pycom02g01000

Glyco_18

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
584802 .. 586238
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g01000.2

Sequence Viewer

Length: 1107 bp
ATGTCTTCCAAGCTAGCACTTCCGTTTATCTTTTCCGCTCTCATCTTCCTCATCCACCTCAACTTCTCATCCGGCCAAACCGTCGTTAAAGCCGCTTACTGGTTTCCCGACAGTGGCTTCCCGGCCGCCAGCATAAACTCCAGCCTTTTCACTCATCTCTTTTGTGCATTTGCCGATCTCAATCCCACCACCTACCAAGTCACAGTTTCGTCCTCCAACTCCGCCCCGTTCTCAAGCTTTACACAAACAGTCCGGCAAAAAAACCCTTCTGTAAAAACCCTGCTGTCCATCGGTGGCGGAAATTCCAACCCCGCCACCTTTGCCGCAATGGCTAGCCAGGCTACCCGGCGTAAAGCGTTCATTAACTCCTCCATCACGTTAGCGCGGAGTTACAACTTCCATGGCCTTGACCTTGACTGGGAATACCCATCCTCCACCACGGAGATGACTAACTTCGGTACCCTTCTCACGGAGTGGCGAACTGCCGTGGCAAATGAGTCAAAAACCACGGGCAAGACCGCTTTACTTCTAGCCGCGGCTGTTTTCCGCTCTGCGGATTACTACACCATAAACTACCCCTTCCAGTCCATATCAAACAGTTTGGACTGGATCAACGTAATGGCTTACGACTTCTACGGCCCCGGTTGGTTCCCAAACAACACTGCACCACCCGCGGCGTTGTCTGCGACTTCCGTTAACGGGGATGCCGGAATCACGTCGTGGATTCAGGCAGGTTTGGCTCCCAAAAAGATAGTGCTAGGTCTTCCATTTTACGGATATGCGTGGCGTTTGTTGAACGCGAATAACCACGGCATTTTTGCCCCAGCTAATGGATCTGGTATAGGAACGTATGGTGACCAAGGTTACAGCCAAATAAAGGATTTCATAAGCCAAAACGCAGCTCAGACGGTGTACAACGCCACCGTTGTAACGAACTATTGCTACTCCGGGAAGACGTGGATTGGTTACGACGATACGCAGAGTATCTCCGCCAAGGTTTCTTATGCTAAGACGACGAAAGGACTTCTTGGCTACTTTGCATGGCATGTCGGCGCTGACAGCAGTAATTGGGCTCTTTCTCAAGCAGCTGCAAGTACATGGGGATGA

Protein Analysis

369

Amino Acids

39.74

Weight (kDa)

8.85

Isoelectric Point (pI)

