RchiOBHm_Chr2g0086161

Glyco_18

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
1311710 .. 1313092
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46169

Sequence Viewer

Length: 1128 bp
ATGTCTTCCAAAACTAAAAATCTTCCATTTCTCTTCTCCGCCATCCTCTTCCTTATCCGCCTCAATGTCTCCGCCGCCCAAATCACCGTAGTTAAAGCCGCCTACTGGTTTCCGGACAGCGGCCAAGCAGTCTCCTCCATAAACTCCACCCTCTTCACCCATCTCTTCTGCGCATTCGCCGATCTCAACCCCACAACTTATCAAGTAACCATTTCCTCCGCAAACTCACCCCAATTCTCCACCTTCACGCAAACAGTCCGACAGAAAAACCCTAATGTCAAAAGCCTCCTCTCCATCGGCGGAGGAAACTCCAGCCCCTCCACCTTCGCCGCCATGGCCAGCCAGGCCACTCGGCGCAAAGCATTCATAGACACATCCATCAAATTAGCGAGGAACTACTCCTTCTACGGCCTTGACCTAGATTGGGAGTACCCTTCCTCCGCCACGGAGATGACCAACTTCGGCAGCCTCCTCACTGAATGGCGGTCCGCGGTGGCCAATGAGTCAAGCACCTCCGGCAAGACGGCGTTGCTGTTGACAGCTGCAGTCTTCCGCAATGCAGATTACTACAGCATAAACTATCCATTCCAGGCTGTTTCGAGCAGCCTAGACTGGATCAACGTCATGACGTATGACTATTACGGCCCGAGTTTCGCCGAAGGTAAAACCAACACTTACCCGCCAGCTGCATTGTACAACGGTGGATCCTCCAGTCTCATCAATGGAGACGCCGGAATCGTGTCGTGGATCAACAACGCCGGAATCTCAACCAAGAAGATAGTTATTGGTCTTCCGTTTTACGGGTACGCTTGGAAATTGTTAAACCCTAACAACCATGGATTTTTCGCTCAAGCTAATGGCTCGGCTATCGGTGCTTATGGAGACCAGGGCTACAACCAGATTACAGTTTTGATCAGCCGCGGGTTTCAGACGGTGTACAATGCCACGGTAGTTAGTAACTATTGCTACAATGGGACAACTTGGATCGGTTACGATGATACGCAGAGTATTAGCGCCAAGGTTTCGTACGCTAAAGGAAAGGCTCTTCTTGGTTACTTTGCTTGGCATACTGGTGCTGACACAACTACTTGGACTCTTTCTCAAACAGCTTTCAGTACATGGGGATGA

Protein Analysis

375

Amino Acids

40.79

Weight (kDa)

8.94

Isoelectric Point (pI)

