Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004690

Physical Location & Seq

Genomic Coordinates Reverse (-)

10767072 .. 10769303

Gene Structure 2232 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G19820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGTCTTCCACAAAACTCATTTCCATCACTTTCTTCTTATCTCTCCTCCTACGATTCTCCTCCGCCCAAACAGTCGTGAAAGCTACCTACTGGTTTGCGGAGAGTGAATCTCCGTTGGCCCAAATTGACTCATCTCTCTTCACTCACCTTTTTTGCGCTTTCGCCGATATCAACACTCTAACCTATCAAGTCATTGTCTCCTCCAGAAACAAACCCAAATTCTCAACATTTACACAAACCGTCCGACGGAGAAACCCTACCGTGAAAACCCTTTTGTCTATCGGCGGTGATTTCACATATAATTTCGCGTTTGCGTCTATGGCAAGTAACCCCACCTCTAGAAAACTGTTCATTAGTTCTTCTATTAAGCTCGCTAGATCGTGCGGATTCCACGGTCTCGATCTAAATTGGAAGTATCCGAGCATTACGACGGAGATGGACAATTTCGGGAAGCTACTTCGAGAATGGCGATTGGCGGTTGAAGCAGAGGCTAGAAGCAGCGGTAAACCGCGTTTGCTTTTGACGGCTGCGGTATTCTACTCCTACAGTTATTATTCGGTCTTACACCCAGTTAATGCCGTTGCCGATAGCTTAGATTGGGTTAATCTTGTTGCCTACGATTTTTATGAATCGGGTTCGTCTAGAGTAACTTGCTCACCAGCTCCTCTCTACGATCCTATAACCACAGGTCCAAGCGGCGACGCCGGAGTGAGAGCGTGGACTCAAGCTGGACTTCCGGCGAAGAAAGCAGTCTTGGGATTTCCATTATACGGCTACGCATGGTGTCTCACAGACGCCAAGAATCATAACTACTACGCGAATAGCAGCGGACCGGCGATATCACCAGACGGTTCTATCGGATACGATCAGATAAGAAGGTTCATAGTGGATAACAAAGCAACGATGGTTTATAATTCGAATTTGGTTCAGAATTACTGTTATGCCAAGAAGACTTGGATTGGTTACGATGATAATCAAAGTATTGTTATGAAAGTGAAATACGCTAAGCAAAGAGGTCTACTTGGTTATTTCTCGTGGCACATTGGAGCTGACGATAATTCTCGTCTATCTCGTGCAGCGTCACAGGCATGGGATGCTAAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0006950 GO:0006970 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0008843 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0016787 GO:0016798 GO:0017144 GO:0030312 GO:0033993 GO:0035885 GO:0042221 GO:0042737 GO:0043170 GO:0044237 GO:0044248 GO:0044464 GO:0046348 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0097367 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

368

Amino Acids

41.11

Weight (kDa)

