AT4G19760

Contains the following InterPro domains Glycoside hydrolase, family 18, catalytic domain (InterPro IPR001223), Chitinase II (InterPro IPR011583), Glycoside hydrolase, catalytic core (InterPro IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro IPR013781)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
10750381 .. 10752028
1648 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19760.1

Sequence Viewer

Length: 1110 bp
ATGGCTGATCAAACTCAGTTTCTCCGAACCAACTCGATCGTAAAAGCTTCCTACTGGTTTCCGGATGGCAAATCCCAATCACCCGAGTGTTTAAGCCAAGGAACCCCATCCTCGTTTATTGACTCAACTCTCTTCACTCACCTCTTCTGCGCTTTCGCTGACGTCGACTCTTCCACCCATGAAGTCACTATCTCTGCCGCGAACTCATACCAATTCTCCAGCTTTACCGAAACCGTTAAAGAGAAAAACACGGACGTGCAAACTCTCTTGTCGATCGGTGGTAAAGATGCAGACAAAGCTGTGTTAGCGTCCATGGCAAGTAACAGCAAAAACCGGAAAGCGTTCATTGATTCCTCGATCGATATCGCTAGGAAGAAGGATTTCTACGGCCTCGACCTAGCTTGGGAGTATCCGAGCAATGACGTGGAGATGACCAACTTTGGGAAACTCCTGGAAGAATGGCGAGCGGCGGTTGTGGAAGAGTCTGACAAAACTAATCAACTGCCTTTGCTCTTGACGGCTGCGGTTTACTACTCCCCGCAATACGATGGTGTGGAGTACCCGGTAAAAGCCATTGCCGACAATTTGGATTTTGTTAACATAATGGCCTACGATTTTTATGGACCGGGTTGGTCGCCGGTGACGGGGCCACCCGCTGCCCTGTTTCATGATCCTTCTAACCCAGCAGGTCGAAGCGGCAACTCCGGGTTGAGGAAATGGCTTGATGAGGCTAAACTTCCGCCAAAGAAAGCAGTGTTAGGGTTCCCATACTGTGGATGGGCTTGGACTCTCGAAGACGCCGAGAATAACGGCTATGATGCAGCCACCGATGGAGCAGCGATATCACCCGACGGTTCTATAACCTATGCCAAGATAAGGAACTATATTGTCGATAACGGAGCAGCCACATTCCATGATCCGGCGGTGATCGGCTTCTATTGCTACGTGGGCAACACGTGGATTGGTTACGATGATAATCAGAGTATTGTGTACAAAGTGAAATACGCTAAGTTTACTGGTCTGCTTGGTTACTTCTCGTGGCATGTTGGAGCTGACTATAATTGCGGTCTCTCTCGTGCAGCATCAATAGCATGGGATACTACGGAGTAA

Protein Analysis

369

Amino Acids

40.59

Weight (kDa)

4.71

Isoelectric Point (pI)