30.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 722
Acc65I GGTACC 1 cut(s) 458
AccB1I GGYRCC 1 cut(s) 458
AccB7I CCANNNNNTGG 1 cut(s) 830
AccBSI CCGCTC 2 cut(s) 38, 549
AccII CGCG 4 cut(s) 385, 536, 674, 800
AclWI GGATC 2 cut(s) 617, 841
AcoI YGGCCR 2 cut(s) 73, 123
AcsI RAATTY 1 cut(s) 301
AdeI CACNNNGTG 2 cut(s) 474, 720
AfaI GTAC 3 cut(s) 460, 914, 1096
AfiI CCNNNNNNNGG 9 cut(s) 99, 113, 418, 469, 553, 699, 773, 830, 877
AgsI TTSAA 1 cut(s) 796
AjiI CACGTC 2 cut(s) 717, 957
AjnI CCWGG 1 cut(s) 336
AluBI AGCT 5 cut(s) 13, 237, 827, 902, 1088
AluI AGCT 5 cut(s) 13, 237, 827, 902, 1088
AlwI GGATC 2 cut(s) 617, 841
AoxI GGCC 4 cut(s) 73, 123, 403, 637
ApeKI GCWGC 3 cut(s) 899, 1085, 1088
ApoI RAATTY 1 cut(s) 301
Asp718I GGTACC 1 cut(s) 458
AspLEI GCGC 2 cut(s) 385, 1055
AspS9I GGNCC 1 cut(s) 638
AsuC2I CCSGG 4 cut(s) 122, 346, 642, 949
AsuHPI GGTGA 1 cut(s) 866
AsuNHI GCTAGC 2 cut(s) 13, 332
BaeI ACNNNNGTAYC 2 cut(s) 442, 475
BanI GGYRCC 1 cut(s) 458
BanII GRGCYC 1 cut(s) 1075
BbsI GAAGAC 2 cut(s) 755, 959
BbvI GCAGC 3 cut(s) 911, 1075, 1097
BccI CCATC 3 cut(s) 296, 380, 436
BceAI ACGGC 3 cut(s) 470, 652, 826
BciT130I CCWGG 1 cut(s) 338
BcnI CCSGG 4 cut(s) 122, 346, 642, 949
BfaI CTAG 4 cut(s) 14, 333, 530, 758
BfoI RGCGCY 1 cut(s) 1056
BfuAI ACCTGC 1 cut(s) 722
BglI GCCNNNNNGGC 1 cut(s) 329
BisI GCNGC 9 cut(s) 93, 126, 324, 534, 537, 675, 900, 1086, 1089
BlsI GCNGC 9 cut(s) 94, 127, 325, 535, 538, 676, 901, 1087, 1090
Bme1390I CCNGG 5 cut(s) 122, 338, 346, 642, 949
BmgBI CACGTC 2 cut(s) 717, 957
BmgT120I GGNCC 1 cut(s) 638
BmiI GGNNCC 4 cut(s) 460, 640, 650, 741
BmrFI CCNGG 5 cut(s) 122, 338, 346, 642, 949
BmrI ACTGGG 1 cut(s) 427
BmsI GCATC 1 cut(s) 694
BmtI GCTAGC 2 cut(s) 17, 336
BmuI ACTGGG 1 cut(s) 427
BpiI GAAGAC 2 cut(s) 755, 959
BpmI CTGGAG 1 cut(s) 124
BpuEI CTTGAG 2 cut(s) 217, 1065
BpuMI CCSGG 4 cut(s) 122, 346, 642, 949
BsaBI GATNNNNATC 1 cut(s) 180
BsaXI ACNNNNNCTCC 2 cut(s) 416, 446
Bsc4I CCNNNNNNNGG 9 cut(s) 99, 113, 418, 469, 553, 699, 773, 830, 877
Bse1I ACTGG 4 cut(s) 104, 422, 583, 611
Bse3DI GCAATG 1 cut(s) 333
Bse8I GATNNNNATC 1 cut(s) 180
BseBI CCWGG 1 cut(s) 338
BseGI GGATG 4 cut(s) 51, 68, 428, 709
BseJI GATNNNNATC 1 cut(s) 180
BseLI CCNNNNNNNGG 9 cut(s) 99, 113, 418, 469, 553, 699, 773, 830, 877
BseMI GCAATG 1 cut(s) 333
BseMII CTCAG 1 cut(s) 917
BseNI ACTGG 4 cut(s) 104, 422, 583, 611
BseRI GAGGAG 1 cut(s) 358
BseX3I CGGCCG 1 cut(s) 123
BseXI GCAGC 3 cut(s) 911, 1075, 1097
BseYI CCCAGC 1 cut(s) 823
BsgI GTGCAG 1 cut(s) 648
