AT4G19800

Contains the following InterPro domains Glycoside hydrolase, family 18, catalytic domain (InterPro IPR001223), Chitinase II (InterPro IPR011583), Glycoside hydrolase, catalytic core (InterPro IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro IPR013781)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004690
Physical Location & Seq
Reverse (-)
10760830 .. 10762104
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19800.1

Sequence Viewer

Length: 1197 bp
ATGTCTGAGTCCGACGTCGTCAAAGCTTCATACTGGTTCCCGGCTACTGACTTTCCGGCCACGGACATCGACTCATCCCTTTTCACTCACCTCTTCTGTACATTTGCCGATCTCGAAGCTGAGTCATACGAAATCACTATCGCCACATGGAACCAAGCACCATTCCACGCTTTTACAGAGACTGTCCAACAGAGAAATCCTCACGTTAAAACACTCTTGTCAATAGGTGGCGGTAATGCTGACAAAGACGCGTTCGCATCCATGGCAAGTAACCCCGACTCCAGGGCATCGTTCATTCAATCGACAATCACCGTTGCTAGGTCGTACGGCTTCCATGGCCTCGACCTAGACTGGGAGTACCCGAGAAACGAGGAAGAGATGTACGATTTCGGGAAGCTACTGGAAGAATGGCGATCGGCCGTTGAGGCCGAGTCCAATAGCAGCGGTACAACGGCTTTGATCTTGACAGCTGCGGTTTACTACTCCTCGAATTACCAAGGGGTACCGTACCCTGTTCTGGCCATTTCCAACAGCTTGGATTGGATTAATCTTATGGCCTATGATTTTTACGGACCGGGTTGGTCTACAGTGACTGGTCCACCCGCCTCTCTGTATCTTCCAACCGACGGTCGAAGTGGAGACTCAGGTGTGAGGGACTGGACTGAAGCCGGACTTCCTGCGAAAAAAGCCGTGTTAGGATTCCCATACTATGGCTGGGCCTGGACTCTGGCAGACCCCGACGTTAACGGCTATGACGCAAACACCACTGGACCAGCAATATCAGATGACGGTGAGATCAGTTACCGTCAGTTACAGACGTGGATAGTAGATAATGGAGCGACGAAGGTGCATGATGACATGATGGTCGGAGACTATTGCTACGCCGGGACAACTTGGATCGGGTACGACAGTGAGAAGAGCATCGTCACCAAAGTGATATACGCTAAGCAGAAGGGTCTGCTTGGTTACTTCTCGTGGCACGTTGGAGGTGACGACAACTCGGAACTCTCTAGTGCAGGTTCGACTCCTTACCATATACTTATTTTATGTATGAGTTGGAAATATAGTAAGATTTATCATCCGATCCATGTAATAAATAGCACGAATTGGACGATAATTTATAACAGTAGGAAATTTGATATATTGAATTTTGTTTTTATAGCGTCACAAGCATGGGATATTACAGAGATGGAATGA

Protein Analysis

398

Amino Acids

44.36

Weight (kDa)

4.51

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 18 - 331 7e-74 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1122
AasI GACNNNNNNGTC 1 cut(s) 863
AatII GACGTC 1 cut(s) 18
Acc36I ACCTGC 1 cut(s) 1007
Acc65I GGTACC 1 cut(s) 502
AccB1I GGYRCC 1 cut(s) 502
AccB7I CCANNNNNTGG 1 cut(s) 710
AccI GTMKAC 1 cut(s) 584
AccII CGCG 1 cut(s) 251
AciI CCGC 4 cut(s) 231, 444, 473, 603
AclWI GGATC 2 cut(s) 905, 1078
AcoI YGGCCR 3 cut(s) 57, 417, 519
AcsI RAATTY 2 cut(s) 1133, 1147