26.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 34 - 360 1.5e-71 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 172
AccII CGCG 2 cut(s) 491, 921
AccIII TCCGGA 1 cut(s) 112
AclWI GGATC 5 cut(s) 623, 699, 712, 755, 992
AcoI YGGCCR 3 cut(s) 121, 336, 495
AcyI GRCGYC 1 cut(s) 729
AfaI GTAC 6 cut(s) 431, 695, 806, 938, 1028, 1117
AfiI CCNNNNNNNGG 4 cut(s) 105, 119, 424, 800
AjnI CCWGG 3 cut(s) 342, 588, 885
AluBI AGCT 4 cut(s) 542, 686, 854, 1109
AluI AGCT 4 cut(s) 542, 686, 854, 1109
Alw26I GTCTC 5 cut(s) 73, 136, 719, 720, 876
AlwI GGATC 5 cut(s) 623, 699, 712, 755, 992
Ama87I CYCGRG 1 cut(s) 646
Aor13HI TCCGGA 1 cut(s) 112
AoxI GGCC 6 cut(s) 121, 336, 345, 409, 495, 643
ApeKI GCWGC 4 cut(s) 465, 542, 603, 686
AspLEI GCGC 3 cut(s) 173, 357, 1016
AspS9I GGNCC 2 cut(s) 486, 644
AsuHPI GGTGA 3 cut(s) 76, 148, 219
AvaI CYCGRG 1 cut(s) 646
AvaII GGWCC 1 cut(s) 486
BalI TGGCCA 2 cut(s) 338, 497
BamHI GGATCC 1 cut(s) 704
BbsI GAAGAC 2 cut(s) 541, 782
BbvI GCAGC 4 cut(s) 477, 529, 615, 673
BccI CCATC 4 cut(s) 50, 168, 302, 386
BceAI ACGGC 3 cut(s) 424, 540, 658
BciT130I CCWGG 3 cut(s) 344, 590, 887
BclI TGATCA 1 cut(s) 912
BcoDI GTCTC 5 cut(s) 73, 136, 719, 720, 876
BfaI CTAG 2 cut(s) 419, 608
BfmI CTRYAG 2 cut(s) 543, 568
BfoI RGCGCY 1 cut(s) 1017
BglI GCCNNNNNGGC 2 cut(s) 335, 344
BisI GCNGC 9 cut(s) 75, 99, 121, 330, 466, 543, 604, 687, 919
BlsI GCNGC 9 cut(s) 76, 100, 122, 331, 467, 544, 605, 688, 920
Bme1390I CCNGG 3 cut(s) 344, 590, 887
Bme18I GGWCC 1 cut(s) 486
BmeT110I CYCGRG 1 cut(s) 646
BmgT120I GGNCC 2 cut(s) 486, 644
BmiI GGNNCC 1 cut(s) 706
BmrFI CCNGG 3 cut(s) 344, 590, 887
BpiI GAAGAC 2 cut(s) 541, 782
BpmI CTGGAG 2 cut(s) 295, 694
BpuEI CTTGAG 1 cut(s) 834
BsaHI GRCGYC 1 cut(s) 729
BsaI GGTCTC 1 cut(s) 876
BsaJI CCNNGG 8 cut(s) 333, 444, 489, 835, 886, 919, 945, 1017
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 422, 452
Bsc4I CCNNNNNNNGG 4 cut(s) 105, 119, 424, 800
Bse1I ACTGG 4 cut(s) 110, 617, 711, 1075
Bse3DI GCAATG 1 cut(s) 562
BseAI TCCGGA 1 cut(s) 112
BseBI CCWGG 3 cut(s) 344, 590, 887
BseDI CCNNGG 8 cut(s) 333, 444, 489, 835, 886, 919, 945, 1017
BseGI GGATG 2 cut(s) 42, 374
BseLI CCNNNNNNNGG 4 cut(s) 105, 119, 424, 800
BseMI GCAATG 1 cut(s) 562
BseNI ACTGG 4 cut(s) 110, 617, 711, 1075
BseRI GAGGAG 3 cut(s) 124, 278, 461
BseXI GCAGC 4 cut(s) 477, 529, 615, 673
Bsh1236I CGCG 2 cut(s) 491, 921
BshFI GGCC 6 cut(s) 123, 338, 347, 411, 497, 645
BsiHKCI CYCGRG 1 cut(s) 646
BsiSI CCGG 4 cut(s) 113, 516, 732, 759
BsiWI CGTACG 1 cut(s) 1026
BslFI GGGAC 1 cut(s) 988