9.4

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	24 - 351	6.7e-70	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19720 AT4G19740 AT4G19750 AT4G19760 AT4G19770 AT4G19800 AT4G19810 AT4G19810 AT4G19820
fragaria_vesca	FvH4_1g01321 FvH4_1g01362 FvH4_1g01382
malus_domestica	MD02G1011100.v1.1 MD15G1156100.v1.1
prunus_persica	Prupe.4G180800_v2.0.a1 Prupe.7G258500_v2.0.a1 Prupe.7G259000_v2.0.a1
pyrus_communis	pycom02g01000
rosa_chinensis	RchiOBHm_Chr2g0086161
rosa_laevigata	RLG00000027969 RLG00000033389
rosa_multiflora	Rmu_co8454935.1_g000002 Rmu_sc0004510.1_g000010 Rmu_sc0004948.1_g000003 Rmu_sc0004948.1_g000021
rosa_roxburghii	Rroxscaffold_152G00434840
rosa_rugosa	Rorug01G0466300
rosa_samantha	Rh2AG016100 Rh2CG017000 Rh2DG018100
rosa_wichuraiana	Rw2G001390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	912
AccI	GTMKAC	1 cut(s)	1018
AccII	CGCG	3 cut(s)	308, 511, 818
AclWI	GGATC	1 cut(s)	668
AcsI	RAATTY	2 cut(s)	218, 919
AcyI	GRCGYC	2 cut(s)	702, 795
AfiI	CCNNNNNNNGG	2 cut(s)	246, 770
AgsI	TTSAA	1 cut(s)	482
AjuI	GAANNNNNNNTTGG	2 cut(s)	737, 769
AluBI	AGCT	7 cut(s)	83, 370, 454, 591, 662, 728, 1049
AluI	AGCT	7 cut(s)	83, 370, 454, 591, 662, 728, 1049
Alw26I	GTCTC	3 cut(s)	202, 401, 791
AlwI	GGATC	1 cut(s)	668
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	4 cut(s)	498, 527, 825, 1076
ApoI	RAATTY	2 cut(s)	218, 919
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	3 cut(s)	118, 689, 830
AsuHPI	GGTGA	4 cut(s)	137, 299, 648, 834
AsuII	TTCGAA	1 cut(s)	917
AvaII	GGWCC	2 cut(s)	689, 830
BauI	CACGAG	2 cut(s)	1033, 1071
BbsI	GAAGAC	1 cut(s)	956
BbvI	GCAGC	4 cut(s)	510, 514, 837, 1088
BccI	CCATC	3 cut(s)	32, 430, 898
BceAI	ACGGC	3 cut(s)	540, 563, 787
BciVI	GTATCC	2 cut(s)	426, 854
BcoDI	GTCTC	3 cut(s)	202, 401, 791
BfaI	CTAG	4 cut(s)	339, 375, 492, 642
BfmI	CTRYAG	1 cut(s)	544
BfuI	GTATCC	2 cut(s)	426, 854
BisI	GCNGC	5 cut(s)	499, 528, 697, 826, 1077
BlpI	GCTNAGC	1 cut(s)	1005
BlsI	GCNGC	5 cut(s)	500, 529, 698, 827, 1078
Bme18I	GGWCC	2 cut(s)	689, 830
BmgT120I	GGNCC	3 cut(s)	118, 689, 830
BmrI	ACTGGG	1 cut(s)	563
BmsI	GCATC	1 cut(s)	1084
BmuI	ACTGGG	1 cut(s)	563
BpiI	GAAGAC	1 cut(s)	956
BplI	GAGNNNNNCTC	2 cut(s)	94, 126
BpmI	CTGGAG	1 cut(s)	187
Bpu1102I	GCTNAGC	1 cut(s)	1005
Bpu14I	TTCGAA	1 cut(s)	917
BpuEI	CTTGAG	1 cut(s)	708
BsaBI	GATNNNNATC	1 cut(s)	972
BsaHI	GRCGYC	2 cut(s)	702, 795
BsaI	GGTCTC	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 770
Bse118I	RCCGGY	1 cut(s)	832
Bse1I	ACTGG	2 cut(s)	95, 569
Bse8I	GATNNNNATC	1 cut(s)	972
BseDI	CCNNGG	1 cut(s)	391
BseGI	GGATG	1 cut(s)	1099
BseJI	GATNNNNATC	1 cut(s)	972
BseLI	CCNNNNNNNGG	2 cut(s)	246, 770
BseNI	ACTGG	2 cut(s)	95, 569
BseRI	GAGGAG	4 cut(s)	35, 49, 190, 654
BseXI	GCAGC	4 cut(s)	510, 514, 837, 1088
BsgI	GTGCAG	1 cut(s)	1095
Bsh1236I	CGCG	3 cut(s)	308, 511, 818
BshFI	GGCC	1 cut(s)	119
