Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004690

Physical Location & Seq

Genomic Coordinates Reverse (-)

26532076 .. 26532586

Gene Structure 511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033389

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCTCCTCCAGCCCAATTCCGGCACGATTCCGACCGGACCCGCCTTCGTCTTCTCCAGTCACTCACCTGCAGCCCATCTCCGACAGGTCCCAGCCCCGATGCAGCAACACCCCTACTTGCTCGTCCGTACCGACCTCATCCATGCCTGCAGGTGCCCCACGCCGGTGCTCTCCACCGTCACAGCCACCATCTCTCGACAAAATCCAGCTACTCCACCGAGATCCGAAATCCTCATCTGCACCATCGGCGATTCACCACCACCTGCAGCAACTGGCTCCGGCTCAGCCTGGACAGCACTTACAAATCACCGGTGCAGCAGAAGCTGCGTTTCAGGACGGGCAGGGAGTCGGCGGAGTCAGAGGCGACGATGGGCATGGCATGGAGGGCCGCGACCTGAGGCTGGAGGAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

14.62

Weight (kDa)

11.45

Isoelectric Point (pI)

84.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19720 AT4G19740 AT4G19750 AT4G19760 AT4G19770 AT4G19800 AT4G19810 AT4G19810 AT4G19820
fragaria_vesca	FvH4_1g01321 FvH4_1g01362 FvH4_1g01382
malus_domestica	MD02G1011100.v1.1 MD15G1156100.v1.1
prunus_persica	Prupe.4G180800_v2.0.a1 Prupe.7G258500_v2.0.a1 Prupe.7G259000_v2.0.a1
pyrus_communis	pycom02g01000
rosa_chinensis	RchiOBHm_Chr2g0086161
rosa_laevigata	RLG00000027969 RLG00000033389
rosa_multiflora	Rmu_co8454935.1_g000002 Rmu_sc0004510.1_g000010 Rmu_sc0004948.1_g000003 Rmu_sc0004948.1_g000021
rosa_roxburghii	Rroxscaffold_152G00434840
rosa_rugosa	Rorug01G0466300
rosa_samantha	Rh2AG016100 Rh2CG017000 Rh2DG018100
rosa_wichuraiana	Rw2G001390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	76, 141, 271
Acc36I	ACCTGC	3 cut(s)	76, 141, 271
AccB1I	GGYRCC	1 cut(s)	153
AccII	CGCG	1 cut(s)	391
AciI	CCGC	3 cut(s)	42, 352, 389
AclWI	GGATC	1 cut(s)	216
AfaI	GTAC	1 cut(s)	130
AfiI	CCNNNNNNNGG	3 cut(s)	20, 163, 401
AgeI	ACCGGT	1 cut(s)	309
AjnI	CCWGG	1 cut(s)	287
AleI	CACNNNNGTG	1 cut(s)	164
AluBI	AGCT	2 cut(s)	209, 324
AluI	AGCT	2 cut(s)	209, 324
Alw21I	GWGCWC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	216
AlwNI	CAGNNNCTG	2 cut(s)	272, 324
AoxI	GGCC	1 cut(s)	386
ApeKI	GCWGC	5 cut(s)	71, 103, 266, 315, 324
AsiGI	ACCGGT	1 cut(s)	309
AspS9I	GGNCC	3 cut(s)	38, 88, 386
AsuHPI	GGTGA	3 cut(s)	57, 246, 299
AvaII	GGWCC	2 cut(s)	38, 88
AxyI	CCTNAGG	1 cut(s)	396
BaeGI	GKGCMC	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	5 cut(s)	83, 115, 278, 311, 327
BccI	CCATC	4 cut(s)	84, 197, 251, 363
BciT130I	CCWGG	1 cut(s)	289
BfmI	CTRYAG	3 cut(s)	69, 148, 264
BfuAI	ACCTGC	3 cut(s)	76, 141, 271
BisI	GCNGC	6 cut(s)	72, 104, 267, 316, 325, 389
BlpI	GCTNAGC	1 cut(s)	283
BlsI	GCNGC	6 cut(s)	73, 105, 268, 317, 326, 390
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	2 cut(s)	38, 88
BmgT120I	GGNCC	3 cut(s)	38, 88, 386
BmiI	GGNNCC	4 cut(s)	40, 90, 155, 277
BmrFI	CCNGG	1 cut(s)	289
BmsI	GCATC	1 cut(s)	90
BpiI	GAAGAC	1 cut(s)	43
BpmI	CTGGAG	1 cut(s)	40
Bpu1102I	GCTNAGC	1 cut(s)	283
BsaWI	WCCGGW	2 cut(s)	35, 309
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 163, 401
