 534, 636
BssSI	CACGAG	1 cut(s)	712
Bst2BI	CACGAG	1 cut(s)	712
Bst2UI	CCWGG	1 cut(s)	460
Bst4CI	ACNGT	7 cut(s)	20, 214, 368, 530, 545, 586, 650
BstBAI	YACGTR	1 cut(s)	496
BstDEI	CTNAG	3 cut(s)	132, 382, 684
BstENI	CCTNNNNNAGG	1 cut(s)	19
BstFNI	CGCG	1 cut(s)	110
BstKTI	GATC	3 cut(s)	201, 537, 639
BstMAI	GTCTC	3 cut(s)	372, 603, 768
BstMBI	GATC	3 cut(s)	198, 534, 636
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 425
BstNI	CCWGG	1 cut(s)	460
BstSCI	CCNGG	3 cut(s)	313, 458, 623
BstSFI	CTRYAG	1 cut(s)	175
BstSNI	TACGTA	1 cut(s)	496
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	1 cut(s)	192
BsuRI	GGCC	3 cut(s)	78, 173, 458
BtrI	CACGTC	1 cut(s)	558
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	3 cut(s)	435, 504, 655
BveI	ACCTGC	1 cut(s)	746
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	5 cut(s)	311, 335, 368, 456, 509
CpoI	CGGWCCG	1 cut(s)	311
Csp6I	GTAC	5 cut(s)	64, 97, 247, 321, 643
CspAI	ACCGGT	1 cut(s)	190
CspI	CGGWCCG	1 cut(s)	311
CviAII	CATG	1 cut(s)	590
CviJI	RGCY	8 cut(s)	12, 69, 78, 136, 173, 296, 453, 458
CviKI_1	RGCY	8 cut(s)	12, 69, 78, 136, 173, 296, 453, 458
CviQI	GTAC	5 cut(s)	64, 97, 247, 321, 643
DdeI	CTNAG	3 cut(s)	132, 382, 684
DpnI	GATC	3 cut(s)	200, 536, 638
DpnII	GATC	3 cut(s)	198, 534, 636
Eco105I	TACGTA	1 cut(s)	496
Eco147I	AGGCCT	1 cut(s)	173
Eco32I	GATATC	1 cut(s)	519
Eco47I	GGWCC	4 cut(s)	311, 335, 368, 509
Eco88I	CYCGRG	1 cut(s)	100
EcoNI	CCTNNNNNAGG	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	458
EcoRV	GATATC	1 cut(s)	519
Esp3I	CGTCTC	1 cut(s)	768
FaeI	CATG	1 cut(s)	593
FaiI	YATR	9 cut(s)	177, 300, 445, 450, 591, 599, 679, 774, 776
FaqI	GGGAC	1 cut(s)	640
FatI	CATG	1 cut(s)	589
FauI	CCCGC	1 cut(s)	349
FblI	GTMKAC	2 cut(s)	41, 498
Fnu4HI	GCNGC	3 cut(s)	111, 181, 345
Fsp4HI	GCNGC	3 cut(s)	111, 181, 345
FspBI	CTAG	2 cut(s)	57, 86
GluI	GCNGC	3 cut(s)	111, 181, 345
GsaI	CCCAGC	1 cut(s)	457
HaeIII	GGCC	3 cut(s)	78, 173, 458
HapII	CCGG	4 cut(s)	191, 314, 408, 624
Hin1II	CATG	1 cut(s)	593
HinfI	GANTC	3 cut(s)	380, 463, 481
HpaII	CCGG	4 cut(s)	191, 314, 408, 624
HphI	GGTGA	3 cut(s)	542, 658, 740
Hpy166II	GTNNAC	5 cut(s)	42, 217, 247, 338, 499
Hpy188I	TCNGA	5 cut(s)	268, 364, 523, 608, 742
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	5 cut(s)	42, 217, 247, 338, 499
Hpy99I	CGWCG	3 cut(s)	368, 583, 586
HpyAV	CCTTC	2 cut(s)	385, 685
HpyCH4III	ACNGT	7 cut(s)	20, 214, 368, 530, 545, 586, 650
HpyCH4IV	ACGT	2 cut(s)	495, 557
HpyCH4V	TGCA	2 cut(s)	589, 755
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 425
HpyF3I	CTNAG	3 cut(s)	132, 382, 684
HpySE526I	ACGT	2 cut(s)	495, 557
Hsp92II	CATG	1 cut(s)	593
Kzo9I	GATC	3 cut(s)	198, 534, 636
LmnI	GCTCC	1 cut(s)	17
Lsp1109I	GCAGC	1 cut(s)	192
LweI	GCATC	2 cut(s)	394, 669
MaeI	CTAG	2 cut(s)	57, 86
MaeII	ACGT	2 cut(s)	495, 557
MaeIII	GTNAC	5 cut(s)	328, 539, 664, 704, 728