33.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 18 - 352 2e-66 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 165
Acc36I ACCTGC 1 cut(s) 677
AccB7I CCANNNNNTGG 1 cut(s) 773
AccBSI CCGCTC 1 cut(s) 467
AccI GTMKAC 1 cut(s) 165
AccII CGCG 1 cut(s) 200
AccIII TCCGGA 1 cut(s) 61
AclWI GGATC 2 cut(s) 665, 911
AcvI CACGTG 1 cut(s) 957
AcyI GRCGYC 2 cut(s) 162, 798
AfaI GTAC 2 cut(s) 560, 992
AfiI CCNNNNNNNGG 7 cut(s) 403, 441, 644, 711, 773, 876, 919
AflIII ACRYGT 1 cut(s) 954
AjiI CACGTC 2 cut(s) 256, 424
AjnI CCWGG 1 cut(s) 450
AleI CACNNNNGTG 2 cut(s) 85, 254
AluBI AGCT 5 cut(s) 47, 222, 299, 401, 1052
AluI AGCT 5 cut(s) 47, 222, 299, 401, 1052
Alw26I GTCTC 1 cut(s) 1073
AlwI GGATC 2 cut(s) 665, 911
Ama87I CYCGRG 1 cut(s) 83
Aor13HI TCCGGA 1 cut(s) 61
AoxI GGCC 3 cut(s) 388, 606, 647
ApeKI GCWGC 6 cut(s) 521, 656, 821, 836, 902, 1079
Asp700I GAANNNNTTC 2 cut(s) 341, 380
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 2 cut(s) 623, 647
AsuC2I CCSGG 3 cut(s) 563, 627, 706
AsuHPI GGTGA 5 cut(s) 72, 131, 652, 837, 937
AvaI CYCGRG 1 cut(s) 83
AvaII GGWCC 1 cut(s) 623
BarI GAAGNNNNNNTAC 2 cut(s) 368, 400
BauI CACGAG 2 cut(s) 1036, 1074
BbrPI CACGTG 1 cut(s) 957
BbsI GAAGAC 1 cut(s) 801
BbvI GCAGC 6 cut(s) 508, 643, 833, 848, 914, 1091
BccI CCATC 5 cut(s) 59, 115, 542, 771, 824
BceAI ACGGC 3 cut(s) 403, 534, 826
BciT130I CCWGG 1 cut(s) 452
BciVI GTATCC 2 cut(s) 420, 1090
BclI TGATCA 1 cut(s) 7
BcnI CCSGG 3 cut(s) 563, 627, 706
BcoDI GTCTC 1 cut(s) 1073
BfaI CTAG 2 cut(s) 369, 398
BfuAI ACCTGC 1 cut(s) 677
BfuI GTATCC 2 cut(s) 420, 1090
BisI GCNGC 9 cut(s) 198, 468, 522, 657, 697, 822, 837, 903, 1080
BlsI GCNGC 9 cut(s) 199, 469, 523, 658, 698, 823, 838, 904, 1081
Bme1390I CCNGG 4 cut(s) 452, 563, 627, 706
Bme18I GGWCC 1 cut(s) 623
BmeT110I CYCGRG 1 cut(s) 83
BmgBI CACGTC 2 cut(s) 256, 424
BmgT120I GGNCC 2 cut(s) 623, 647
BmiI GGNNCC 3 cut(s) 103, 648, 764
BmrFI CCNGG 4 cut(s) 452, 563, 627, 706
BmsI GCATC 3 cut(s) 277, 808, 1091
BpiI GAAGAC 1 cut(s) 801
BpmI CTGGAG 1 cut(s) 202
BpuMI CCSGG 3 cut(s) 563, 627, 706
Bsa29I ATCGAT 1 cut(s) 360
BsaAI YACGTR 2 cut(s) 946, 957
BsaBI GATNNNNATC 2 cut(s) 362, 975
BsaHI GRCGYC 2 cut(s) 162, 798
BsaI GGTCTC 1 cut(s) 1073
BsaJI CCNNGG 2 cut(s) 97, 312
BsaWI WCCGGW 2 cut(s) 61, 333
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 7 cut(s) 403, 441, 644, 711, 773, 876, 919
Bse118I RCCGGY 1 cut(s) 637
Bse1I ACTGG 2 cut(s) 59, 1021
Bse3DI GCAATG 2 cut(s) 424, 573
Bse8I GATNNNNATC 2 cut(s) 362, 975
BseAI TCCGGA 1 cut(s) 61
BseBI CCWGG 1 cut(s) 452
BseCI ATCGAT 1 cut(s) 360
BseDI CCNNGG 2 cut(s) 97, 312
BseGI GGATG 3 cut(s) 70, 107, 782
BseJI GATNNNNATC 2 cut(s) 362, 975
BseLI CCNNNNNNNGG 7 cut(s) 403, 441, 644, 711, 773, 876, 919
BseMI GCAATG 2 cut(s) 424, 573
BseMII CTCAG 1 cut(s) 29
BseNI ACTGG 2 cut(s) 59, 1021
