FvH4_1g01362

Glyco_18

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
684018 .. 685259
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01362.t1

Sequence Viewer

Length: 1002 bp
ATGATGAAAAGTTCCTCCAAAATACTCTTCACCCACCTCTTCTGTGCTTTCGCAGATCTCAACCCCACCACTTACCAAGTCGCCATTTCCTCCGCAAACTCGCCTCAGTTCTCAACTTTCACTCAAACAGTCCAACAGAAAAACCCTAACGTCAAAACCCTCCTCTCCATTGGCGGAGGAAACTCCAGCCCCTCCACCTTCGCCGCCATGGCCAGCCAGGCCGCTCGTCGCAAAGCATTTATAGACTCGTCCATCAAATTAGCGAGAAACTACTCCTTCTACGGCCTTGACCTAGATTGGGAGTACCCTTCCTCCGCCACCGAGATGACCAACTTCGGCAGCCTCCTCACGGAATGGCGCTCCGCGGTGGCCAACGAGTCAAGCACCTCCGGCAAGACGGCGTTGCTGTTGACCGCTGCAGTCTTCCGGAATGCGGATTACTACAGCATAAACTATCCGTTCCAGGCTGTTTCGAGCAGCCTGGACTGGATCAACGTCATGACGTACGATTACTACGGTCCTAGTTTCGCCGAAGGTAAAACAAAAACTTACCCGCCAGCTGCATTATACAACGGCCGATCCACCACTCTCATCAACGGAGACGCCGGAATCGTGTCGTGGATCAACAACGCCGGAATCTCAACCAAGAAGATAGTCATTGGTCTTCCGTTTTATGGGTACGCTTGGAGATTGTTAAACTCTAATAACCATGCATTTTTCGCTCCGGCTAATGGCTCGGCTATCGGAGCTAACGGAGACCAGGGTTACAACCAGATTAGGGTTTTGATCAGCCGAGGGTTTCAGACGGTGTACAATGCGACGGTGGTTAGTAACTACTGTTACAATGGGACGACTTGGATTGGTTACGATGATACGCAGAGTATTGGCGCCAAGGTTTCGTATGCTAAAGGAAAGTCTCTTCTTGGTTACTTTGCTTGGCATACTGGTGCTGACACGACTACCTGGACTCTCTCTCAAACAGCTTTCAGTACATGGGGATGA

Protein Analysis

334

Amino Acids

36.32

Weight (kDa)

9.1

Isoelectric Point (pI)