MalI	GATC	3 cut(s)	200, 536, 638
MbiI	CCGCTC	1 cut(s)	347
MboI	GATC	3 cut(s)	198, 534, 636
MboII	GAAGA	1 cut(s)	347
MluCI	AATT	3 cut(s)	185, 229, 269
MlyI	GAGTC	2 cut(s)	374, 457
MmeI	TCCRAC	2 cut(s)	387, 703
MnlI	CCTC	5 cut(s)	89, 163, 235, 646, 719
MroXI	GAANNNNTTC	1 cut(s)	29
MseI	TTAA	4 cut(s)	255, 285, 291, 551
MslI	CAYNNNNRTG	1 cut(s)	671
MspI	CCGG	4 cut(s)	191, 314, 408, 624
MspR9I	CCNGG	3 cut(s)	315, 460, 625
MvaI	CCWGG	1 cut(s)	460
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	75, 425
NciI	CCSGG	2 cut(s)	315, 625
NdeII	GATC	3 cut(s)	198, 534, 636
NlaIII	CATG	1 cut(s)	593
NmuCI	GTSAC	2 cut(s)	664, 728
OliI	CACNNNNGTG	1 cut(s)	671
PceI	AGGCCT	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 492
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	481
Pfl23II	CGTACG	1 cut(s)	63
PflMI	CCANNNNNTGG	1 cut(s)	449
PinAI	ACCGGT	1 cut(s)	190
PkrI	GCNGC	3 cut(s)	112, 182, 346
PleI	GAGTC	2 cut(s)	374, 457
PpsI	GAGTC	2 cut(s)	374, 457
Ppu21I	YACGTR	1 cut(s)	496
Psp6I	CCWGG	1 cut(s)	458
PspFI	CCCAGC	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	458
PspLI	CGTACG	1 cut(s)	63
PspPI	GGNCC	5 cut(s)	311, 335, 368, 456, 509
RsaI	GTAC	5 cut(s)	65, 98, 248, 322, 644
RsaNI	GTAC	5 cut(s)	64, 97, 247, 321, 643
RseI	CAYNNNNRTG	1 cut(s)	671
Rsr2I	CGGWCCG	1 cut(s)	311
RsrII	CGGWCCG	1 cut(s)	311
SaqAI	TTAA	4 cut(s)	255, 285, 291, 551
SatI	GCNGC	3 cut(s)	111, 181, 345
Sau3AI	GATC	3 cut(s)	198, 534, 636
Sau96I	GGNCC	5 cut(s)	311, 335, 368, 456, 509
SchI	GAGTC	2 cut(s)	374, 457
ScrFI	CCNGG	3 cut(s)	315, 460, 625
SetI	ASST	9 cut(s)	14, 62, 87, 138, 337, 498, 560, 730, 760
SfaNI	GCATC	2 cut(s)	394, 669
SfcI	CTRYAG	1 cut(s)	175
SinI	GGWCC	4 cut(s)	311, 335, 368, 509
SmiMI	CAYNNNNRTG	1 cut(s)	671
SmlI	CTYRAG	1 cut(s)	748
SmoI	CTYRAG	1 cut(s)	748
SnaBI	TACGTA	1 cut(s)	496
Sse9I	AATT	3 cut(s)	185, 229, 269
SseBI	AGGCCT	1 cut(s)	173
SsiI	CCGC	5 cut(s)	110, 207, 342, 345, 419
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	2 cut(s)	57, 86
StuI	AGGCCT	1 cut(s)	173
StyD4I	CCNGG	3 cut(s)	313, 458, 623
TaaI	ACNGT	7 cut(s)	20, 214, 368, 530, 545, 586, 650
TaiI	ACGT	2 cut(s)	498, 560
TaqI	TCGA	2 cut(s)	72, 81
TasI	AATT	3 cut(s)	185, 229, 269
TauI	GCSGC	2 cut(s)	113, 347
TfiI	GAWTC	1 cut(s)	481
Tru1I	TTAA	4 cut(s)	255, 285, 291, 551
Tru9I	TTAA	4 cut(s)	255, 285, 291, 551
TscAI	CASTG	3 cut(s)	435, 511, 655
TseFI	GTSAC	2 cut(s)	664, 728
TseI	GCWGC	1 cut(s)	180
Tsp45I	GTSAC	2 cut(s)	664, 728
TspDTI	ATGAA	2 cut(s)	22, 250
TspGWI	ACGGA	2 cut(s)	324, 501
TspRI	CASTG	3 cut(s)	435, 511, 655
Van91I	CCANNNNNTGG	1 cut(s)	449
VpaK11BI	GGWCC	4 cut(s)	311, 335, 368, 509
XagI	CCTNNNNNAGG	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	450
XmiI	GTMKAC	2 cut(s)	41, 498
XmnI	GAANNNNTTC	1 cut(s)	29
XspI	CTAG	2 cut(s)	57, 86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.