Bsh1236I CGCG 4 cut(s) 385, 536, 674, 800
Bsh1285I CGRYCG 1 cut(s) 126
BshFI GGCC 4 cut(s) 75, 125, 405, 639
BshNI GGYRCC 1 cut(s) 458
BsiEI CGRYCG 1 cut(s) 126
BsiSI CCGG 7 cut(s) 72, 122, 253, 346, 642, 708, 948
BslI CCNNNNNNNGG 9 cut(s) 99, 113, 418, 469, 553, 699, 773, 830, 877
BsnI GGCC 4 cut(s) 75, 125, 405, 639
Bsp1286I GDGCHC 1 cut(s) 1075
Bsp1407I TGTACA 1 cut(s) 912
Bsp143I GATC 3 cut(s) 175, 609, 833
Bsp19I CCATGG 1 cut(s) 400
BspANI GGCC 4 cut(s) 75, 125, 405, 639
BspCNI CTCAG 1 cut(s) 916
BspFNI CGCG 4 cut(s) 385, 536, 674, 800
BspLI GGNNCC 4 cut(s) 460, 640, 650, 741
BspMI ACCTGC 1 cut(s) 722
BspOI GCTAGC 2 cut(s) 17, 336
BspPI GGATC 2 cut(s) 617, 841
BspT107I GGYRCC 1 cut(s) 458
BsrBI CCGCTC 2 cut(s) 38, 549
BsrDI GCAATG 1 cut(s) 333
BsrGI TGTACA 1 cut(s) 912
BsrI ACTGG 4 cut(s) 104, 422, 583, 611
BssMI GATC 3 cut(s) 175, 609, 833
BssT1I CCWWGG 3 cut(s) 400, 859, 993
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 7 cut(s) 82, 113, 205, 250, 599, 910, 925
BstAUI TGTACA 1 cut(s) 912
BstC8I GCNNGC 3 cut(s) 15, 130, 334
BstDEI CTNAG 2 cut(s) 903, 1008
BstDSI CCRYGG 7 cut(s) 400, 438, 486, 507, 534, 672, 808
BstEII GGTNACC 1 cut(s) 854
BstF5I GGATG 4 cut(s) 51, 68, 428, 709
BstFNI CGCG 4 cut(s) 385, 536, 674, 800
BstH2I RGCGCY 1 cut(s) 1056
BstHHI GCGC 2 cut(s) 385, 1055
BstKTI GATC 3 cut(s) 178, 612, 836
BstMBI GATC 3 cut(s) 175, 609, 833
BstMCI CGRYCG 1 cut(s) 126
BstMWI GCNNNNNNNGC 7 cut(s) 320, 329, 338, 671, 683, 737, 1059
BstNI CCWGG 1 cut(s) 338
BstNSI RCATGY 1 cut(s) 1049
BstPI GGTNACC 1 cut(s) 854
BstSCI CCNGG 5 cut(s) 120, 336, 344, 640, 947
BstUI CGCG 4 cut(s) 385, 536, 674, 800
BstV1I GCAGC 3 cut(s) 911, 1075, 1097
BstV2I GAAGAC 2 cut(s) 755, 959
BstX2I RGATCY 1 cut(s) 833
BstYI RGATCY 1 cut(s) 833
BstZI CGGCCG 1 cut(s) 123
BsuRI GGCC 4 cut(s) 75, 125, 405, 639
BtgI CCRYGG 7 cut(s) 400, 438, 486, 507, 534, 672, 808
BtrI CACGTC 2 cut(s) 717, 957
BtsCI GGATG 4 cut(s) 51, 68, 428, 709
BtsI GCAGTG 1 cut(s) 660
BtsIMutI CAGTG 2 cut(s) 118, 660
BveI ACCTGC 1 cut(s) 722
Cac8I GCNNGC 3 cut(s) 15, 130, 334
CfoI GCGC 2 cut(s) 385, 1055
Cfr13I GGNCC 1 cut(s) 638
Cfr42I CCGCGG 2 cut(s) 537, 675
Csp6I GTAC 3 cut(s) 459, 913, 1095
CviAII CATG 4 cut(s) 401, 1041, 1046, 1098
CviQI GTAC 3 cut(s) 459, 913, 1095
DdeI CTNAG 2 cut(s) 903, 1008
DpnI GATC 3 cut(s) 177, 611, 835
DpnII GATC 3 cut(s) 175, 609, 833
DraIII CACNNNGTG 2 cut(s) 474, 720
EaeI YGGCCR 2 cut(s) 73, 123
EagI CGGCCG 1 cut(s) 123
EciI GGCGGA 3 cut(s) 211, 312, 979
EclXI CGGCCG 1 cut(s) 123
