AT4G19750

Contains the following InterPro domains Glycoside hydrolase, family 18, catalytic domain (InterPro IPR001223), Chitinase II (InterPro IPR011583), Glycoside hydrolase, catalytic core (InterPro IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro IPR013781)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
10745682 .. 10747127
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19750.1

Sequence Viewer

Length: 1089 bp
ATGGCTGATCAAACTCAGTTTCTCCGAACCAACTCGATCGTAAAAGCTTCCTACTGGGTTGTGAAGCCGGAAAACGACTTCCCTGCCGGAAACATTGACTCAACTCGCTTCACCCATCTTTTCTGCGCCTTCGCTGACGTCGACTCTTCCACCCATGAAGTCACTATCTCTGCCGCGAACTCATGCCAAGTCTCCAGCTTTACCCATACCGTTAAAGACAAAAACACGGACGTGCAAACTCTCTTGTCGATCGGGGGTAAAGATGCAGACAAAGCTGTGTTAGCGTCCATGGCAAGTAACAGCAAAAACCGGAAAGCGTTCATTGATTCCTCGATCGATATCGCTAGGAAGAAGGATTTCTACGGCCTCGACCTAGCTTGGGAGTATCCAAGCAATGACGTGGAGATGGCCAACTTTGGGAAACTCGTGAAAGAATGGCGAGCTGCGGTTGTGGAAGAGTCTGACAGAACTAATCAACTGCCTTTGCTCTTGACGGCTGCGGTTTACTACTCCCCGGATTACTATGGTGAGGAGTACCCGGTTCAAGCCATTGCCGACAATTTGGATTTTGTTAACATTATGGCCTACGATTTTTATGGACCGGGTTGGTCGCCAGTGACCGGGCCACCCGCTGCTCTATTTGATCCTTCCAACCCAGCAGGTCGAAGTGGCGACTCCGGGTTGAGTAAGTGGCTTGAGGCTAAACTTCCGGCGAAGAAAGCAGTGTTAGGATTCTCATACTGTGGTTGGGCTTGGACTCTCGAGGACGCCGAGAATAACGGCTATGATGCAGCCACCGATGGAGCAGCGATATCATCGGACGGTTCTATAACCTATGCCAAGATAAGGAACTATATTATCGATAACGGAGCAGCCACATTCCATGATCCGGCGGTGATCGGATTCTATTGTTACGTCGGGACCACGTGGATTGGTTACGATGATAATCAGAGTATTGTGTCCAAAGTGAGATACGCTAAGCTAAAAGGTTTGCTTGGTTACTTCTCGTGGCATGTTGGAGCTGACTATAATTGTGGTCTTTCTCGTGCAGGTTCGTTTTCATTAACTTTCTTTTTACTATATCCTTAA

Protein Analysis

362

Amino Acids

39.73

Weight (kDa)

4.86

Isoelectric Point (pI)