BseXI GCAGC 6 cut(s) 508, 643, 833, 848, 914, 1091
BseYI CCCAGC 1 cut(s) 682
BsgI GTGCAG 1 cut(s) 1098
Bsh1236I CGCG 1 cut(s) 200
Bsh1285I CGRYCG 3 cut(s) 39, 276, 360
BshFI GGCC 3 cut(s) 390, 608, 649
BshVI ATCGAT 1 cut(s) 360
BsiEI CGRYCG 3 cut(s) 39, 276, 360
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 7 cut(s) 62, 334, 563, 626, 638, 705, 920
BslI CCNNNNNNNGG 7 cut(s) 403, 441, 644, 711, 773, 876, 919
BsmAI GTCTC 1 cut(s) 1073
BsnI GGCC 3 cut(s) 390, 608, 649
Bso31I GGTCTC 1 cut(s) 1073
BsoBI CYCGRG 1 cut(s) 83
Bsp13I TCCGGA 1 cut(s) 61
Bsp1407I TGTACA 1 cut(s) 990
Bsp143I GATC 7 cut(s) 7, 36, 273, 357, 670, 916, 927
Bsp19I CCATGG 1 cut(s) 312
BspANI GGCC 3 cut(s) 390, 608, 649
BspCNI CTCAG 1 cut(s) 28
BspDI ATCGAT 1 cut(s) 360
BspEI TCCGGA 1 cut(s) 61
BspFNI CGCG 1 cut(s) 200
BspHI TCATGA 1 cut(s) 667
BspLI GGNNCC 3 cut(s) 103, 648, 764
BspMI ACCTGC 1 cut(s) 677
BspPI GGATC 2 cut(s) 665, 911
BspTNI GGTCTC 1 cut(s) 1073
BsrBI CCGCTC 1 cut(s) 467
BsrDI GCAATG 2 cut(s) 424, 573
BsrFI RCCGGY 1 cut(s) 637
BsrGI TGTACA 1 cut(s) 990
BsrI ACTGG 2 cut(s) 59, 1021
BssAI RCCGGY 1 cut(s) 637
BssECI CCNNGG 2 cut(s) 97, 312
BssMI GATC 7 cut(s) 7, 36, 273, 357, 670, 916, 927
BssNI GRCGYC 2 cut(s) 162, 798
BssSI CACGAG 2 cut(s) 1036, 1074
BssT1I CCWWGG 2 cut(s) 97, 312
Bst2BI CACGAG 2 cut(s) 1036, 1074
Bst2UI CCWGG 1 cut(s) 452
Bst4CI ACNGT 3 cut(s) 235, 773, 854
Bst6I CTCTTC 4 cut(s) 137, 149, 175, 474
BstACI GRCGYC 2 cut(s) 162, 798
BstAUI TGTACA 1 cut(s) 990
BstBAI YACGTR 2 cut(s) 946, 957
BstC8I GCNNGC 1 cut(s) 465
BstDEI CTNAG 2 cut(s) 15, 1008
BstDSI CCRYGG 1 cut(s) 312
BstF5I GGATG 3 cut(s) 70, 107, 782
BstFNI CGCG 1 cut(s) 200
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 7 cut(s) 10, 39, 276, 360, 673, 919, 930
BstMAI GTCTC 1 cut(s) 1073
BstMBI GATC 7 cut(s) 7, 36, 273, 357, 670, 916, 927
BstMCI CGRYCG 3 cut(s) 39, 276, 360
BstMWI GCNNNNNNNGC 6 cut(s) 296, 305, 314, 939, 948, 1088
BstNI CCWGG 1 cut(s) 452
BstNSI RCATGY 1 cut(s) 1046
BstSCI CCNGG 4 cut(s) 450, 561, 625, 704
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 6 cut(s) 508, 643, 833, 848, 914, 1091
BstV2I GAAGAC 1 cut(s) 801
Bsu15I ATCGAT 1 cut(s) 360
BsuI GTATCC 2 cut(s) 420, 1090
BsuRI GGCC 3 cut(s) 390, 608, 649
BsuTUI ATCGAT 1 cut(s) 360
BtgI CCRYGG 1 cut(s) 312
BtrI CACGTC 2 cut(s) 256, 424
BtsCI GGATG 3 cut(s) 70, 107, 782
BtsI GCAGTG 1 cut(s) 759
BtsIMutI CAGTG 1 cut(s) 759
BveI ACCTGC 1 cut(s) 677
Cac8I GCNNGC 1 cut(s) 465
CciI TCATGA 1 cut(s) 667
CfoI GCGC 1 cut(s) 152
Cfr10I RCCGGY 1 cut(s) 637
Cfr13I GGNCC 2 cut(s) 623, 647
ClaI ATCGAT 1 cut(s) 360
CseI GACGC 2 cut(s) 297, 806
Csp6I GTAC 2 cut(s) 559, 991
CviAII CATG 6 cut(s) 179, 313, 668, 914, 1043, 1092
CviQI GTAC 2 cut(s) 559, 991
DdeI CTNAG 2 cut(s) 15, 1008
DpnI GATC 7 cut(s) 9, 38, 275, 359, 672, 918, 929