28.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 9 - 318 4e-71 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 887
AccBSI CCGCTC 1 cut(s) 224
AccII CGCG 1 cut(s) 365
AccIII TCCGGA 1 cut(s) 426
AclWI GGATC 3 cut(s) 497, 573, 629
AcoI YGGCCR 3 cut(s) 210, 369, 574
AcyI GRCGYC 2 cut(s) 603, 888
AfaI GTAC 5 cut(s) 305, 506, 680, 812, 991
AfiI CCNNNNNNNGG 6 cut(s) 298, 349, 433, 674, 731, 778
AjnI CCWGG 5 cut(s) 216, 462, 480, 759, 962
AjuI GAANNNNNNNTTGG 2 cut(s) 11, 43
AluBI AGCT 3 cut(s) 560, 749, 983
AluI AGCT 3 cut(s) 560, 749, 983
Alw26I GTCTC 3 cut(s) 594, 750, 921
AlwI GGATC 3 cut(s) 497, 573, 629
Aor13HI TCCGGA 1 cut(s) 426
AoxI GGCC 5 cut(s) 210, 219, 283, 369, 574
ApeKI GCWGC 4 cut(s) 339, 416, 477, 560
AspLEI GCGC 2 cut(s) 360, 890
AspS9I GGNCC 1 cut(s) 518
AsuHPI GGTGA 1 cut(s) 22
AvaII GGWCC 1 cut(s) 518
BalI TGGCCA 2 cut(s) 212, 371
BanI GGYRCC 1 cut(s) 887
BbsI GAAGAC 2 cut(s) 415, 656
BbvI GCAGC 4 cut(s) 351, 403, 489, 547
BccI CCATC 1 cut(s) 260
BceAI ACGGC 3 cut(s) 298, 414, 589
BciT130I CCWGG 5 cut(s) 218, 464, 482, 761, 964
BclI TGATCA 1 cut(s) 786
BcoDI GTCTC 3 cut(s) 594, 750, 921
BfaI CTAG 2 cut(s) 293, 522
BfmI CTRYAG 2 cut(s) 417, 442
BfoI RGCGCY 2 cut(s) 361, 891
BglI GCCNNNNNGGC 2 cut(s) 209, 218
BglII AGATCT 1 cut(s) 55
BisI GCNGC 6 cut(s) 204, 222, 340, 417, 478, 561
BlsI GCNGC 6 cut(s) 205, 223, 341, 418, 479, 562
Bme1390I CCNGG 5 cut(s) 218, 464, 482, 761, 964
Bme18I GGWCC 1 cut(s) 518
BmgT120I GGNCC 1 cut(s) 518
BmiI GGNNCC 1 cut(s) 889
BmrFI CCNGG 5 cut(s) 218, 464, 482, 761, 964
BpiI GAAGAC 2 cut(s) 415, 656
BpmI CTGGAG 1 cut(s) 169
BsaHI GRCGYC 2 cut(s) 603, 888
BsaI GGTCTC 1 cut(s) 750
BsaJI CCNNGG 5 cut(s) 207, 363, 760, 793, 891
BsaWI WCCGGW 1 cut(s) 426
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 6 cut(s) 298, 349, 433, 674, 731, 778
Bse1I ACTGG 2 cut(s) 491, 949
BseAI TCCGGA 1 cut(s) 426
BseBI CCWGG 5 cut(s) 218, 464, 482, 761, 964
BseDI CCNNGG 5 cut(s) 207, 363, 760, 793, 891
BseLI CCNNNNNNNGG 6 cut(s) 298, 349, 433, 674, 731, 778
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 2 cut(s) 491, 949
BseRI GAGGAG 2 cut(s) 152, 335
BseX3I CGGCCG 1 cut(s) 574
BseXI GCAGC 4 cut(s) 351, 403, 489, 547
Bsh1236I CGCG 1 cut(s) 365
Bsh1285I CGRYCG 1 cut(s) 577
BshFI GGCC 5 cut(s) 212, 221, 285, 371, 576
BshNI GGYRCC 1 cut(s) 887
BsiEI CGRYCG 1 cut(s) 577
BsiSI CCGG 5 cut(s) 390, 427, 606, 633, 725
BsiWI CGTACG 1 cut(s) 504
BslFI GGGAC 1 cut(s) 862
BslI CCNNNNNNNGG 6 cut(s) 298, 349, 433, 674, 731, 778
BsmAI GTCTC 3 cut(s) 594, 750, 921
BsmBI CGTCTC 1 cut(s) 594
BsmFI GGGAC 1 cut(s) 862
BsmI GAATGC 1 cut(s) 436
BsnI GGCC 5 cut(s) 212, 221, 285, 371, 576
Bso31I GGTCTC 1 cut(s) 750
Bsp13I TCCGGA 1 cut(s) 426
Bsp1407I TGTACA 1 cut(s) 810
Bsp143I GATC 5 cut(s) 55, 489, 578, 621, 786
Bsp19I CCATGG 1 cut(s) 207
BspANI GGCC 5 cut(s) 212, 221, 285, 371, 576
BspCNI CTCAG 1 cut(s) 118
BspEI TCCGGA 1 cut(s) 426
BspFNI CGCG 1 cut(s) 365
BspHI TCATGA 1 cut(s) 498
BspLI GGNNCC 1 cut(s) 889
BspMAI CTGCAG 1 cut(s) 421
BspPI GGATC 3 cut(s) 497, 573, 629
BspT107I GGYRCC 1 cut(s) 887