Eco130I CCWWGG 3 cut(s) 400, 859, 993
Eco24I GRGCYC 1 cut(s) 1075
Eco52I CGGCCG 1 cut(s) 123
Eco91I GGTNACC 1 cut(s) 854
EcoO65I GGTNACC 1 cut(s) 854
EcoRII CCWGG 1 cut(s) 336
EcoT14I CCWWGG 3 cut(s) 400, 859, 993
EcoT38I GRGCYC 1 cut(s) 1075
ErhI CCWWGG 3 cut(s) 400, 859, 993
FaeI CATG 4 cut(s) 404, 1044, 1049, 1101
FalI AAGNNNNNCTT 2 cut(s) 1011, 1043
FatI CATG 4 cut(s) 400, 1040, 1045, 1097
FauI CCCGC 2 cut(s) 319, 679
Fnu4HI GCNGC 9 cut(s) 93, 126, 324, 534, 537, 675, 900, 1086, 1089
FokI GGATG 4 cut(s) 38, 55, 415, 716
FriOI GRGCYC 1 cut(s) 1075
Fsp4HI GCNGC 9 cut(s) 93, 126, 324, 534, 537, 675, 900, 1086, 1089
FspBI CTAG 4 cut(s) 14, 333, 530, 758
GlaI GCGC 2 cut(s) 384, 1054
GluI GCNGC 9 cut(s) 93, 126, 324, 534, 537, 675, 900, 1086, 1089
GsaI CCCAGC 1 cut(s) 827
GsuI CTGGAG 1 cut(s) 124
HaeII RGCGCY 1 cut(s) 1056
HaeIII GGCC 4 cut(s) 75, 125, 405, 639
HapII CCGG 7 cut(s) 72, 122, 253, 346, 642, 708, 948
HhaI GCGC 2 cut(s) 385, 1055
Hin1II CATG 4 cut(s) 404, 1044, 1049, 1101
Hin6I GCGC 2 cut(s) 383, 1053
HinP1I GCGC 2 cut(s) 383, 1053
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HindIII AAGCTT 1 cut(s) 235
HinfI GANTC 3 cut(s) 497, 711, 724
HpaI GTTAAC 1 cut(s) 697
HpaII CCGG 7 cut(s) 72, 122, 253, 346, 642, 708, 948
HphI GGTGA 1 cut(s) 866
Hpy166II GTNNAC 2 cut(s) 697, 913
Hpy188I TCNGA 1 cut(s) 906
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 2 cut(s) 697, 913
Hpy99I CGWCG 4 cut(s) 86, 721, 974, 1018
HpyAV CCTTC 3 cut(s) 276, 473, 589
HpyCH4III ACNGT 7 cut(s) 82, 113, 205, 250, 599, 910, 925
HpyCH4IV ACGT 5 cut(s) 377, 615, 716, 848, 956
HpyCH4V TGCA 4 cut(s) 167, 665, 1040, 1091
HpyF10VI GCNNNNNNNGC 7 cut(s) 320, 329, 338, 671, 683, 737, 1059
HpyF3I CTNAG 2 cut(s) 903, 1008
HpySE526I ACGT 5 cut(s) 377, 615, 716, 848, 956
Hsp92II CATG 4 cut(s) 404, 1044, 1049, 1101
HspAI GCGC 2 cut(s) 383, 1053
KpnI GGTACC 1 cut(s) 462
KspAI GTTAAC 1 cut(s) 697
KspI CCGCGG 2 cut(s) 537, 675
Kzo9I GATC 3 cut(s) 175, 609, 833
LmnI GCTCC 1 cut(s) 745
Lsp1109I GCAGC 3 cut(s) 911, 1075, 1097
LweI GCATC 1 cut(s) 694
MaeI CTAG 4 cut(s) 14, 333, 530, 758
MaeII ACGT 5 cut(s) 377, 615, 716, 848, 956
MaeIII GTNAC 6 cut(s) 199, 389, 854, 863, 928, 965
MalI GATC 3 cut(s) 177, 611, 835
MbiI CCGCTC 2 cut(s) 38, 549
MboI GATC 3 cut(s) 175, 609, 833
MboII GAAGA 3 cut(s) 37, 755, 964
MflI RGATCY 1 cut(s) 833
MhlI GDGCHC 1 cut(s) 1075
MluCI AATT 2 cut(s) 301, 1066
MlyI GAGTC 1 cut(s) 506
MmeI TCCRAC 2 cut(s) 240, 330
MnlI CCTC 5 cut(s) 59, 68, 223, 379, 442
