Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004690

Physical Location & Seq

Genomic Coordinates Reverse (-)

10739567 .. 10740620

Gene Structure 1054 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G19740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCAAGTAACCGCACCTCTCGAGAATCGTTCATTTCGTCTTCGATCTCGATCGCTAGATCTCTCGGATTTTATGGACTTGATCTGGCTTGGGAGTACCCAAACAATGATGTGGAGATGAACAACTTCGGGAAACTACTTCAAGAATGGCGATCCGCAGTTGAGGTCGAGTCTCAACGTACCGGAATAAGGCCTTTGCTTTTGACGGCTGCGGTTTACTACACCTCAGATTACAATTCGGTTTCCTACCCGGTCCAAGCGATCAACAGAAGCTTAGATTGGGTTAATCTTATCGCTTATGAGTTTTATGGTTTGACCACTGAAATCGGTCCACCTGCCGGGTTGTATGATCCTTCCATTAAAGGTCCATGCGGCGACACCGGTTTGAAACATTGGCTTAAGGCCGGACTTCCGGAGAAGAAAGCAGTCTTTGGATTTCCATACGTTGGCTGGTCCTGGACTCTCGACGACGACAAGGACCACGGTGATGATGTTGCGGTCACCCACCGAGTTGCCGTGACTGCTAACGGTTCGATCAACTATGATCAGATAGTTAAATTCATAACGGAATACAAAGCTAGAACGGTTTATGACTCGGAAGTGGTCGGATTTTACTGTATCGCTGGGACAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0006950 GO:0006970 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0008843 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0016787 GO:0016798 GO:0017144 GO:0030312 GO:0033993 GO:0035885 GO:0042221 GO:0042737 GO:0043170 GO:0044237 GO:0044248 GO:0044464 GO:0046348 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0097367 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

211

Amino Acids

23.54

Weight (kDa)

4.95

Isoelectric Point (pI)