BslI CCNNNNNNNGG 4 cut(s) 105, 119, 424, 800
BsmAI GTCTC 5 cut(s) 73, 136, 719, 720, 876
BsmBI CGTCTC 1 cut(s) 720
BsmFI GGGAC 1 cut(s) 988
BsmI GAATGC 2 cut(s) 173, 362
BsnI GGCC 6 cut(s) 123, 338, 347, 411, 497, 645
Bso31I GGTCTC 1 cut(s) 876
BsoBI CYCGRG 1 cut(s) 646
Bsp13I TCCGGA 1 cut(s) 112
Bsp1407I TGTACA 2 cut(s) 693, 936
Bsp143I GATC 6 cut(s) 181, 615, 704, 747, 912, 984
Bsp19I CCATGG 2 cut(s) 333, 835
BspANI GGCC 6 cut(s) 123, 338, 347, 411, 497, 645
BspEI TCCGGA 1 cut(s) 112
BspFNI CGCG 2 cut(s) 491, 921
BspHI TCATGA 1 cut(s) 624
BspLI GGNNCC 1 cut(s) 706
BspMAI CTGCAG 1 cut(s) 547
BspPI GGATC 5 cut(s) 623, 699, 712, 755, 992
BspQI GCTCTTC 1 cut(s) 1050
BspTNI GGTCTC 1 cut(s) 876
BsrDI GCAATG 1 cut(s) 562
BsrGI TGTACA 2 cut(s) 693, 936
BsrI ACTGG 4 cut(s) 110, 617, 711, 1075
BssECI CCNNGG 8 cut(s) 333, 444, 489, 835, 886, 919, 945, 1017
BssMI GATC 6 cut(s) 181, 615, 704, 747, 912, 984
BssNI GRCGYC 1 cut(s) 729
BssT1I CCWWGG 3 cut(s) 333, 835, 1017
Bst2UI CCWGG 3 cut(s) 344, 590, 887
Bst4CI ACNGT 6 cut(s) 88, 256, 701, 907, 934, 949
Bst6I CTCTTC 5 cut(s) 38, 53, 158, 170, 1050
BstACI GRCGYC 1 cut(s) 729
BstAUI TGTACA 2 cut(s) 693, 936
BstC8I GCNNGC 2 cut(s) 340, 684
BstDSI CCRYGG 6 cut(s) 333, 444, 489, 835, 919, 945
BstF5I GGATG 2 cut(s) 42, 374
BstFNI CGCG 2 cut(s) 491, 921
BstH2I RGCGCY 1 cut(s) 1017
BstHHI GCGC 3 cut(s) 173, 357, 1016
BstKTI GATC 6 cut(s) 184, 618, 707, 750, 915, 987
BstMAI GTCTC 5 cut(s) 73, 136, 719, 720, 876
BstMBI GATC 6 cut(s) 181, 615, 704, 747, 912, 984
BstMWI GCNNNNNNNGC 4 cut(s) 335, 344, 516, 872
BstNI CCWGG 3 cut(s) 344, 590, 887
BstSCI CCNGG 3 cut(s) 342, 588, 885
BstSFI CTRYAG 2 cut(s) 543, 568
BstUI CGCG 2 cut(s) 491, 921
BstV1I GCAGC 4 cut(s) 477, 529, 615, 673
BstV2I GAAGAC 2 cut(s) 541, 782
BstX2I RGATCY 1 cut(s) 704
BstYI RGATCY 1 cut(s) 704
BsuRI GGCC 6 cut(s) 123, 338, 347, 411, 497, 645
BtgI CCRYGG 6 cut(s) 333, 444, 489, 835, 919, 945
BtsCI GGATG 2 cut(s) 42, 374
BtsIMutI CAGTG 1 cut(s) 474
Cac8I GCNNGC 2 cut(s) 340, 684
CciI TCATGA 1 cut(s) 624
CfoI GCGC 3 cut(s) 173, 357, 1016
Cfr13I GGNCC 2 cut(s) 486, 644
Cfr42I CCGCGG 2 cut(s) 492, 922
CpoI CGGWCCG 1 cut(s) 486
CseI GACGC 1 cut(s) 737
Csp6I GTAC 6 cut(s) 430, 694, 805, 937, 1027, 1116
CspI CGGWCCG 1 cut(s) 486
CviAII CATG 4 cut(s) 334, 625, 836, 1119
CviQI GTAC 6 cut(s) 430, 694, 805, 937, 1027, 1116
DpnI GATC 6 cut(s) 183, 617, 706, 749, 914, 986
DpnII GATC 6 cut(s) 181, 615, 704, 747, 912, 984
EaeI YGGCCR 3 cut(s) 121, 336, 495
Eam1104I CTCTTC 5 cut(s) 38, 53, 158, 170, 1050