DpnII GATC 7 cut(s) 7, 36, 273, 357, 670, 916, 927
Eam1104I CTCTTC 4 cut(s) 137, 149, 175, 474
EarI CTCTTC 4 cut(s) 137, 149, 175, 474
EciI GGCGGA 1 cut(s) 729
Eco130I CCWWGG 2 cut(s) 97, 312
Eco31I GGTCTC 1 cut(s) 1073
Eco32I GATATC 2 cut(s) 364, 843
Eco47I GGWCC 1 cut(s) 623
Eco72I CACGTG 1 cut(s) 957
Eco88I CYCGRG 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 450
EcoRV GATATC 2 cut(s) 364, 843
EcoT14I CCWWGG 2 cut(s) 97, 312
ErhI CCWWGG 2 cut(s) 97, 312
FaeI CATG 6 cut(s) 182, 316, 671, 917, 1046, 1095
FatI CATG 6 cut(s) 178, 312, 667, 913, 1042, 1091
FauI CCCGC 2 cut(s) 546, 661
FbaI TGATCA 1 cut(s) 7
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 9 cut(s) 198, 468, 522, 657, 697, 822, 837, 903, 1080
FokI GGATG 3 cut(s) 77, 94, 789
Fsp4HI GCNGC 9 cut(s) 198, 468, 522, 657, 697, 822, 837, 903, 1080
FspBI CTAG 2 cut(s) 369, 398
GlaI GCGC 1 cut(s) 151
GluI GCNGC 9 cut(s) 198, 468, 522, 657, 697, 822, 837, 903, 1080
GsaI CCCAGC 1 cut(s) 686
GsuI CTGGAG 1 cut(s) 202
HaeIII GGCC 3 cut(s) 390, 608, 649
HapII CCGG 7 cut(s) 62, 334, 563, 626, 638, 705, 920
HgaI GACGC 2 cut(s) 297, 806
HhaI GCGC 1 cut(s) 152
Hin1I GRCGYC 2 cut(s) 162, 798
Hin1II CATG 6 cut(s) 182, 316, 671, 917, 1046, 1095
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HincII GTYRAC 2 cut(s) 166, 598
HindII GTYRAC 2 cut(s) 166, 598
HindIII AAGCTT 1 cut(s) 45
HinfI GANTC 5 cut(s) 122, 167, 350, 482, 787
HpaI GTTAAC 1 cut(s) 598
HpaII CCGG 7 cut(s) 62, 334, 563, 626, 638, 705, 920
HphI GGTGA 5 cut(s) 72, 131, 652, 837, 937
Hpy166II GTNNAC 5 cut(s) 166, 529, 598, 991, 1014
Hpy188I TCNGA 4 cut(s) 26, 414, 487, 981
Hpy188III TCNNGA 4 cut(s) 62, 514, 668, 791
Hpy8I GTNNAC 5 cut(s) 166, 529, 598, 991, 1014
Hpy99I CGWCG 2 cut(s) 167, 854
HpyAV CCTTC 2 cut(s) 370, 684
HpyCH4III ACNGT 3 cut(s) 235, 773, 854
HpyCH4IV ACGT 5 cut(s) 162, 255, 423, 945, 956
HpyCH4V TGCA 4 cut(s) 259, 290, 821, 1079
HpyF10VI GCNNNNNNNGC 6 cut(s) 296, 305, 314, 939, 948, 1088
HpyF3I CTNAG 2 cut(s) 15, 1008
HpySE526I ACGT 5 cut(s) 162, 255, 423, 945, 956
Hsp92I GRCGYC 2 cut(s) 162, 798
Hsp92II CATG 6 cut(s) 182, 316, 671, 917, 1046, 1095
HspAI GCGC 1 cut(s) 150
Kpn2I TCCGGA 1 cut(s) 61
Ksp22I TGATCA 1 cut(s) 7
KspAI GTTAAC 1 cut(s) 598
Kzo9I GATC 7 cut(s) 7, 36, 273, 357, 670, 916, 927
LmnI GCTCC 3 cut(s) 833, 899, 1049
Lsp1109I GCAGC 6 cut(s) 508, 643, 833, 848, 914, 1091
LweI GCATC 3 cut(s) 277, 808, 1091
MaeI CTAG 2 cut(s) 369, 398
MaeII ACGT 5 cut(s) 162, 255, 423, 945, 956
MaeIII GTNAC 5 cut(s) 184, 320, 640, 965, 1028
MalI GATC 7 cut(s) 9, 38, 275, 359, 672, 918, 929
MbiI CCGCTC 1 cut(s) 467
MboI GATC 7 cut(s) 7, 36, 273, 357, 670, 916, 927
MboII GAAGA 7 cut(s) 124, 136, 162, 385, 467, 491, 806
MluCI AATT 3 cut(s) 212, 583, 1060
MlyI GAGTC 4 cut(s) 116, 161, 491, 781
MmeI TCCRAC 1 cut(s) 1027
MnlI CCTC 6 cut(s) 121, 152, 364, 401, 705, 721