33.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	1 - 208	3.5e-38	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19720 AT4G19740 AT4G19750 AT4G19760 AT4G19770 AT4G19800 AT4G19810 AT4G19810 AT4G19820
fragaria_vesca	FvH4_1g01321 FvH4_1g01362 FvH4_1g01382
malus_domestica	MD02G1011100.v1.1 MD15G1156100.v1.1
prunus_persica	Prupe.4G180800_v2.0.a1 Prupe.7G258500_v2.0.a1 Prupe.7G259000_v2.0.a1
pyrus_communis	pycom02g01000
rosa_chinensis	RchiOBHm_Chr2g0086161
rosa_laevigata	RLG00000027969 RLG00000033389
rosa_multiflora	Rmu_co8454935.1_g000002 Rmu_sc0004510.1_g000010 Rmu_sc0004948.1_g000003 Rmu_sc0004948.1_g000021
rosa_roxburghii	Rroxscaffold_152G00434840
rosa_rugosa	Rorug01G0466300
rosa_samantha	Rh2AG016100 Rh2CG017000 Rh2DG018100
rosa_wichuraiana	Rw2G001390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	343
Acc36I	ACCTGC	1 cut(s)	343
AccB7I	CCANNNNNTGG	1 cut(s)	446
AccIII	TCCGGA	1 cut(s)	412
AciI	CCGC	5 cut(s)	13, 156, 212, 372, 497
AclWI	GGATC	2 cut(s)	147, 344
AcsI	RAATTY	1 cut(s)	557
AfaI	GTAC	2 cut(s)	98, 181
AfiI	CCNNNNNNNGG	3 cut(s)	189, 338, 446
AflII	CTTAAG	1 cut(s)	398
AgeI	ACCGGT	1 cut(s)	380
AgsI	TTSAA	2 cut(s)	143, 388
AjnI	CCWGG	1 cut(s)	455
AjuI	GAANNNNNNNTTGG	2 cut(s)	262, 294
AluBI	AGCT	2 cut(s)	273, 578
AluI	AGCT	2 cut(s)	273, 578
Alw26I	GTCTC	1 cut(s)	177
AlwI	GGATC	2 cut(s)	147, 344
Ama87I	CYCGRG	1 cut(s)	21
Aor13HI	TCCGGA	1 cut(s)	412
AoxI	GGCC	2 cut(s)	191, 402
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	1 cut(s)	557
AsiGI	ACCGGT	1 cut(s)	380
Asp700I	GAANNNNTTC	1 cut(s)	125
AspS9I	GGNCC	5 cut(s)	253, 329, 365, 453, 478
AsuC2I	CCSGG	2 cut(s)	251, 340
AsuHPI	GGTGA	2 cut(s)	493, 497
AvaI	CYCGRG	1 cut(s)	21
AvaII	GGWCC	5 cut(s)	253, 329, 365, 453, 478
BbsI	GAAGAC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	196
BceAI	ACGGC	2 cut(s)	222, 500
BciT130I	CCWGG	1 cut(s)	457
BclI	TGATCA	1 cut(s)	544
BcnI	CCSGG	2 cut(s)	251, 340
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	2 cut(s)	57, 579
BfrI	CTTAAG	1 cut(s)	398
BfuAI	ACCTGC	1 cut(s)	343
BglII	AGATCT	1 cut(s)	59
BisI	GCNGC	2 cut(s)	210, 373
BlsI	GCNGC	2 cut(s)	211, 374
Bme1390I	CCNGG	3 cut(s)	251, 340, 457
Bme18I	GGWCC	5 cut(s)	253, 329, 365, 453, 478
BmeT110I	CYCGRG	1 cut(s)	21
BmgT120I	GGNCC	5 cut(s)	253, 329, 365, 453, 478
BmrFI	CCNGG	3 cut(s)	251, 340, 457
BpiI	GAAGAC	1 cut(s)	33
BpuMI	CCSGG	2 cut(s)	251, 340
BsaBI	GATNNNNATC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	481
BsaWI	WCCGGW	3 cut(s)	182, 380, 412
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 338, 446
Bse118I	RCCGGY	1 cut(s)	380
Bse8I	GATNNNNATC	1 cut(s)	50
BseAI	TCCGGA	1 cut(s)	412
BseBI	CCWGG	1 cut(s)	457
BseDI	CCNNGG	1 cut(s)	481
BseJI	GATNNNNATC	1 cut(s)	50
BseLI	CCNNNNNNNGG	3 cut(s)	189, 338, 446
BseMII	CTCAG	1 cut(s)	240
BseXI	GCAGC	1 cut(s)	196
BseYI	CCCAGC	1 cut(s)	623
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	2 cut(s)	193, 404
BshTI	ACCGGT	1 cut(s)	380
BsiEI	CGRYCG	1 cut(s)	54
BsiHKCI	CYCGRG	1 cut(s)	21