EarI CTCTTC 5 cut(s) 38, 53, 158, 170, 1050
EciI GGCGGA 5 cut(s) 28, 47, 61, 315, 430
Eco130I CCWWGG 3 cut(s) 333, 835, 1017
Eco31I GGTCTC 1 cut(s) 876
Eco47I GGWCC 1 cut(s) 486
Eco88I CYCGRG 1 cut(s) 646
EcoRII CCWGG 3 cut(s) 342, 588, 885
EcoT14I CCWWGG 3 cut(s) 333, 835, 1017
ErhI CCWWGG 3 cut(s) 333, 835, 1017
Esp3I CGTCTC 1 cut(s) 720
FaeI CATG 4 cut(s) 337, 628, 839, 1122
FaqI GGGAC 1 cut(s) 988
FatI CATG 4 cut(s) 333, 624, 835, 1118
FauI CCCGC 2 cut(s) 687, 914
FbaI TGATCA 1 cut(s) 912
Fnu4HI GCNGC 9 cut(s) 75, 99, 121, 330, 466, 543, 604, 687, 919
FokI GGATG 2 cut(s) 29, 361
Fsp4HI GCNGC 9 cut(s) 75, 99, 121, 330, 466, 543, 604, 687, 919
FspBI CTAG 2 cut(s) 419, 608
FspI TGCGCA 1 cut(s) 172
GlaI GCGC 3 cut(s) 172, 356, 1015
GluI GCNGC 9 cut(s) 75, 99, 121, 330, 466, 543, 604, 687, 919
GsuI CTGGAG 2 cut(s) 295, 694
HaeII RGCGCY 1 cut(s) 1017
HaeIII GGCC 6 cut(s) 123, 338, 347, 411, 497, 645
HapII CCGG 4 cut(s) 113, 516, 732, 759
HgaI GACGC 1 cut(s) 737
HhaI GCGC 3 cut(s) 173, 357, 1016
Hin1I GRCGYC 1 cut(s) 729
Hin1II CATG 4 cut(s) 337, 628, 839, 1122
Hin6I GCGC 3 cut(s) 171, 355, 1014
HinP1I GCGC 3 cut(s) 171, 355, 1014
HincII GTYRAC 1 cut(s) 537
HindII GTYRAC 1 cut(s) 537
HinfI GANTC 4 cut(s) 503, 735, 762, 1093
HpaII CCGG 4 cut(s) 113, 516, 732, 759
HphI GGTGA 3 cut(s) 76, 148, 219
Hpy166II GTNNAC 2 cut(s) 537, 937
Hpy188I TCNGA 2 cut(s) 260, 930
Hpy188III TCNNGA 2 cut(s) 113, 625
Hpy8I GTNNAC 2 cut(s) 537, 937
HpyAV CCTTC 5 cut(s) 253, 334, 412, 444, 653
HpyCH4III ACNGT 6 cut(s) 88, 256, 701, 907, 934, 949
HpyCH4IV ACGT 2 cut(s) 621, 629
HpyCH4V TGCA 3 cut(s) 545, 560, 689
HpyF10VI GCNNNNNNNGC 4 cut(s) 335, 344, 516, 872
HpySE526I ACGT 2 cut(s) 621, 629
Hsp92I GRCGYC 1 cut(s) 729
Hsp92II CATG 4 cut(s) 337, 628, 839, 1122
HspAI GCGC 3 cut(s) 171, 355, 1014
Kpn2I TCCGGA 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 912
KspI CCGCGG 2 cut(s) 492, 922
Kzo9I GATC 6 cut(s) 181, 615, 704, 747, 912, 984
LguI GCTCTTC 1 cut(s) 1050
Lsp1109I GCAGC 4 cut(s) 477, 529, 615, 673
MaeI CTAG 2 cut(s) 419, 608
MaeII ACGT 2 cut(s) 621, 629
MaeIII GTNAC 4 cut(s) 205, 956, 989, 1052
MalI GATC 6 cut(s) 183, 617, 706, 749, 914, 986
MboI GATC 6 cut(s) 181, 615, 704, 747, 912, 984
MboII GAAGA 9 cut(s) 14, 25, 40, 145, 157, 541, 782, 787, 1037
MflI RGATCY 1 cut(s) 704
MlsI TGGCCA 2 cut(s) 338, 497
MluCI AATT 3 cut(s) 233, 383, 815
MluNI TGGCCA 2 cut(s) 338, 497
MlyI GAGTC 2 cut(s) 512, 1087
MmeI TCCRAC 1 cut(s) 283
Mox20I TGGCCA 2 cut(s) 338, 497
MroI TCCGGA 1 cut(s) 112