BsiSI	CCGG	3 cut(s)	705, 737, 833
BslI	CCNNNNNNNGG	2 cut(s)	246, 770
BsmAI	GTCTC	3 cut(s)	202, 401, 791
BsnI	GGCC	1 cut(s)	119
Bso31I	GGTCTC	1 cut(s)	401
Bsp119I	TTCGAA	1 cut(s)	917
Bsp143I	GATC	4 cut(s)	377, 400, 673, 865
Bsp1720I	GCTNAGC	1 cut(s)	1005
BspANI	GGCC	1 cut(s)	119
BspFNI	CGCG	3 cut(s)	308, 511, 818
BspPI	GGATC	1 cut(s)	668
BspT104I	TTCGAA	1 cut(s)	917
BspTNI	GGTCTC	1 cut(s)	401
BsrFI	RCCGGY	1 cut(s)	832
BsrI	ACTGG	2 cut(s)	95, 569
BssAI	RCCGGY	1 cut(s)	832
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	4 cut(s)	377, 400, 673, 865
BssNI	GRCGYC	2 cut(s)	702, 795
BssSI	CACGAG	2 cut(s)	1033, 1071
Bst2BI	CACGAG	2 cut(s)	1033, 1071
Bst4CI	ACNGT	8 cut(s)	73, 241, 262, 348, 395, 548, 851, 938
Bst6I	CTCTTC	1 cut(s)	143
BstACI	GRCGYC	2 cut(s)	702, 795
BstAPI	GCANNNNNTGC	1 cut(s)	1094
BstBI	TTCGAA	1 cut(s)	917
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	3 cut(s)	592, 1005, 1098
BstDSI	CCRYGG	1 cut(s)	391
BstF5I	GGATG	1 cut(s)	1099
BstFNI	CGCG	3 cut(s)	308, 511, 818
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	4 cut(s)	380, 403, 676, 868
BstMAI	GTCTC	3 cut(s)	202, 401, 791
BstMBI	GATC	4 cut(s)	377, 400, 673, 865
BstMWI	GCNNNNNNNGC	5 cut(s)	320, 482, 746, 1085, 1094
BstSFI	CTRYAG	1 cut(s)	544
BstUI	CGCG	3 cut(s)	308, 511, 818
BstV1I	GCAGC	4 cut(s)	510, 514, 837, 1088
BstV2I	GAAGAC	1 cut(s)	956
BsuI	GTATCC	2 cut(s)	426, 854
BsuRI	GGCC	1 cut(s)	119
BtgI	CCRYGG	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	1099
Cac8I	GCNNGC	1 cut(s)	372
CfoI	GCGC	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	832
Cfr13I	GGNCC	3 cut(s)	118, 689, 830
CpoI	CGGWCCG	1 cut(s)	830
CseI	GACGC	4 cut(s)	303, 710, 803, 1068
CspI	CGGWCCG	1 cut(s)	830
CviAII	CATG	2 cut(s)	780, 1089
DdeI	CTNAG	3 cut(s)	592, 1005, 1098
DpnI	GATC	4 cut(s)	379, 402, 675, 867
DpnII	GATC	4 cut(s)	377, 400, 673, 865
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
EciI	GGCGGA	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	401
Eco32I	GATATC	2 cut(s)	169, 840
Eco47I	GGWCC	2 cut(s)	689, 830
EcoRV	GATATC	2 cut(s)	169, 840
FaeI	CATG	2 cut(s)	783, 1092
FalI	AAGNNNNNCTT	2 cut(s)	717, 749
FatI	CATG	2 cut(s)	779, 1088
FblI	GTMKAC	1 cut(s)	1018
Fnu4HI	GCNGC	5 cut(s)	499, 528, 697, 826, 1077
Fsp4HI	GCNGC	5 cut(s)	499, 528, 697, 826, 1077
FspBI	CTAG	4 cut(s)	339, 375, 492, 642
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	5 cut(s)	499, 528, 697, 826, 1077
GsuI	CTGGAG	1 cut(s)	187
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	3 cut(s)	705, 737, 833
HgaI	GACGC	4 cut(s)	303, 710, 803, 1068
HhaI	GCGC	1 cut(s)	158
Hin1I	GRCGYC	2 cut(s)	702, 795
Hin1II	CATG	2 cut(s)	783, 1092
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HinfI	GANTC	7 cut(s)	54, 107, 128, 387, 629, 721, 802
HpaII	CCGG	3 cut(s)	705, 737, 833
HphI	GGTGA	4 cut(s)	137, 299, 648, 834
Hpy166II	GTNNAC	3 cut(s)	506, 720, 1019