AcuI CTGAAG 1 cut(s) 684
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 8 cut(s) 100, 326, 359, 383, 448, 504, 509, 905
AfiI CCNNNNNNNGG 6 cut(s) 282, 318, 352, 517, 626, 710
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 2 cut(s) 299, 1147
AjiI CACGTC 1 cut(s) 819
AjnI CCWGG 2 cut(s) 281, 719
AleI CACNNNNGTG 1 cut(s) 932
AluBI AGCT 5 cut(s) 26, 119, 397, 470, 534
AluI AGCT 5 cut(s) 26, 119, 397, 470, 534
Alw26I GTCTC 3 cut(s) 173, 633, 864
AlwI GGATC 2 cut(s) 905, 1078
AlwNI CAGNNNCTG 2 cut(s) 182, 593
Ama87I CYCGRG 1 cut(s) 361
AoxI GGCC 7 cut(s) 57, 337, 417, 426, 519, 555, 717
ApeKI GCWGC 2 cut(s) 441, 470
ApoI RAATTY 2 cut(s) 1133, 1147
AseI ATTAAT 1 cut(s) 546
Asp718I GGTACC 1 cut(s) 502
AspS9I GGNCC 4 cut(s) 572, 596, 717, 770
AsuC2I CCSGG 3 cut(s) 41, 576, 886
AsuHPI GGTGA 5 cut(s) 80, 301, 803, 919, 1001
AvaI CYCGRG 1 cut(s) 361
AvaII GGWCC 3 cut(s) 572, 596, 770
BaeI ACNNNNGTAYC 2 cut(s) 895, 928
BalI TGGCCA 1 cut(s) 521
BanI GGYRCC 1 cut(s) 502
BauI CACGAG 1 cut(s) 973
BbvI GCAGC 2 cut(s) 453, 457
BccI CCATC 2 cut(s) 856, 1183
BceAI ACGGC 5 cut(s) 343, 404, 468, 674, 763
BcgI CGANNNNNNTGC 2 cut(s) 829, 863
BciT130I CCWGG 2 cut(s) 283, 721
BcnI CCSGG 3 cut(s) 41, 576, 886
BcoDI GTCTC 3 cut(s) 173, 633, 864
BfaI CTAG 3 cut(s) 318, 347, 1011
BfmI CTRYAG 1 cut(s) 585
BfuAI ACCTGC 1 cut(s) 1007
BglI GCCNNNNNGGC 1 cut(s) 425
BisI GCNGC 2 cut(s) 442, 471
BlpI GCTNAGC 1 cut(s) 945
BlsI GCNGC 2 cut(s) 443, 472
Bme1390I CCNGG 5 cut(s) 41, 283, 576, 721, 886
Bme18I GGWCC 3 cut(s) 572, 596, 770
BmeT110I CYCGRG 1 cut(s) 361
BmgBI CACGTC 1 cut(s) 819
BmgT120I GGNCC 4 cut(s) 572, 596, 717, 770
BmiI GGNNCC 3 cut(s) 38, 152, 504
BmrFI CCNGG 5 cut(s) 41, 283, 576, 721, 886
BmrI ACTGGG 1 cut(s) 361
BmsI GCATC 3 cut(s) 266, 296, 930
BmuI ACTGGG 1 cut(s) 361
BplI GAGNNNNNCTC 2 cut(s) 184, 216
BpmI CTGGAG 1 cut(s) 265
Bpu1102I GCTNAGC 1 cut(s) 945
BpuMI CCSGG 3 cut(s) 41, 576, 886
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 5 cut(s) 60, 261, 282, 334, 496
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 6 cut(s) 282, 318, 352, 517, 626, 710
Bse1I ACTGG 6 cut(s) 38, 356, 405, 598, 662, 772
BseBI CCWGG 2 cut(s) 283, 721
BseDI CCNNGG 5 cut(s) 60, 261, 282, 334, 496
BseGI GGATG 3 cut(s) 74, 257, 1078