MroI TCCGGA 1 cut(s) 61
MroXI GAANNNNTTC 2 cut(s) 341, 380
MseI TTAA 3 cut(s) 92, 237, 597
MslI CAYNNNNRTG 2 cut(s) 85, 254
MspA1I CMGCKG 1 cut(s) 656
MspI CCGG 7 cut(s) 62, 334, 563, 626, 638, 705, 920
MspR9I CCNGG 4 cut(s) 452, 563, 627, 706
MvaI CCWGG 1 cut(s) 452
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 6 cut(s) 296, 305, 314, 939, 948, 1088
NciI CCSGG 3 cut(s) 563, 627, 706
NcoI CCATGG 1 cut(s) 312
NdeII GATC 7 cut(s) 7, 36, 273, 357, 670, 916, 927
NlaIII CATG 6 cut(s) 182, 316, 671, 917, 1046, 1095
NlaIV GGNNCC 3 cut(s) 103, 648, 764
NmeAIII GCCGAG 1 cut(s) 826
NmuCI GTSAC 2 cut(s) 184, 640
NspI RCATGY 1 cut(s) 1046
OliI CACNNNNGTG 2 cut(s) 85, 254
PagI TCATGA 1 cut(s) 667
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 798
PdmI GAANNNNTTC 2 cut(s) 341, 380
PfeI GAWTC 1 cut(s) 350
PflMI CCANNNNNTGG 1 cut(s) 773
PfoI TCCNGGA 1 cut(s) 450
PkrI GCNGC 9 cut(s) 199, 469, 523, 658, 698, 823, 838, 904, 1081
Ple19I CGATCG 3 cut(s) 39, 276, 360
PleI GAGTC 4 cut(s) 116, 161, 490, 781
PmaCI CACGTG 1 cut(s) 957
PmlI CACGTG 1 cut(s) 957
PpsI GAGTC 4 cut(s) 116, 161, 490, 781
Ppu21I YACGTR 2 cut(s) 946, 957
Psp6I CCWGG 1 cut(s) 450
PspCI CACGTG 1 cut(s) 957
PspFI CCCAGC 1 cut(s) 682
PspGI CCWGG 1 cut(s) 450
PspN4I GGNNCC 3 cut(s) 103, 648, 764
PspPI GGNCC 2 cut(s) 623, 647
PvuI CGATCG 3 cut(s) 39, 276, 360
RsaI GTAC 2 cut(s) 560, 992
RsaNI GTAC 2 cut(s) 559, 991
RseI CAYNNNNRTG 2 cut(s) 85, 254
SalI GTCGAC 1 cut(s) 164
SaqAI TTAA 3 cut(s) 92, 237, 597
SatI GCNGC 9 cut(s) 198, 468, 522, 657, 697, 822, 837, 903, 1080
Sau3AI GATC 7 cut(s) 7, 36, 273, 357, 670, 916, 927
Sau96I GGNCC 2 cut(s) 623, 647
SchI GAGTC 4 cut(s) 116, 161, 491, 781
ScrFI CCNGG 4 cut(s) 452, 563, 627, 706
SfaNI GCATC 3 cut(s) 277, 808, 1091
SgrAI CRCCGGYG 1 cut(s) 637
SinI GGWCC 1 cut(s) 623
SmiMI CAYNNNNRTG 2 cut(s) 85, 254
Sse9I AATT 3 cut(s) 212, 583, 1060
SspMI CTAG 2 cut(s) 369, 398
StyD4I CCNGG 4 cut(s) 450, 561, 625, 704
StyI CCWWGG 2 cut(s) 97, 312
TaaI ACNGT 3 cut(s) 235, 773, 854
TaiI ACGT 5 cut(s) 165, 258, 426, 948, 959
TaqI TCGA 9 cut(s) 35, 165, 272, 356, 360, 393, 691, 792, 891
TasI AATT 3 cut(s) 212, 583, 1060
TatI WGTACW 1 cut(s) 990
TauI GCSGC 3 cut(s) 200, 470, 699
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 3 cut(s) 92, 237, 597
Tru9I TTAA 3 cut(s) 92, 237, 597
TscAI CASTG 1 cut(s) 759
TseFI GTSAC 2 cut(s) 184, 640
TseI GCWGC 6 cut(s) 521, 656, 821, 836, 902, 1079
Tsp45I GTSAC 2 cut(s) 184, 640
TspDTI ATGAA 3 cut(s) 195, 334, 656
TspGWI ACGGA 2 cut(s) 266, 912
TspRI CASTG 1 cut(s) 759
Van91I CCANNNNNTGG 1 cut(s) 773
VpaK11BI GGWCC 1 cut(s) 623
XceI RCATGY 1 cut(s) 1046
XcmI CCANNNNNNNNNTGG 1 cut(s) 774
XmiI GTMKAC 1 cut(s) 165
XmnI GAANNNNTTC 2 cut(s) 341, 380
XspI CTAG 2 cut(s) 369, 398
ZraI GACGTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.