Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8454935.1

Orthogroup ID

OG0004690

Physical Location & Seq

Genomic Coordinates Reverse (-)

835 .. 1284

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8454935.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atggcggtccaaggtggccagcgagtccagcacctcgtgcaagatcgccttgctgctgaccgctgcagtcttccgcatctcatcaacggagatgccggaatcgtgtcatggatcaacgacgccggaatctcaaccaagaagatagctattggtcttccgttttacgggttcgcttggaaatggttaaaccctaacaaccatggatttttcgctcaggctgatcgctcgggtatcggggctgaagaccagcgctacaaccggaataggaggcgtatcatacacgctggtcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0006810 GO:0006887 GO:0006955 GO:0007586 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0008843 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0012505 GO:0016192 GO:0016787 GO:0016798 GO:0017144 GO:0030141 GO:0031410 GO:0031974 GO:0031982 GO:0031983 GO:0032501 GO:0032940 GO:0034774 GO:0035580 GO:0036230 GO:0042119 GO:0042581 GO:0042737 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0044237 GO:0044245 GO:0044248 GO:0044421 GO:0044422 GO:0044424 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046348 GO:0046903 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060205 GO:0070013 GO:0070820 GO:0071704 GO:0097367 GO:0097708 GO:0099503 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1904724

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

97

Amino Acids

10.82

Weight (kDa)

10.15

Isoelectric Point (pI)