BseLI CCNNNNNNNGG 6 cut(s) 282, 318, 352, 517, 626, 710
BseMII CTCAG 2 cut(s) 111, 657
BseNI ACTGG 6 cut(s) 38, 356, 405, 598, 662, 772
BseRI GAGGAG 1 cut(s) 475
BseX3I CGGCCG 1 cut(s) 417
BseXI GCAGC 2 cut(s) 453, 457
BseYI CCCAGC 1 cut(s) 714
BsgI GTGCAG 1 cut(s) 1035
Bsh1236I CGCG 1 cut(s) 251
Bsh1285I CGRYCG 3 cut(s) 416, 420, 631
BshFI GGCC 7 cut(s) 59, 339, 419, 428, 521, 557, 719
BshNI GGYRCC 1 cut(s) 502
BsiEI CGRYCG 3 cut(s) 416, 420, 631
BsiHKCI CYCGRG 1 cut(s) 361
BsiSI CCGG 5 cut(s) 41, 56, 575, 669, 885
BsiWI CGTACG 1 cut(s) 324
BslFI GGGAC 2 cut(s) 668, 901
BslI CCNNNNNNNGG 6 cut(s) 282, 318, 352, 517, 626, 710
BsmAI GTCTC 3 cut(s) 173, 633, 864
BsmFI GGGAC 2 cut(s) 668, 901
BsnI GGCC 7 cut(s) 59, 339, 419, 428, 521, 557, 719
BsoBI CYCGRG 1 cut(s) 361
Bsp1407I TGTACA 1 cut(s) 98
Bsp143I GATC 6 cut(s) 109, 413, 459, 795, 897, 1083
Bsp1720I GCTNAGC 1 cut(s) 945
Bsp19I CCATGG 2 cut(s) 261, 334
BspACI CCGC 4 cut(s) 231, 444, 473, 603
BspANI GGCC 7 cut(s) 59, 339, 419, 428, 521, 557, 719
BspCNI CTCAG 2 cut(s) 112, 656
BspFNI CGCG 1 cut(s) 251
BspLI GGNNCC 3 cut(s) 38, 152, 504
BspMI ACCTGC 1 cut(s) 1007
BspPI GGATC 2 cut(s) 905, 1078
BspQI GCTCTTC 1 cut(s) 911
BspT107I GGYRCC 1 cut(s) 502
BsrGI TGTACA 1 cut(s) 98
BsrI ACTGG 6 cut(s) 38, 356, 405, 598, 662, 772
BssECI CCNNGG 5 cut(s) 60, 261, 282, 334, 496
BssMI GATC 6 cut(s) 109, 413, 459, 795, 897, 1083
BssNI GRCGYC 1 cut(s) 15
BssSI CACGAG 1 cut(s) 973
BssT1I CCWWGG 3 cut(s) 261, 334, 496
Bst2BI CACGAG 1 cut(s) 973
Bst2UI CCWGG 2 cut(s) 283, 721
Bst4CI ACNGT 9 cut(s) 184, 313, 507, 589, 629, 791, 806, 911, 1127
Bst6I CTCTTC 3 cut(s) 98, 369, 911
BstACI GRCGYC 1 cut(s) 15
BstAUI TGTACA 1 cut(s) 98
BstDEI CTNAG 4 cut(s) 6, 120, 643, 945
BstDSI CCRYGG 3 cut(s) 60, 261, 334
BstF5I GGATG 3 cut(s) 74, 257, 1078
BstFNI CGCG 1 cut(s) 251
BstKTI GATC 6 cut(s) 112, 416, 462, 798, 900, 1086
BstMAI GTCTC 3 cut(s) 173, 633, 864
BstMBI GATC 6 cut(s) 109, 413, 459, 795, 897, 1083
BstMCI CGRYCG 3 cut(s) 416, 420, 631
BstMWI GCNNNNNNNGC 5 cut(s) 263, 336, 425, 686, 1169
BstNI CCWGG 2 cut(s) 283, 721
BstSCI CCNGG 5 cut(s) 39, 281, 574, 719, 884
BstSFI CTRYAG 1 cut(s) 585
BstUI CGCG 1 cut(s) 251
BstV1I GCAGC 2 cut(s) 453, 457