Bse118I	RCCGGY	2 cut(s)	163, 309
Bse1I	ACTGG	2 cut(s)	57, 277
Bse21I	CCTNAGG	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	289
BseGI	GGATG	1 cut(s)	138
BseLI	CCNNNNNNNGG	3 cut(s)	20, 163, 401
BseMII	CTCAG	2 cut(s)	297, 387
BseNI	ACTGG	2 cut(s)	57, 277
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	5 cut(s)	83, 115, 278, 311, 327
BseYI	CCCAGC	1 cut(s)	91
BsgI	GTGCAG	2 cut(s)	223, 334
Bsh1236I	CGCG	1 cut(s)	391
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	388
BshNI	GGYRCC	1 cut(s)	153
BshTI	ACCGGT	1 cut(s)	309
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	5 cut(s)	21, 36, 164, 279, 310
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	3 cut(s)	20, 163, 401
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	388
Bsp1286I	GDGCHC	2 cut(s)	158, 171
Bsp143I	GATC	1 cut(s)	221
Bsp1720I	GCTNAGC	1 cut(s)	283
BspACI	CCGC	3 cut(s)	42, 352, 389
BspANI	GGCC	1 cut(s)	388
BspCNI	CTCAG	2 cut(s)	296, 388
BspFNI	CGCG	1 cut(s)	391
BspLI	GGNNCC	4 cut(s)	40, 90, 155, 277
BspMAI	CTGCAG	3 cut(s)	73, 152, 268
BspMI	ACCTGC	3 cut(s)	76, 141, 271
BspPI	GGATC	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	153
BsrFI	RCCGGY	2 cut(s)	163, 309
BsrI	ACTGG	2 cut(s)	57, 277
BssAI	RCCGGY	2 cut(s)	163, 309
BssMI	GATC	1 cut(s)	221
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	1 cut(s)	178
BstAPI	GCANNNNNTGC	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	148
BstDEI	CTNAG	2 cut(s)	283, 396
BstF5I	GGATG	1 cut(s)	138
BstFNI	CGCG	1 cut(s)	391
BstKTI	GATC	1 cut(s)	224
BstMBI	GATC	1 cut(s)	221
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 246, 293, 321, 324, 385
BstNI	CCWGG	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	287
BstSFI	CTRYAG	3 cut(s)	69, 148, 264
BstSLI	GKGCMC	1 cut(s)	158
BstUI	CGCG	1 cut(s)	391
BstV1I	GCAGC	5 cut(s)	83, 115, 278, 311, 327
BstV2I	GAAGAC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
Bsu36I	CCTNAGG	1 cut(s)	396
BsuRI	GGCC	1 cut(s)	388
BtsCI	GGATG	1 cut(s)	138
BveI	ACCTGC	3 cut(s)	76, 141, 271
Cac8I	GCNNGC	1 cut(s)	148
CaiI	CAGNNNCTG	2 cut(s)	272, 324
Cfr10I	RCCGGY	2 cut(s)	163, 309
Cfr13I	GGNCC	3 cut(s)	38, 88, 386
Csp6I	GTAC	1 cut(s)	129
CspAI	ACCGGT	1 cut(s)	309
CviAII	CATG	3 cut(s)	143, 375, 380
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	2 cut(s)	283, 396
DpnI	GATC	1 cut(s)	223
DpnII	GATC	1 cut(s)	221
EciI	GGCGGA	1 cut(s)	367
Eco47I	GGWCC	2 cut(s)	38, 88
Eco81I	CCTNAGG	1 cut(s)	396
EcoO109I	RGGNCCY	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	287
FaeI	CATG	3 cut(s)	146, 378, 383
FaiI	YATR	3 cut(s)	144, 376, 381
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	3 cut(s)	142, 374, 379
FauI	CCCGC	1 cut(s)	49
Fnu4HI	GCNGC	6 cut(s)	72, 104, 267, 316, 325, 389
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	6 cut(s)	72, 104, 267, 316, 325, 389
GluI	GCNGC	6 cut(s)	72, 104, 267, 316, 325, 389
GsaI	CCCAGC	1 cut(s)	95
GsuI	CTGGAG	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	388