29.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 16 - 342 1.2e-65 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
Acc36I ACCTGC 2 cut(s) 650, 1040
AccI GTMKAC 1 cut(s) 141
AccII CGCG 1 cut(s) 176
AciI CCGC 5 cut(s) 174, 446, 500, 630, 893
AclWI GGATC 2 cut(s) 638, 881
AcoI YGGCCR 1 cut(s) 408
AcvI CACGTG 1 cut(s) 927
AcyI GRCGYC 2 cut(s) 138, 768
AfaI GTAC 1 cut(s) 536
AfiI CCNNNNNNNGG 5 cut(s) 379, 417, 620, 846, 889
AgsI TTSAA 1 cut(s) 545
AjiI CACGTC 2 cut(s) 232, 400
AleI CACNNNNGTG 1 cut(s) 230
AluBI AGCT 7 cut(s) 47, 198, 275, 377, 443, 982, 1022
AluI AGCT 7 cut(s) 47, 198, 275, 377, 443, 982, 1022
Alw26I GTCTC 1 cut(s) 196
AlwI GGATC 2 cut(s) 638, 881
Ama87I CYCGRG 1 cut(s) 761
AoxI GGCC 4 cut(s) 364, 408, 582, 623
ApeKI GCWGC 6 cut(s) 443, 497, 632, 791, 806, 872
Asp700I GAANNNNTTC 2 cut(s) 317, 356
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 3 cut(s) 599, 623, 921
AsuC2I CCSGG 5 cut(s) 515, 539, 603, 622, 679
AsuHPI GGTGA 3 cut(s) 103, 539, 907
AvaI CYCGRG 1 cut(s) 761
AvaII GGWCC 2 cut(s) 599, 921
BalI TGGCCA 1 cut(s) 410
BarI GAAGNNNNNNTAC 2 cut(s) 344, 376
BauI CACGAG 3 cut(s) 425, 1006, 1044
BbrPI CACGTG 1 cut(s) 927
BbvI GCAGC 6 cut(s) 430, 484, 619, 803, 818, 884
BccI CCATC 3 cut(s) 123, 400, 794
BceAI ACGGC 3 cut(s) 379, 510, 796
BcgI CGANNNNNNTGC 2 cut(s) 65, 99
BciVI GTATCC 1 cut(s) 396
BclI TGATCA 1 cut(s) 7
BcnI CCSGG 5 cut(s) 515, 539, 603, 622, 679
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 2 cut(s) 345, 374
BfuAI ACCTGC 2 cut(s) 650, 1040
BfuI GTATCC 1 cut(s) 396
BisI GCNGC 7 cut(s) 174, 444, 498, 633, 792, 807, 873
BlpI GCTNAGC 1 cut(s) 978
BlsI GCNGC 7 cut(s) 175, 445, 499, 634, 793, 808, 874
Bme1390I CCNGG 5 cut(s) 515, 539, 603, 622, 679
Bme18I GGWCC 2 cut(s) 599, 921
BmeT110I CYCGRG 1 cut(s) 761
BmgBI CACGTC 2 cut(s) 232, 400
BmgT120I GGNCC 3 cut(s) 599, 623, 921
BmiI GGNNCC 1 cut(s) 922
BmrFI CCNGG 5 cut(s) 515, 539, 603, 622, 679
BmrI ACTGGG 1 cut(s) 64
BmsI GCATC 2 cut(s) 253, 778
BmuI ACTGGG 1 cut(s) 64
BpmI CTGGAG 1 cut(s) 178
Bpu1102I GCTNAGC 1 cut(s) 978
BpuEI CTTGAG 1 cut(s) 716
BpuMI CCSGG 5 cut(s) 515, 539, 603, 622, 679
Bsa29I ATCGAT 2 cut(s) 336, 861
BsaAI YACGTR 1 cut(s) 927
BsaBI GATNNNNATC 2 cut(s) 338, 945
BsaHI GRCGYC 2 cut(s) 138, 768
BsaJI CCNNGG 2 cut(s) 288, 513
BsaWI WCCGGW 1 cut(s) 309
Bsc4I CCNNNNNNNGG 5 cut(s) 379, 417, 620, 846, 889
Bse1I ACTGG 2 cut(s) 59, 614
Bse3DI GCAATG 2 cut(s) 400, 549
Bse8I GATNNNNATC 2 cut(s) 338, 945
BseCI ATCGAT 2 cut(s) 336, 861
BseDI CCNNGG 2 cut(s) 288, 513
BseJI GATNNNNATC 2 cut(s) 338, 945
BseLI CCNNNNNNNGG 5 cut(s) 379, 417, 620, 846, 889
BseMI GCAATG 2 cut(s) 400, 549