BstXI CCANNNNNNTGG 1 cut(s) 535
BstZI CGGCCG 1 cut(s) 417
BsuRI GGCC 7 cut(s) 59, 339, 419, 428, 521, 557, 719
BtgI CCRYGG 3 cut(s) 60, 261, 334
BtrI CACGTC 1 cut(s) 819
BtsCI GGATG 3 cut(s) 74, 257, 1078
BtsIMutI CAGTG 3 cut(s) 594, 765, 916
BveI ACCTGC 1 cut(s) 1007
CaiI CAGNNNCTG 2 cut(s) 182, 593
Cfr13I GGNCC 4 cut(s) 572, 596, 717, 770
CpoI CGGWCCG 1 cut(s) 572
CseI GACGC 3 cut(s) 257, 764, 1152
Csp6I GTAC 8 cut(s) 99, 325, 358, 382, 447, 503, 508, 904
CspI CGGWCCG 1 cut(s) 572
CviAII CATG 7 cut(s) 147, 262, 335, 851, 859, 1088, 1173
CviQI GTAC 8 cut(s) 99, 325, 358, 382, 447, 503, 508, 904
DdeI CTNAG 4 cut(s) 6, 120, 643, 945
DpnI GATC 6 cut(s) 111, 415, 461, 797, 899, 1085
DpnII GATC 6 cut(s) 109, 413, 459, 795, 897, 1083
DrdI GACNNNNNNGTC 1 cut(s) 863
DseDI GACNNNNNNGTC 1 cut(s) 863
EaeI YGGCCR 3 cut(s) 57, 417, 519
EagI CGGCCG 1 cut(s) 417
Eam1104I CTCTTC 3 cut(s) 98, 369, 911
EarI CTCTTC 3 cut(s) 98, 369, 911
EclXI CGGCCG 1 cut(s) 417
Eco130I CCWWGG 3 cut(s) 261, 334, 496
Eco47I GGWCC 3 cut(s) 572, 596, 770
Eco52I CGGCCG 1 cut(s) 417
Eco57I CTGAAG 1 cut(s) 684
Eco88I CYCGRG 1 cut(s) 361
EcoRII CCWGG 2 cut(s) 281, 719
EcoT14I CCWWGG 3 cut(s) 261, 334, 496
ErhI CCWWGG 3 cut(s) 261, 334, 496
FaeI CATG 7 cut(s) 150, 265, 338, 854, 862, 1091, 1176
FalI AAGNNNNNCTT 2 cut(s) 657, 689
FaqI GGGAC 2 cut(s) 668, 901
FatI CATG 7 cut(s) 146, 261, 334, 850, 858, 1087, 1172
FauI CCCGC 1 cut(s) 610
FblI GTMKAC 1 cut(s) 584
Fnu4HI GCNGC 2 cut(s) 442, 471
FokI GGATG 3 cut(s) 61, 244, 1065
Fsp4HI GCNGC 2 cut(s) 442, 471
FspBI CTAG 3 cut(s) 318, 347, 1011
GluI GCNGC 2 cut(s) 442, 471
GsaI CCCAGC 1 cut(s) 718
GsuI CTGGAG 1 cut(s) 265
HaeIII GGCC 7 cut(s) 59, 339, 419, 428, 521, 557, 719
HapII CCGG 5 cut(s) 41, 56, 575, 669, 885
HgaI GACGC 3 cut(s) 257, 764, 1152
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 7 cut(s) 150, 265, 338, 854, 862, 1091, 1176
HincII GTYRAC 1 cut(s) 745
HindII GTYRAC 1 cut(s) 745
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 9 cut(s) 8, 71, 122, 278, 431, 641, 699, 724, 1024
HpaI GTTAAC 1 cut(s) 745
HpaII CCGG 5 cut(s) 41, 56, 575, 669, 885
HphI GGTGA 5 cut(s) 80, 301, 803, 919, 1001
Hpy166II GTNNAC 4 cut(s) 478, 585, 599, 745
Hpy188I TCNGA 6 cut(s) 7, 13, 784, 869, 1003, 1083