MscI TGGCCA 2 cut(s) 338, 497
MseI TTAA 2 cut(s) 93, 821
MslI CAYNNNNRTG 3 cut(s) 449, 1071, 1123
Msp20I TGGCCA 2 cut(s) 338, 497
MspA1I CMGCKG 5 cut(s) 120, 491, 542, 686, 921
MspI CCGG 4 cut(s) 113, 516, 732, 759
MspR9I CCNGG 3 cut(s) 344, 590, 887
Mva1269I GAATGC 2 cut(s) 173, 362
MvaI CCWGG 3 cut(s) 344, 590, 887
MvnI CGCG 2 cut(s) 491, 921
MwoI GCNNNNNNNGC 4 cut(s) 335, 344, 516, 872
NcoI CCATGG 2 cut(s) 333, 835
NdeII GATC 6 cut(s) 181, 615, 704, 747, 912, 984
NlaIII CATG 4 cut(s) 337, 628, 839, 1122
NlaIV GGNNCC 1 cut(s) 706
NmeAIII GCCGAG 2 cut(s) 331, 842
NsbI TGCGCA 1 cut(s) 172
PagI TCATGA 1 cut(s) 624
PciSI GCTCTTC 1 cut(s) 1050
PcsI WCGNNNNNNNCGW 1 cut(s) 735
PctI GAATGC 2 cut(s) 173, 362
PfeI GAWTC 2 cut(s) 735, 762
Pfl23II CGTACG 1 cut(s) 1026
PkrI GCNGC 9 cut(s) 76, 100, 122, 331, 467, 544, 605, 688, 920
PleI GAGTC 2 cut(s) 511, 1087
PpsI GAGTC 2 cut(s) 511, 1087
Psp6I CCWGG 3 cut(s) 342, 588, 885
PspGI CCWGG 3 cut(s) 342, 588, 885
PspLI CGTACG 1 cut(s) 1026
PspN4I GGNNCC 1 cut(s) 706
PspPI GGNCC 2 cut(s) 486, 644
PstI CTGCAG 1 cut(s) 547
PsuI RGATCY 1 cut(s) 704
PvuII CAGCTG 2 cut(s) 542, 686
RsaI GTAC 6 cut(s) 431, 695, 806, 938, 1028, 1117
RsaNI GTAC 6 cut(s) 430, 694, 805, 937, 1027, 1116
RseI CAYNNNNRTG 3 cut(s) 449, 1071, 1123
Rsr2I CGGWCCG 1 cut(s) 486
RsrII CGGWCCG 1 cut(s) 486
SacII CCGCGG 2 cut(s) 492, 922
SapI GCTCTTC 1 cut(s) 1050
SaqAI TTAA 2 cut(s) 93, 821
SatI GCNGC 9 cut(s) 75, 99, 121, 330, 466, 543, 604, 687, 919
Sau3AI GATC 6 cut(s) 181, 615, 704, 747, 912, 984
Sau96I GGNCC 2 cut(s) 486, 644
SchI GAGTC 2 cut(s) 512, 1087
ScrFI CCNGG 3 cut(s) 344, 590, 887
SfcI CTRYAG 2 cut(s) 543, 568
SfiI GGCCNNNNNGGCC 1 cut(s) 344
Sfr303I CCGCGG 2 cut(s) 492, 922
SgrBI CCGCGG 2 cut(s) 492, 922
SinI GGWCC 1 cut(s) 486
SmiMI CAYNNNNRTG 3 cut(s) 449, 1071, 1123
SmlI CTYRAG 1 cut(s) 849
SmoI CTYRAG 1 cut(s) 849
Sse9I AATT 3 cut(s) 233, 383, 815
SspMI CTAG 2 cut(s) 419, 608
StyD4I CCNGG 3 cut(s) 342, 588, 885
StyI CCWWGG 3 cut(s) 333, 835, 1017
TaaI ACNGT 6 cut(s) 88, 256, 701, 907, 934, 949
TaiI ACGT 2 cut(s) 624, 632
TaqI TCGA 1 cut(s) 599
TasI AATT 3 cut(s) 233, 383, 815
TatI WGTACW 3 cut(s) 693, 936, 1115
TauI GCSGC 5 cut(s) 77, 101, 123, 332, 921
TfiI GAWTC 2 cut(s) 735, 762
Tru1I TTAA 2 cut(s) 93, 821
Tru9I TTAA 2 cut(s) 93, 821
TscAI CASTG 1 cut(s) 481
TseI GCWGC 4 cut(s) 465, 542, 603, 686
TspDTI ATGAA 1 cut(s) 355
TspGWI ACGGA 2 cut(s) 461, 783
TspRI CASTG 1 cut(s) 481
VpaK11BI GGWCC 1 cut(s) 486
XspI CTAG 2 cut(s) 419, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.