BsiSI	CCGG	6 cut(s)	183, 251, 339, 381, 405, 413
BslI	CCNNNNNNNGG	3 cut(s)	189, 338, 446
BsmAI	GTCTC	1 cut(s)	177
BsnI	GGCC	2 cut(s)	193, 404
BsoBI	CYCGRG	1 cut(s)	21
Bsp13I	TCCGGA	1 cut(s)	412
Bsp143I	GATC	9 cut(s)	45, 51, 59, 82, 152, 261, 349, 534, 544
BspACI	CCGC	5 cut(s)	13, 156, 212, 372, 497
BspANI	GGCC	2 cut(s)	193, 404
BspCNI	CTCAG	1 cut(s)	239
BspEI	TCCGGA	1 cut(s)	412
BspMI	ACCTGC	1 cut(s)	343
BspPI	GGATC	2 cut(s)	147, 344
BspTI	CTTAAG	1 cut(s)	398
BsrFI	RCCGGY	1 cut(s)	380
BssAI	RCCGGY	1 cut(s)	380
BssECI	CCNNGG	1 cut(s)	481
BssMI	GATC	9 cut(s)	45, 51, 59, 82, 152, 261, 349, 534, 544
Bst2UI	CCWGG	1 cut(s)	457
Bst4CI	ACNGT	4 cut(s)	485, 530, 586, 617
BstAFI	CTTAAG	1 cut(s)	398
BstDEI	CTNAG	2 cut(s)	226, 274
BstDSI	CCRYGG	1 cut(s)	481
BstEII	GGTNACC	1 cut(s)	499
BstKTI	GATC	9 cut(s)	48, 54, 62, 85, 155, 264, 352, 537, 547
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	9 cut(s)	45, 51, 59, 82, 152, 261, 349, 534, 544
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	1 cut(s)	521
BstNI	CCWGG	1 cut(s)	457
BstPI	GGTNACC	1 cut(s)	499
BstSCI	CCNGG	3 cut(s)	249, 338, 455
BstV1I	GCAGC	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BsuRI	GGCC	2 cut(s)	193, 404
BtgI	CCRYGG	1 cut(s)	481
BtsIMutI	CAGTG	1 cut(s)	318
BveI	ACCTGC	1 cut(s)	343
Cfr10I	RCCGGY	1 cut(s)	380
Cfr13I	GGNCC	5 cut(s)	253, 329, 365, 453, 478
Csp6I	GTAC	2 cut(s)	97, 180
CspAI	ACCGGT	1 cut(s)	380
CviAII	CATG	1 cut(s)	369
CviJI	RGCY	8 cut(s)	89, 193, 209, 273, 397, 404, 450, 578
CviKI_1	RGCY	8 cut(s)	89, 193, 209, 273, 397, 404, 450, 578
CviQI	GTAC	2 cut(s)	97, 180
DdeI	CTNAG	2 cut(s)	226, 274
DpnI	GATC	9 cut(s)	47, 53, 61, 84, 154, 263, 351, 536, 546
DpnII	GATC	9 cut(s)	45, 51, 59, 82, 152, 261, 349, 534, 544
Eco147I	AGGCCT	1 cut(s)	193
Eco47I	GGWCC	5 cut(s)	253, 329, 365, 453, 478
Eco88I	CYCGRG	1 cut(s)	21
Eco91I	GGTNACC	1 cut(s)	499
EcoO65I	GGTNACC	1 cut(s)	499
EcoRII	CCWGG	1 cut(s)	455
FaeI	CATG	1 cut(s)	372
FaiI	YATR	9 cut(s)	75, 300, 309, 348, 370, 442, 543, 563, 591
FatI	CATG	1 cut(s)	368
FbaI	TGATCA	1 cut(s)	544
Fnu4HI	GCNGC	2 cut(s)	210, 373
Fsp4HI	GCNGC	2 cut(s)	210, 373
FspBI	CTAG	2 cut(s)	57, 579
GluI	GCNGC	2 cut(s)	210, 373
GsaI	CCCAGC	1 cut(s)	627
HaeIII	GGCC	2 cut(s)	193, 404
HapII	CCGG	6 cut(s)	183, 251, 339, 381, 405, 413
Hin1II	CATG	1 cut(s)	372
HindIII	AAGCTT	1 cut(s)	271
HinfI	GANTC	4 cut(s)	26, 170, 460, 593
HpaII	CCGG	6 cut(s)	183, 251, 339, 381, 405, 413
HphI	GGTGA	2 cut(s)	493, 497
Hpy166II	GTNNAC	2 cut(s)	217, 332
Hpy188I	TCNGA	5 cut(s)	68, 229, 549, 598, 608
Hpy188III	TCNNGA	7 cut(s)	21, 23, 49, 130, 143, 413, 464
Hpy8I	GTNNAC	2 cut(s)	217, 332
Hpy99I	CGWCG	2 cut(s)	470, 473
HpyAV	CCTTC	1 cut(s)	363
HpyCH4III	ACNGT	4 cut(s)	485, 530, 586, 617
HpyCH4IV	ACGT	2 cut(s)	178, 444
HpyF10VI	GCNNNNNNNGC	1 cut(s)	521
HpyF3I	CTNAG	2 cut(s)	226, 274
HpySE526I	ACGT	2 cut(s)	178, 444
Hsp92II	CATG	1 cut(s)	372
Kpn2I	TCCGGA	1 cut(s)	412
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	9 cut(s)	45, 51, 59, 82, 152, 261, 349, 534, 544
Lsp1109I	GCAGC	1 cut(s)	196