Hpy188I	TCNGA	5 cut(s)	245, 420, 860, 870, 930
Hpy188III	TCNNGA	7 cut(s)	76, 204, 339, 398, 448, 461, 642
Hpy8I	GTNNAC	3 cut(s)	506, 720, 1019
Hpy99I	CGWCG	3 cut(s)	249, 433, 704
HpyAV	CCTTC	1 cut(s)	870
HpyCH4III	ACNGT	8 cut(s)	73, 241, 262, 348, 395, 548, 851, 938
HpyCH4V	TGCA	1 cut(s)	1076
HpyF10VI	GCNNNNNNNGC	5 cut(s)	320, 482, 746, 1085, 1094
HpyF3I	CTNAG	3 cut(s)	592, 1005, 1098
Hsp92I	GRCGYC	2 cut(s)	702, 795
Hsp92II	CATG	2 cut(s)	783, 1092
HspAI	GCGC	1 cut(s)	156
Kzo9I	GATC	4 cut(s)	377, 400, 673, 865
LmnI	GCTCC	2 cut(s)	667, 1046
Lsp1109I	GCAGC	4 cut(s)	510, 514, 837, 1088
LweI	GCATC	1 cut(s)	1084
MaeI	CTAG	4 cut(s)	339, 375, 492, 642
MaeIII	GTNAC	4 cut(s)	326, 646, 962, 1080
MalI	GATC	4 cut(s)	379, 402, 675, 867
MboI	GATC	4 cut(s)	377, 400, 673, 865
MboII	GAAGA	5 cut(s)	25, 130, 351, 754, 961
MluCI	AATT	9 cut(s)	123, 218, 301, 406, 442, 913, 919, 931, 1057
MlyI	GAGTC	2 cut(s)	122, 715
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	8 cut(s)	56, 70, 211, 346, 481, 675, 1007, 1095
MseI	TTAA	3 cut(s)	366, 573, 603
MslI	CAYNNNNRTG	1 cut(s)	1087
MspA1I	CMGCKG	2 cut(s)	501, 828
MspI	CCGG	3 cut(s)	705, 737, 833
MvnI	CGCG	3 cut(s)	308, 511, 818
MwoI	GCNNNNNNNGC	5 cut(s)	320, 482, 746, 1085, 1094
NdeII	GATC	4 cut(s)	377, 400, 673, 865
NlaIII	CATG	2 cut(s)	783, 1092
NmuCI	GTSAC	1 cut(s)	1080
NspV	TTCGAA	1 cut(s)	917
PcsI	WCGNNNNNNNCGW	2 cut(s)	466, 1069
PfeI	GAWTC	5 cut(s)	54, 107, 387, 629, 802
PkrI	GCNGC	5 cut(s)	500, 529, 698, 827, 1078
PleI	GAGTC	2 cut(s)	122, 715
PpsI	GAGTC	2 cut(s)	122, 715
PsiI	TTATAA	1 cut(s)	912
PspPI	GGNCC	3 cut(s)	118, 689, 830
RseI	CAYNNNNRTG	1 cut(s)	1087
Rsr2I	CGGWCCG	1 cut(s)	830
RsrII	CGGWCCG	1 cut(s)	830
SaqAI	TTAA	3 cut(s)	366, 573, 603
SatI	GCNGC	5 cut(s)	499, 528, 697, 826, 1077
Sau3AI	GATC	4 cut(s)	377, 400, 673, 865
Sau96I	GGNCC	3 cut(s)	118, 689, 830
SchI	GAGTC	2 cut(s)	122, 715
SfaNI	GCATC	1 cut(s)	1084
SfcI	CTRYAG	1 cut(s)	544
SfuI	TTCGAA	1 cut(s)	917
SinI	GGWCC	2 cut(s)	689, 830
SmiMI	CAYNNNNRTG	1 cut(s)	1087
SmlI	CTYRAG	1 cut(s)	723
SmoI	CTYRAG	1 cut(s)	723
Sse9I	AATT	9 cut(s)	123, 218, 301, 406, 442, 913, 919, 931, 1057
SspMI	CTAG	4 cut(s)	339, 375, 492, 642
TaaI	ACNGT	8 cut(s)	73, 241, 262, 348, 395, 548, 851, 938
TaqI	TCGA	3 cut(s)	399, 460, 917
TaqII	GACCGA	1 cut(s)	547
TasI	AATT	9 cut(s)	123, 218, 301, 406, 442, 913, 919, 931, 1057
TauI	GCSGC	1 cut(s)	699
TfiI	GAWTC	5 cut(s)	54, 107, 387, 629, 802
Tru1I	TTAA	3 cut(s)	366, 573, 603
Tru9I	TTAA	3 cut(s)	366, 573, 603
TseFI	GTSAC	1 cut(s)	1080
TseI	GCWGC	4 cut(s)	498, 527, 825, 1076
Tsp45I	GTSAC	1 cut(s)	1080
TspDTI	ATGAA	4 cut(s)	340, 642, 871, 1004
TspGWI	ACGGA	3 cut(s)	102, 262, 446
VpaK11BI	GGWCC	2 cut(s)	689, 830
XapI	RAATTY	2 cut(s)	218, 919
XbaI	TCTAGA	2 cut(s)	338, 641
XmiI	GTMKAC	1 cut(s)	1018
XspI	CTAG	4 cut(s)	339, 375, 492, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.