Hpy188III TCNNGA 3 cut(s) 113, 391, 463
Hpy8I GTNNAC 4 cut(s) 478, 585, 599, 745
Hpy99I CGWCG 5 cut(s) 17, 20, 629, 743, 844
HpyAV CCTTC 2 cut(s) 838, 946
HpyCH4III ACNGT 9 cut(s) 184, 313, 507, 589, 629, 791, 806, 911, 1127
HpyCH4IV ACGT 5 cut(s) 15, 204, 741, 818, 981
HpyCH4V TGCA 2 cut(s) 850, 1016
HpyF10VI GCNNNNNNNGC 5 cut(s) 263, 336, 425, 686, 1169
HpyF3I CTNAG 4 cut(s) 6, 120, 643, 945
HpySE526I ACGT 5 cut(s) 15, 204, 741, 818, 981
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 7 cut(s) 150, 265, 338, 854, 862, 1091, 1176
KpnI GGTACC 1 cut(s) 506
KspAI GTTAAC 1 cut(s) 745
Kzo9I GATC 6 cut(s) 109, 413, 459, 795, 897, 1083
LguI GCTCTTC 1 cut(s) 911
LmnI GCTCC 1 cut(s) 836
Lsp1109I GCAGC 2 cut(s) 453, 457
LweI GCATC 3 cut(s) 266, 296, 930
MaeI CTAG 3 cut(s) 318, 347, 1011
MaeII ACGT 5 cut(s) 15, 204, 741, 818, 981
MaeIII GTNAC 8 cut(s) 269, 589, 800, 810, 925, 965, 989, 1164
MalI GATC 6 cut(s) 111, 415, 461, 797, 899, 1085
MboI GATC 6 cut(s) 109, 413, 459, 795, 897, 1083
MboII GAAGA 5 cut(s) 85, 386, 416, 608, 928
MlsI TGGCCA 1 cut(s) 521
MluCI AATT 5 cut(s) 490, 1105, 1116, 1133, 1147
MluI ACGCGT 1 cut(s) 249
MluNI TGGCCA 1 cut(s) 521
MlyI GAGTC 8 cut(s) 17, 65, 131, 272, 440, 635, 718, 1018
MmeI TCCRAC 7 cut(s) 36, 211, 552, 644, 847, 964, 1037
MnlI CCTC 9 cut(s) 101, 210, 350, 364, 418, 496, 616, 645, 980
Mox20I TGGCCA 1 cut(s) 521
MscI TGGCCA 1 cut(s) 521
MseI TTAA 3 cut(s) 207, 546, 744
MslI CAYNNNNRTG 2 cut(s) 932, 1171
Msp20I TGGCCA 1 cut(s) 521
MspA1I CMGCKG 2 cut(s) 444, 470
MspI CCGG 5 cut(s) 41, 56, 575, 669, 885
MspR9I CCNGG 5 cut(s) 41, 283, 576, 721, 886
MvaI CCWGG 2 cut(s) 283, 721
MvnI CGCG 1 cut(s) 251
MwoI GCNNNNNNNGC 5 cut(s) 263, 336, 425, 686, 1169
NciI CCSGG 3 cut(s) 41, 576, 886
NcoI CCATGG 2 cut(s) 261, 334
NdeII GATC 6 cut(s) 109, 413, 459, 795, 897, 1083
NlaIII CATG 7 cut(s) 150, 265, 338, 854, 862, 1091, 1176
NlaIV GGNNCC 3 cut(s) 38, 152, 504
NmeAIII GCCGAG 1 cut(s) 454
NmuCI GTSAC 4 cut(s) 589, 925, 989, 1164
OliI CACNNNNGTG 1 cut(s) 932
PciSI GCTCTTC 1 cut(s) 911
PcsI WCGNNNNNNNCGW 1 cut(s) 1109
PfeI GAWTC 1 cut(s) 699
Pfl23II CGTACG 1 cut(s) 324
PflFI GACNNNGTC 1 cut(s) 17
PflMI CCANNNNNTGG 1 cut(s) 710
PkrI GCNGC 2 cut(s) 443, 472
Ple19I CGATCG 1 cut(s) 416