MaeI	CTAG	2 cut(s)	57, 579
MaeII	ACGT	2 cut(s)	178, 444
MaeIII	GTNAC	3 cut(s)	8, 499, 517
MalI	GATC	9 cut(s)	47, 53, 61, 84, 154, 263, 351, 536, 546
MboI	GATC	9 cut(s)	45, 51, 59, 82, 152, 261, 349, 534, 544
MboII	GAAGA	2 cut(s)	33, 430
MflI	RGATCY	1 cut(s)	59
MluCI	AATT	2 cut(s)	235, 557
MlyI	GAGTC	3 cut(s)	179, 454, 587
MmeI	TCCRAC	1 cut(s)	586
MnlI	CCTC	3 cut(s)	28, 157, 235
MroI	TCCGGA	1 cut(s)	412
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	4 cut(s)	285, 360, 399, 555
MslI	CAYNNNNRTG	1 cut(s)	486
MspCI	CTTAAG	1 cut(s)	398
MspI	CCGG	6 cut(s)	183, 251, 339, 381, 405, 413
MspR9I	CCNGG	3 cut(s)	251, 340, 457
MvaI	CCWGG	1 cut(s)	457
MwoI	GCNNNNNNNGC	1 cut(s)	521
NciI	CCSGG	2 cut(s)	251, 340
NdeII	GATC	9 cut(s)	45, 51, 59, 82, 152, 261, 349, 534, 544
NlaIII	CATG	1 cut(s)	372
NmuCI	GTSAC	2 cut(s)	499, 517
PaeR7I	CTCGAG	1 cut(s)	21
PaqCI	CACCTGC	1 cut(s)	343
PceI	AGGCCT	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	26
PflMI	CCANNNNNTGG	1 cut(s)	446
PfoI	TCCNGGA	1 cut(s)	455
PinAI	ACCGGT	1 cut(s)	380
PkrI	GCNGC	2 cut(s)	211, 374
Ple19I	CGATCG	1 cut(s)	54
PleI	GAGTC	3 cut(s)	178, 454, 587
PpsI	GAGTC	3 cut(s)	178, 454, 587
Psp6I	CCWGG	1 cut(s)	455
PspEI	GGTNACC	1 cut(s)	499
PspFI	CCCAGC	1 cut(s)	623
PspGI	CCWGG	1 cut(s)	455
PspPI	GGNCC	5 cut(s)	253, 329, 365, 453, 478
PsuI	RGATCY	1 cut(s)	59
PvuI	CGATCG	1 cut(s)	54
RsaI	GTAC	2 cut(s)	98, 181
RsaNI	GTAC	2 cut(s)	97, 180
RseI	CAYNNNNRTG	1 cut(s)	486
SaqAI	TTAA	4 cut(s)	285, 360, 399, 555
SatI	GCNGC	2 cut(s)	210, 373
Sau3AI	GATC	9 cut(s)	45, 51, 59, 82, 152, 261, 349, 534, 544
Sau96I	GGNCC	5 cut(s)	253, 329, 365, 453, 478
SchI	GAGTC	3 cut(s)	179, 454, 587
ScrFI	CCNGG	3 cut(s)	251, 340, 457
SetI	ASST	9 cut(s)	20, 168, 181, 227, 275, 337, 367, 447, 580
Sfr274I	CTCGAG	1 cut(s)	21
SinI	GGWCC	5 cut(s)	253, 329, 365, 453, 478
SlaI	CTCGAG	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	486
SmlI	CTYRAG	2 cut(s)	21, 398
SmoI	CTYRAG	2 cut(s)	21, 398
Sse9I	AATT	2 cut(s)	235, 557
SseBI	AGGCCT	1 cut(s)	193
SsiI	CCGC	5 cut(s)	13, 156, 212, 372, 497
SspMI	CTAG	2 cut(s)	57, 579
StuI	AGGCCT	1 cut(s)	193
StyD4I	CCNGG	3 cut(s)	249, 338, 455
TaaI	ACNGT	4 cut(s)	485, 530, 586, 617
TaiI	ACGT	2 cut(s)	181, 447
TaqI	TCGA	6 cut(s)	22, 44, 50, 168, 465, 533
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	2 cut(s)	235, 557
TauI	GCSGC	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	4 cut(s)	285, 360, 399, 555
Tru9I	TTAA	4 cut(s)	285, 360, 399, 555
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	2 cut(s)	499, 517
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	2 cut(s)	499, 517
TspDTI	ATGAA	3 cut(s)	22, 134, 550
TspGWI	ACGGA	1 cut(s)	581
TspRI	CASTG	1 cut(s)	325
Van91I	CCANNNNNTGG	1 cut(s)	446
Vha464I	CTTAAG	1 cut(s)	398
VpaK11BI	GGWCC	5 cut(s)	253, 329, 365, 453, 478
XapI	RAATTY	1 cut(s)	557
XcmI	CCANNNNNNNNNTGG	1 cut(s)	447
XhoI	CTCGAG	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	2 cut(s)	57, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.