BseMII CTCAG 1 cut(s) 29
BseNI ACTGG 2 cut(s) 59, 614
BseRI GAGGAG 1 cut(s) 545
BseXI GCAGC 6 cut(s) 430, 484, 619, 803, 818, 884
BseYI CCCAGC 1 cut(s) 655
BsgI GTGCAG 1 cut(s) 1068
Bsh1236I CGCG 1 cut(s) 176
Bsh1285I CGRYCG 3 cut(s) 39, 252, 336
BshFI GGCC 4 cut(s) 366, 410, 584, 625
BshVI ATCGAT 2 cut(s) 336, 861
BsiEI CGRYCG 3 cut(s) 39, 252, 336
BsiHKCI CYCGRG 1 cut(s) 761
BslFI GGGAC 1 cut(s) 934
BslI CCNNNNNNNGG 5 cut(s) 379, 417, 620, 846, 889
BsmAI GTCTC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 934
BsnI GGCC 4 cut(s) 366, 410, 584, 625
BsoBI CYCGRG 1 cut(s) 761
Bsp143I GATC 7 cut(s) 7, 36, 249, 333, 643, 886, 897
Bsp1720I GCTNAGC 1 cut(s) 978
Bsp19I CCATGG 1 cut(s) 288
BspACI CCGC 5 cut(s) 174, 446, 500, 630, 893
BspANI GGCC 4 cut(s) 366, 410, 584, 625
BspCNI CTCAG 1 cut(s) 28
BspDI ATCGAT 2 cut(s) 336, 861
BspFNI CGCG 1 cut(s) 176
BspLI GGNNCC 1 cut(s) 922
BspMI ACCTGC 2 cut(s) 650, 1040
BspPI GGATC 2 cut(s) 638, 881
BsrDI GCAATG 2 cut(s) 400, 549
BsrI ACTGG 2 cut(s) 59, 614
BssECI CCNNGG 2 cut(s) 288, 513
BssMI GATC 7 cut(s) 7, 36, 249, 333, 643, 886, 897
BssNI GRCGYC 2 cut(s) 138, 768
BssSI CACGAG 3 cut(s) 425, 1006, 1044
BssT1I CCWWGG 1 cut(s) 288
Bst2BI CACGAG 3 cut(s) 425, 1006, 1044
Bst4CI ACNGT 3 cut(s) 211, 743, 824
Bst6I CTCTTC 2 cut(s) 151, 450
BstACI GRCGYC 2 cut(s) 138, 768
BstBAI YACGTR 1 cut(s) 927
BstC8I GCNNGC 1 cut(s) 441
BstDEI CTNAG 2 cut(s) 15, 978
BstDSI CCRYGG 1 cut(s) 288
BstFNI CGCG 1 cut(s) 176
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 7 cut(s) 10, 39, 252, 336, 646, 889, 900
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 7 cut(s) 7, 36, 249, 333, 643, 886, 897
BstMCI CGRYCG 3 cut(s) 39, 252, 336
BstMWI GCNNNNNNNGC 4 cut(s) 272, 281, 290, 719
BstNSI RCATGY 1 cut(s) 1016
BstSCI CCNGG 5 cut(s) 513, 537, 601, 620, 677
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 6 cut(s) 430, 484, 619, 803, 818, 884
Bsu15I ATCGAT 2 cut(s) 336, 861
BsuI GTATCC 1 cut(s) 396
BsuRI GGCC 4 cut(s) 366, 410, 584, 625
BsuTUI ATCGAT 2 cut(s) 336, 861
BtgI CCRYGG 1 cut(s) 288
BtrI CACGTC 2 cut(s) 232, 400
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 2 cut(s) 621, 729
BveI ACCTGC 2 cut(s) 650, 1040
Cac8I GCNNGC 1 cut(s) 441
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 3 cut(s) 599, 623, 921
ClaI ATCGAT 2 cut(s) 336, 861
CseI GACGC 2 cut(s) 273, 776
Csp6I GTAC 1 cut(s) 535
CspCI CAANNNNNGTGG 2 cut(s) 913, 948
CviAII CATG 5 cut(s) 155, 183, 289, 884, 1013
CviQI GTAC 1 cut(s) 535
DdeI CTNAG 2 cut(s) 15, 978
DpnI GATC 7 cut(s) 9, 38, 251, 335, 645, 888, 899
DpnII GATC 7 cut(s) 7, 36, 249, 333, 643, 886, 897