PleI GAGTC 8 cut(s) 16, 65, 130, 272, 439, 635, 718, 1018
PpsI GAGTC 8 cut(s) 16, 65, 130, 272, 439, 635, 718, 1018
PshBI ATTAAT 1 cut(s) 546
PsiI TTATAA 1 cut(s) 1122
Psp6I CCWGG 2 cut(s) 281, 719
PspFI CCCAGC 1 cut(s) 714
PspGI CCWGG 2 cut(s) 281, 719
PspLI CGTACG 1 cut(s) 324
PspN4I GGNNCC 3 cut(s) 38, 152, 504
PspPI GGNCC 4 cut(s) 572, 596, 717, 770
PstNI CAGNNNCTG 2 cut(s) 182, 593
PsyI GACNNNGTC 1 cut(s) 17
PvuI CGATCG 1 cut(s) 416
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 8 cut(s) 100, 326, 359, 383, 448, 504, 509, 905
RsaNI GTAC 8 cut(s) 99, 325, 358, 382, 447, 503, 508, 904
RseI CAYNNNNRTG 2 cut(s) 932, 1171
Rsr2I CGGWCCG 1 cut(s) 572
RsrII CGGWCCG 1 cut(s) 572
SapI GCTCTTC 1 cut(s) 911
SaqAI TTAA 3 cut(s) 207, 546, 744
SatI GCNGC 2 cut(s) 442, 471
Sau3AI GATC 6 cut(s) 109, 413, 459, 795, 897, 1083
Sau96I GGNCC 4 cut(s) 572, 596, 717, 770
SchI GAGTC 8 cut(s) 17, 65, 131, 272, 440, 635, 718, 1018
ScrFI CCNGG 5 cut(s) 41, 283, 576, 721, 886
SfaNI GCATC 3 cut(s) 266, 296, 930
SfcI CTRYAG 1 cut(s) 585
SfiI GGCCNNNNNGGCC 1 cut(s) 425
SinI GGWCC 3 cut(s) 572, 596, 770
SmiMI CAYNNNNRTG 2 cut(s) 932, 1171
Sse9I AATT 5 cut(s) 490, 1105, 1116, 1133, 1147
SsiI CCGC 4 cut(s) 231, 444, 473, 603
SspMI CTAG 3 cut(s) 318, 347, 1011
StyD4I CCNGG 5 cut(s) 39, 281, 574, 719, 884
StyI CCWWGG 3 cut(s) 261, 334, 496
TaaI ACNGT 9 cut(s) 184, 313, 507, 589, 629, 791, 806, 911, 1127
TaiI ACGT 5 cut(s) 18, 207, 744, 821, 984
TaqI TCGA 7 cut(s) 69, 114, 302, 342, 488, 631, 1022
TasI AATT 5 cut(s) 490, 1105, 1116, 1133, 1147
TatI WGTACW 1 cut(s) 98
TfiI GAWTC 1 cut(s) 699
Tru1I TTAA 3 cut(s) 207, 546, 744
Tru9I TTAA 3 cut(s) 207, 546, 744
TscAI CASTG 3 cut(s) 594, 772, 916
TseFI GTSAC 4 cut(s) 589, 925, 989, 1164
TseI GCWGC 2 cut(s) 441, 470
Tsp45I GTSAC 4 cut(s) 589, 925, 989, 1164
TspDTI ATGAA 2 cut(s) 18, 283
TspGWI ACGGA 2 cut(s) 77, 585
TspRI CASTG 3 cut(s) 594, 772, 916
Tth111I GACNNNGTC 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 710
VpaK11BI GGWCC 3 cut(s) 572, 596, 770
VspI ATTAAT 1 cut(s) 546
XapI RAATTY 2 cut(s) 1133, 1147
XcmI CCANNNNNNNNNTGG 1 cut(s) 711
XmiI GTMKAC 1 cut(s) 584
XspI CTAG 3 cut(s) 318, 347, 1011
ZraI GACGTC 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.