MseI TTAA 3 cut(s) 87, 363, 696
MslI CAYNNNNRTG 2 cut(s) 443, 1102
MspA1I CMGCKG 3 cut(s) 536, 674, 1088
MspI CCGG 7 cut(s) 72, 122, 253, 346, 642, 708, 948
MspR9I CCNGG 5 cut(s) 122, 338, 346, 642, 949
MvaI CCWGG 1 cut(s) 338
MvnI CGCG 4 cut(s) 385, 536, 674, 800
MwoI GCNNNNNNNGC 7 cut(s) 320, 329, 338, 671, 683, 737, 1059
NciI CCSGG 4 cut(s) 122, 346, 642, 949
NcoI CCATGG 1 cut(s) 400
NdeII GATC 3 cut(s) 175, 609, 833
NheI GCTAGC 2 cut(s) 13, 332
NlaIII CATG 4 cut(s) 404, 1044, 1049, 1101
NlaIV GGNNCC 4 cut(s) 460, 640, 650, 741
NmuCI GTSAC 2 cut(s) 199, 854
NspI RCATGY 1 cut(s) 1049
PfeI GAWTC 2 cut(s) 711, 724
PflMI CCANNNNNTGG 1 cut(s) 830
PfoI TCCNGGA 1 cut(s) 947
PkrI GCNGC 9 cut(s) 94, 127, 325, 535, 538, 676, 901, 1087, 1090
PleI GAGTC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 505
Psp6I CCWGG 1 cut(s) 336
PspEI GGTNACC 1 cut(s) 854
PspFI CCCAGC 1 cut(s) 823
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 4 cut(s) 460, 640, 650, 741
PspPI GGNCC 1 cut(s) 638
PsrI GAACNNNNNNTAC 2 cut(s) 926, 958
PsuI RGATCY 1 cut(s) 833
PvuII CAGCTG 1 cut(s) 1088
RsaI GTAC 3 cut(s) 460, 914, 1096
RsaNI GTAC 3 cut(s) 459, 913, 1095
RseI CAYNNNNRTG 2 cut(s) 443, 1102
SacII CCGCGG 2 cut(s) 537, 675
SaqAI TTAA 3 cut(s) 87, 363, 696
SatI GCNGC 9 cut(s) 93, 126, 324, 534, 537, 675, 900, 1086, 1089
Sau3AI GATC 3 cut(s) 175, 609, 833
Sau96I GGNCC 1 cut(s) 638
SchI GAGTC 1 cut(s) 506
ScrFI CCNGG 5 cut(s) 122, 338, 346, 642, 949
SduI GDGCHC 1 cut(s) 1075
SfaNI GCATC 1 cut(s) 694
Sfr303I CCGCGG 2 cut(s) 537, 675
SgrBI CCGCGG 2 cut(s) 537, 675
SmiMI CAYNNNNRTG 2 cut(s) 443, 1102
SmlI CTYRAG 2 cut(s) 232, 1080
SmoI CTYRAG 2 cut(s) 232, 1080
Sse9I AATT 2 cut(s) 301, 1066
SspMI CTAG 4 cut(s) 14, 333, 530, 758
StyD4I CCNGG 5 cut(s) 120, 336, 344, 640, 947
StyI CCWWGG 3 cut(s) 400, 859, 993
TaaI ACNGT 7 cut(s) 82, 113, 205, 250, 599, 910, 925
TaiI ACGT 5 cut(s) 380, 618, 719, 851, 959
TasI AATT 2 cut(s) 301, 1066
TatI WGTACW 2 cut(s) 912, 1094
TauI GCSGC 6 cut(s) 95, 128, 326, 536, 539, 677
TfiI GAWTC 2 cut(s) 711, 724
Tru1I TTAA 3 cut(s) 87, 363, 696
Tru9I TTAA 3 cut(s) 87, 363, 696
TscAI CASTG 2 cut(s) 118, 667
TseFI GTSAC 2 cut(s) 199, 854
TseI GCWGC 3 cut(s) 899, 1085, 1088
Tsp45I GTSAC 2 cut(s) 199, 854
TspDTI ATGAA 2 cut(s) 349, 874
TspGWI ACGGA 5 cut(s) 12, 455, 485, 682, 789
TspRI CASTG 2 cut(s) 118, 667
Van91I CCANNNNNTGG 1 cut(s) 830
XapI RAATTY 1 cut(s) 301
XceI RCATGY 1 cut(s) 1049
XspI CTAG 4 cut(s) 14, 333, 530, 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.