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 2 cut(s) 151, 450
EarI CTCTTC 2 cut(s) 151, 450
Eco130I CCWWGG 1 cut(s) 288
Eco32I GATATC 2 cut(s) 340, 813
Eco47I GGWCC 2 cut(s) 599, 921
Eco72I CACGTG 1 cut(s) 927
Eco88I CYCGRG 1 cut(s) 761
EcoRV GATATC 2 cut(s) 340, 813
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 5 cut(s) 158, 186, 292, 887, 1016
FalI AAGNNNNNCTT 2 cut(s) 978, 1010
FaqI GGGAC 1 cut(s) 934
FatI CATG 5 cut(s) 154, 182, 288, 883, 1012
FauI CCCGC 1 cut(s) 637
FbaI TGATCA 1 cut(s) 7
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 7 cut(s) 174, 444, 498, 633, 792, 807, 873
Fsp4HI GCNGC 7 cut(s) 174, 444, 498, 633, 792, 807, 873
FspBI CTAG 2 cut(s) 345, 374
GlaI GCGC 1 cut(s) 127
GluI GCNGC 7 cut(s) 174, 444, 498, 633, 792, 807, 873
GsaI CCCAGC 1 cut(s) 659
GsuI CTGGAG 1 cut(s) 178
HaeIII GGCC 4 cut(s) 366, 410, 584, 625
HgaI GACGC 2 cut(s) 273, 776
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 2 cut(s) 138, 768
Hin1II CATG 5 cut(s) 158, 186, 292, 887, 1016
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HincII GTYRAC 2 cut(s) 142, 574
HindII GTYRAC 2 cut(s) 142, 574
HindIII AAGCTT 1 cut(s) 45
HinfI GANTC 8 cut(s) 98, 143, 326, 458, 674, 732, 757, 903
HpaI GTTAAC 1 cut(s) 574
HphI GGTGA 3 cut(s) 103, 539, 907
Hpy166II GTNNAC 3 cut(s) 142, 505, 574
Hpy188I TCNGA 5 cut(s) 26, 463, 820, 902, 951
Hpy188III TCNNGA 4 cut(s) 427, 490, 761, 919
Hpy8I GTNNAC 3 cut(s) 142, 505, 574
Hpy99I CGWCG 2 cut(s) 143, 920
HpyAV CCTTC 3 cut(s) 139, 346, 657
HpyCH4III ACNGT 3 cut(s) 211, 743, 824
HpyCH4IV ACGT 5 cut(s) 138, 231, 399, 915, 926
HpyCH4V TGCA 4 cut(s) 235, 266, 791, 1049
HpyF10VI GCNNNNNNNGC 4 cut(s) 272, 281, 290, 719
HpyF3I CTNAG 2 cut(s) 15, 978
HpySE526I ACGT 5 cut(s) 138, 231, 399, 915, 926
Hsp92I GRCGYC 2 cut(s) 138, 768
Hsp92II CATG 5 cut(s) 158, 186, 292, 887, 1016
HspAI GCGC 1 cut(s) 126
Ksp22I TGATCA 1 cut(s) 7
KspAI GTTAAC 1 cut(s) 574
Kzo9I GATC 7 cut(s) 7, 36, 249, 333, 643, 886, 897
LmnI GCTCC 3 cut(s) 803, 869, 1019
Lsp1109I GCAGC 6 cut(s) 430, 484, 619, 803, 818, 884
LweI GCATC 2 cut(s) 253, 778
MaeI CTAG 2 cut(s) 345, 374
MaeII ACGT 5 cut(s) 138, 231, 399, 915, 926
MaeIII GTNAC 6 cut(s) 160, 296, 616, 911, 935, 998
MalI GATC 7 cut(s) 9, 38, 251, 335, 645, 888, 899
MboI GATC 7 cut(s) 7, 36, 249, 333, 643, 886, 897
MboII GAAGA 4 cut(s) 138, 361, 467, 727
MlsI TGGCCA 1 cut(s) 410
MluCI AATT 2 cut(s) 559, 1030
MluNI TGGCCA 1 cut(s) 410
MlyI GAGTC 5 cut(s) 92, 137, 467, 668, 751
MmeI TCCRAC 2 cut(s) 675, 997
MnlI CCTC 5 cut(s) 340, 377, 523, 691, 757
Mox20I TGGCCA 1 cut(s) 410
MroXI GAANNNNTTC 2 cut(s) 317, 356
MscI TGGCCA 1 cut(s) 410
MseI TTAA 4 cut(s) 213, 573, 1064, 1087