31.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19720 AT4G19740 AT4G19750 AT4G19760 AT4G19770 AT4G19800 AT4G19810 AT4G19810 AT4G19820
fragaria_vesca	FvH4_1g01321 FvH4_1g01362 FvH4_1g01382
malus_domestica	MD02G1011100.v1.1 MD15G1156100.v1.1
prunus_persica	Prupe.4G180800_v2.0.a1 Prupe.7G258500_v2.0.a1 Prupe.7G259000_v2.0.a1
pyrus_communis	pycom02g01000
rosa_chinensis	RchiOBHm_Chr2g0086161
rosa_laevigata	RLG00000027969 RLG00000033389
rosa_multiflora	Rmu_co8454935.1_g000002 Rmu_sc0004510.1_g000010 Rmu_sc0004948.1_g000003 Rmu_sc0004948.1_g000021
rosa_roxburghii	Rroxscaffold_152G00434840
rosa_rugosa	Rorug01G0466300
rosa_samantha	Rh2AG016100 Rh2CG017000 Rh2DG018100
rosa_wichuraiana	Rw2G001390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 61, 74
AclWI	GGATC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	16
AcuI	CTGAAG	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	120
AdeI	CACNNNGTG	1 cut(s)	37
AfeI	AGCGCT	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	164
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
AlwI	GGATC	1 cut(s)	119
Ama87I	CYCGRG	1 cut(s)	226
Aor51HI	AGCGCT	1 cut(s)	251
AoxI	GGCC	1 cut(s)	16
ApeKI	GCWGC	2 cut(s)	53, 63
AspLEI	GCGC	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	7
AvaI	CYCGRG	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	7
BalI	TGGCCA	1 cut(s)	18
BauI	CACGAG	1 cut(s)	35
BbsI	GAAGAC	3 cut(s)	62, 146, 249
BbvI	GCAGC	2 cut(s)	40, 50
BfmI	CTRYAG	1 cut(s)	64
BfoI	RGCGCY	1 cut(s)	253
BisI	GCNGC	2 cut(s)	54, 64
BlsI	GCNGC	2 cut(s)	55, 65
Bme18I	GGWCC	1 cut(s)	7
BmeT110I	CYCGRG	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	7
BmsI	GCATC	2 cut(s)	82, 85
BpiI	GAAGAC	3 cut(s)	62, 146, 249
Bpu10I	CCTNAGC	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	10, 199
BsaWI	WCCGGW	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
BseDI	CCNNGG	2 cut(s)	10, 199
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	40, 50
BshFI	GGCC	1 cut(s)	18
BsiHKCI	CYCGRG	1 cut(s)	226
BsiSI	CCGG	3 cut(s)	96, 123, 259
BslI	CCNNNNNNNGG	1 cut(s)	164
BsnI	GGCC	1 cut(s)	18
BsoBI	CYCGRG	1 cut(s)	226
Bsp143I	GATC	3 cut(s)	43, 111, 220
Bsp19I	CCATGG	1 cut(s)	199
BspACI	CCGC	3 cut(s)	5, 61, 74
BspANI	GGCC	1 cut(s)	18
BspCNI	CTCAG	1 cut(s)	226
BspMAI	CTGCAG	1 cut(s)	68
BspPI	GGATC	1 cut(s)	119
BssECI	CCNNGG	2 cut(s)	10, 199
BssMI	GATC	3 cut(s)	43, 111, 220
BssNI	GRCGYC	1 cut(s)	120
BssSI	CACGAG	1 cut(s)	35
BssT1I	CCWWGG	2 cut(s)	10, 199
Bst2BI	CACGAG	1 cut(s)	35
BstACI	GRCGYC	1 cut(s)	120
BstAPI	GCANNNNNTGC	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	1 cut(s)	213
BstDSI	CCRYGG	1 cut(s)	199
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	3 cut(s)	46, 114, 223
BstMBI	GATC	3 cut(s)	43, 111, 220
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 37
BstSFI	CTRYAG	1 cut(s)	64
BstV1I	GCAGC	2 cut(s)	40, 50
BstV2I	GAAGAC	3 cut(s)	62, 146, 249
BsuRI	GGCC	1 cut(s)	18
BtgI	CCRYGG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	20
CfoI	GCGC	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	7
CseI	GACGC	1 cut(s)	128
CviAII	CATG	2 cut(s)	108, 200
CviJI	RGCY	4 cut(s)	18, 146, 218, 239
CviKI_1	RGCY	4 cut(s)	18, 146, 218, 239
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	3 cut(s)	45, 113, 222
DpnII	GATC	3 cut(s)	43, 111, 220
DraIII	CACNNNGTG	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	16
Eco130I	CCWWGG	2 cut(s)	10, 199
Eco47I	GGWCC	1 cut(s)	7
Eco47III	AGCGCT	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	226
EcoT14I	CCWWGG	2 cut(s)	10, 199
ErhI	CCWWGG	2 cut(s)	10, 199
FaeI	CATG	2 cut(s)	111, 203
FaiI	YATR	3 cut(s)	109, 201, 278
FalI	AAGNNNNNCTT	2 cut(s)	33, 65
FatI	CATG	2 cut(s)	107, 199
Fnu4HI	GCNGC	2 cut(s)	54, 64
Fsp4HI	GCNGC	2 cut(s)	54, 64
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	2 cut(s)	54, 64
HaeII	RGCGCY	1 cut(s)	253
HaeIII	GGCC	1 cut(s)	18
HapII	CCGG	3 cut(s)	96, 123, 259
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	252
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	2 cut(s)	111, 203
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HinfI	GANTC	3 cut(s)	24, 99, 126
HpaII	CCGG	3 cut(s)	96, 123, 259
Hpy99I	CGWCG	1 cut(s)	122
HpyCH4V	TGCA	2 cut(s)	40, 66
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 37
HpyF3I	CTNAG	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	111, 203
HspAI	GCGC	1 cut(s)	250
Kzo9I	GATC	3 cut(s)	43, 111, 220
LpnPI	CCDG	8 cut(s)	32, 41, 109, 136, 200, 260, 270, 272
Lsp1109I	GCAGC	2 cut(s)	40, 50
LweI	GCATC	2 cut(s)	82, 85
MalI	GATC	3 cut(s)	45, 113, 222
MboI	GATC	3 cut(s)	43, 111, 220
MboII	GAAGA	4 cut(s)	62, 146, 151, 254
MlsI	TGGCCA	1 cut(s)	18
MluNI	TGGCCA	1 cut(s)	18
MlyI	GAGTC	1 cut(s)	33
MnlI	CCTC	2 cut(s)	44, 261
Mox20I	TGGCCA	1 cut(s)	18
MscI	TGGCCA	1 cut(s)	18
MseI	TTAA	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	18
MspA1I	CMGCKG	1 cut(s)	63
MspI	CCGG	3 cut(s)	96, 123, 259
MwoI	GCNNNNNNNGC	2 cut(s)	28, 37
NcoI	CCATGG	1 cut(s)	199
NdeII	GATC	3 cut(s)	43, 111, 220
NlaIII	CATG	2 cut(s)	111, 203
PfeI	GAWTC	2 cut(s)	99, 126
PkrI	GCNGC	2 cut(s)	55, 65
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	7
PstI	CTGCAG	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	2 cut(s)	54, 64
Sau3AI	GATC	3 cut(s)	43, 111, 220
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	1 cut(s)	33
SetI	ASST	3 cut(s)	16, 36, 148
SfaNI	GCATC	2 cut(s)	82, 85
SfcI	CTRYAG	1 cut(s)	64
SinI	GGWCC	1 cut(s)	7
SsiI	CCGC	3 cut(s)	5, 61, 74
StyI	CCWWGG	2 cut(s)	10, 199
TfiI	GAWTC	2 cut(s)	99, 126
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TseI	GCWGC	2 cut(s)	53, 63
TspGWI	ACGGA	2 cut(s)	102, 147
VpaK11BI	GGWCC	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.