HapII	CCGG	5 cut(s)	21, 36, 164, 279, 310
Hin1II	CATG	3 cut(s)	146, 378, 383
HinfI	GANTC	5 cut(s)	28, 251, 346, 355, 408
HpaII	CCGG	5 cut(s)	21, 36, 164, 279, 310
HphI	GGTGA	3 cut(s)	57, 246, 299
Hpy188I	TCNGA	4 cut(s)	33, 83, 226, 360
Hpy188III	TCNNGA	2 cut(s)	195, 333
Hpy99I	CGWCG	1 cut(s)	369
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	6 cut(s)	71, 103, 150, 240, 266, 315
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 246, 293, 321, 324, 385
HpyF3I	CTNAG	2 cut(s)	283, 396
Hsp92II	CATG	3 cut(s)	146, 378, 383
Kzo9I	GATC	1 cut(s)	221
LmnI	GCTCC	2 cut(s)	9, 281
Lsp1109I	GCAGC	5 cut(s)	83, 115, 278, 311, 327
LweI	GCATC	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	59, 178
MalI	GATC	1 cut(s)	223
MboI	GATC	1 cut(s)	221
MboII	GAAGA	1 cut(s)	43
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	2 cut(s)	158, 171
MluCI	AATT	1 cut(s)	16
MlyI	GAGTC	2 cut(s)	355, 364
MmeI	TCCRAC	2 cut(s)	56, 106
MnlI	CCTC	7 cut(s)	17, 146, 242, 354, 377, 391, 398
MslI	CAYNNNNRTG	1 cut(s)	164
MspI	CCGG	5 cut(s)	21, 36, 164, 279, 310
MspR9I	CCNGG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	289
MvnI	CGCG	1 cut(s)	391
MwoI	GCNNNNNNNGC	6 cut(s)	10, 246, 293, 321, 324, 385
NdeII	GATC	1 cut(s)	221
NlaIII	CATG	3 cut(s)	146, 378, 383
NlaIV	GGNNCC	4 cut(s)	40, 90, 155, 277
NmuCI	GTSAC	2 cut(s)	59, 178
OliI	CACNNNNGTG	1 cut(s)	164
PaqCI	CACCTGC	3 cut(s)	76, 141, 271
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	3 cut(s)	28, 251, 408
PinAI	ACCGGT	1 cut(s)	309
PkrI	GCNGC	6 cut(s)	73, 105, 268, 317, 326, 390
PleI	GAGTC	2 cut(s)	354, 363
PpsI	GAGTC	2 cut(s)	354, 363
PpuMI	RGGWCCY	1 cut(s)	88
Psp5II	RGGWCCY	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	287
PspFI	CCCAGC	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	4 cut(s)	40, 90, 155, 277
PspPI	GGNCC	3 cut(s)	38, 88, 386
PspPPI	RGGWCCY	1 cut(s)	88
PstI	CTGCAG	3 cut(s)	73, 152, 268
PstNI	CAGNNNCTG	2 cut(s)	272, 324
PsuI	RGATCY	1 cut(s)	221
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
RseI	CAYNNNNRTG	1 cut(s)	164
SatI	GCNGC	6 cut(s)	72, 104, 267, 316, 325, 389
Sau3AI	GATC	1 cut(s)	221
Sau96I	GGNCC	3 cut(s)	38, 88, 386
SbfI	CCTGCAGG	1 cut(s)	152
SchI	GAGTC	2 cut(s)	355, 364
ScrFI	CCNGG	1 cut(s)	289
SdaI	CCTGCAGG	1 cut(s)	152
SduI	GDGCHC	2 cut(s)	158, 171
SetI	ASST	8 cut(s)	70, 90, 138, 155, 211, 265, 326, 397
SfaNI	GCATC	1 cut(s)	90
SfcI	CTRYAG	3 cut(s)	69, 148, 264
SgrAI	CRCCGGYG	2 cut(s)	163, 309
SinI	GGWCC	2 cut(s)	38, 88
SmiMI	CAYNNNNRTG	1 cut(s)	164
Sse8387I	CCTGCAGG	1 cut(s)	152
Sse9I	AATT	1 cut(s)	16
SsiI	CCGC	3 cut(s)	42, 352, 389
StyD4I	CCNGG	1 cut(s)	287
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	196
TasI	AATT	1 cut(s)	16
TauI	GCSGC	1 cut(s)	391
TfiI	GAWTC	3 cut(s)	28, 251, 408
TseFI	GTSAC	2 cut(s)	59, 178
TseI	GCWGC	5 cut(s)	71, 103, 266, 315, 324
Tsp45I	GTSAC	2 cut(s)	59, 178
TspGWI	ACGGA	1 cut(s)	116
VpaK11BI	GGWCC	2 cut(s)	38, 88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.