MslI CAYNNNNRTG 1 cut(s) 230
Msp20I TGGCCA 1 cut(s) 410
MspA1I CMGCKG 1 cut(s) 632
MspR9I CCNGG 5 cut(s) 515, 539, 603, 622, 679
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 4 cut(s) 272, 281, 290, 719
NciI CCSGG 5 cut(s) 515, 539, 603, 622, 679
NcoI CCATGG 1 cut(s) 288
NdeII GATC 7 cut(s) 7, 36, 249, 333, 643, 886, 897
NlaIII CATG 5 cut(s) 158, 186, 292, 887, 1016
NlaIV GGNNCC 1 cut(s) 922
NmeAIII GCCGAG 1 cut(s) 796
NmuCI GTSAC 2 cut(s) 160, 616
NspI RCATGY 1 cut(s) 1016
OliI CACNNNNGTG 1 cut(s) 230
PaeR7I CTCGAG 1 cut(s) 761
PcsI WCGNNNNNNNCGW 2 cut(s) 138, 768
PdmI GAANNNNTTC 2 cut(s) 317, 356
PfeI GAWTC 3 cut(s) 326, 732, 903
PkrI GCNGC 7 cut(s) 175, 445, 499, 634, 793, 808, 874
Ple19I CGATCG 3 cut(s) 39, 252, 336
PleI GAGTC 5 cut(s) 92, 137, 466, 668, 751
PmaCI CACGTG 1 cut(s) 927
PmlI CACGTG 1 cut(s) 927
PpsI GAGTC 5 cut(s) 92, 137, 466, 668, 751
Ppu21I YACGTR 1 cut(s) 927
PspCI CACGTG 1 cut(s) 927
PspFI CCCAGC 1 cut(s) 655
PspN4I GGNNCC 1 cut(s) 922
PspPI GGNCC 3 cut(s) 599, 623, 921
PvuI CGATCG 3 cut(s) 39, 252, 336
RsaI GTAC 1 cut(s) 536
RsaNI GTAC 1 cut(s) 535
RseI CAYNNNNRTG 1 cut(s) 230
SalI GTCGAC 1 cut(s) 140
SaqAI TTAA 4 cut(s) 213, 573, 1064, 1087
SatI GCNGC 7 cut(s) 174, 444, 498, 633, 792, 807, 873
Sau3AI GATC 7 cut(s) 7, 36, 249, 333, 643, 886, 897
Sau96I GGNCC 3 cut(s) 599, 623, 921
SchI GAGTC 5 cut(s) 92, 137, 467, 668, 751
ScrFI CCNGG 5 cut(s) 515, 539, 603, 622, 679
SfaNI GCATC 2 cut(s) 253, 778
Sfr274I CTCGAG 1 cut(s) 761
SinI GGWCC 2 cut(s) 599, 921
SlaI CTCGAG 1 cut(s) 761
SmiMI CAYNNNNRTG 1 cut(s) 230
SmlI CTYRAG 2 cut(s) 695, 761
SmoI CTYRAG 2 cut(s) 695, 761
Sse9I AATT 2 cut(s) 559, 1030
SsiI CCGC 5 cut(s) 174, 446, 500, 630, 893
SspMI CTAG 2 cut(s) 345, 374
StyD4I CCNGG 5 cut(s) 513, 537, 601, 620, 677
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 3 cut(s) 211, 743, 824
TaiI ACGT 5 cut(s) 141, 234, 402, 918, 929
TaqI TCGA 9 cut(s) 35, 141, 248, 332, 336, 369, 664, 762, 861
TasI AATT 2 cut(s) 559, 1030
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 3 cut(s) 326, 732, 903
Tru1I TTAA 4 cut(s) 213, 573, 1064, 1087
Tru9I TTAA 4 cut(s) 213, 573, 1064, 1087
TscAI CASTG 2 cut(s) 621, 729
TseFI GTSAC 2 cut(s) 160, 616
TseI GCWGC 6 cut(s) 443, 497, 632, 791, 806, 872
Tsp45I GTSAC 2 cut(s) 160, 616
TspDTI ATGAA 3 cut(s) 171, 310, 1050
TspGWI ACGGA 2 cut(s) 242, 882
TspRI CASTG 2 cut(s) 621, 729
VpaK11BI GGWCC 2 cut(s) 599, 921
XceI RCATGY 1 cut(s) 1016
XhoI CTCGAG 1 cut(s) 761
XmiI GTMKAC 1 cut(s) 141
XmnI GAANNNNTTC 2 cut(s) 317, 356
XspI CTAG 2 cut(s) 345, 374
ZraI GACGTC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.