BspTNI GGTCTC 1 cut(s) 750
BsrBI CCGCTC 1 cut(s) 224
BsrGI TGTACA 1 cut(s) 810
BsrI ACTGG 2 cut(s) 491, 949
BssECI CCNNGG 5 cut(s) 207, 363, 760, 793, 891
BssMI GATC 5 cut(s) 55, 489, 578, 621, 786
BssNI GRCGYC 2 cut(s) 603, 888
BssT1I CCWWGG 2 cut(s) 207, 891
Bst2UI CCWGG 5 cut(s) 218, 464, 482, 761, 964
Bst4CI ACNGT 5 cut(s) 130, 518, 808, 823, 839
Bst6I CTCTTC 3 cut(s) 32, 44, 924
BstACI GRCGYC 2 cut(s) 603, 888
BstAUI TGTACA 1 cut(s) 810
BstC8I GCNNGC 2 cut(s) 214, 558
BstDEI CTNAG 1 cut(s) 105
BstDSI CCRYGG 2 cut(s) 207, 363
BstFNI CGCG 1 cut(s) 365
BstH2I RGCGCY 2 cut(s) 361, 891
BstHHI GCGC 2 cut(s) 360, 890
BstKTI GATC 5 cut(s) 58, 492, 581, 624, 789
BstMAI GTCTC 3 cut(s) 594, 750, 921
BstMBI GATC 5 cut(s) 55, 489, 578, 621, 786
BstMCI CGRYCG 1 cut(s) 577
BstMWI GCNNNNNNNGC 5 cut(s) 209, 218, 390, 719, 746
BstNI CCWGG 5 cut(s) 218, 464, 482, 761, 964
BstSCI CCNGG 5 cut(s) 216, 462, 480, 759, 962
BstSFI CTRYAG 2 cut(s) 417, 442
BstUI CGCG 1 cut(s) 365
BstV1I GCAGC 4 cut(s) 351, 403, 489, 547
BstV2I GAAGAC 2 cut(s) 415, 656
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BstZI CGGCCG 1 cut(s) 574
BsuRI GGCC 5 cut(s) 212, 221, 285, 371, 576
BtgI CCRYGG 2 cut(s) 207, 363
Cac8I GCNNGC 2 cut(s) 214, 558
CciI TCATGA 1 cut(s) 498
CfoI GCGC 2 cut(s) 360, 890
Cfr13I GGNCC 1 cut(s) 518
Cfr42I CCGCGG 1 cut(s) 366
CseI GACGC 1 cut(s) 611
Csp6I GTAC 5 cut(s) 304, 505, 679, 811, 990
CviAII CATG 4 cut(s) 208, 499, 710, 993
CviQI GTAC 5 cut(s) 304, 505, 679, 811, 990
DdeI CTNAG 1 cut(s) 105
DinI GGCGCC 1 cut(s) 889
DpnI GATC 5 cut(s) 57, 491, 580, 623, 788
DpnII GATC 5 cut(s) 55, 489, 578, 621, 786
EaeI YGGCCR 3 cut(s) 210, 369, 574
EagI CGGCCG 1 cut(s) 574
Eam1104I CTCTTC 3 cut(s) 32, 44, 924
EarI CTCTTC 3 cut(s) 32, 44, 924
EciI GGCGGA 2 cut(s) 189, 304
EclXI CGGCCG 1 cut(s) 574
Eco130I CCWWGG 2 cut(s) 207, 891
Eco31I GGTCTC 1 cut(s) 750
Eco47I GGWCC 1 cut(s) 518
Eco52I CGGCCG 1 cut(s) 574
EcoRII CCWGG 5 cut(s) 216, 462, 480, 759, 962
EcoT14I CCWWGG 2 cut(s) 207, 891
EcoT22I ATGCAT 1 cut(s) 715
EgeI GGCGCC 1 cut(s) 889
EheI GGCGCC 1 cut(s) 889
ErhI CCWWGG 2 cut(s) 207, 891
Esp3I CGTCTC 1 cut(s) 594
FaeI CATG 4 cut(s) 211, 502, 713, 996
FaqI GGGAC 1 cut(s) 862
FatI CATG 4 cut(s) 207, 498, 709, 992
FauI CCCGC 1 cut(s) 561
FbaI TGATCA 1 cut(s) 786
Fnu4HI GCNGC 6 cut(s) 204, 222, 340, 417, 478, 561
Fsp4HI GCNGC 6 cut(s) 204, 222, 340, 417, 478, 561
FspBI CTAG 2 cut(s) 293, 522
GlaI GCGC 2 cut(s) 359, 889
GluI GCNGC 6 cut(s) 204, 222, 340, 417, 478, 561
GsuI CTGGAG 1 cut(s) 169
HaeII RGCGCY 2 cut(s) 361, 891
HaeIII GGCC 5 cut(s) 212, 221, 285, 371, 576
HapII CCGG 5 cut(s) 390, 427, 606, 633, 725
HgaI GACGC 1 cut(s) 611
HhaI GCGC 2 cut(s) 360, 890
Hin1I GRCGYC 2 cut(s) 603, 888
Hin1II CATG 4 cut(s) 211, 502, 713, 996
Hin6I GCGC 2 cut(s) 358, 888
HinP1I GCGC 2 cut(s) 358, 888
HincII GTYRAC 1 cut(s) 411
HindII GTYRAC 1 cut(s) 411
HinfI GANTC 5 cut(s) 245, 377, 609, 636, 967
HpaII CCGG 5 cut(s) 390, 427, 606, 633, 725
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 2 cut(s) 411, 811
Hpy188I TCNGA 2 cut(s) 746, 804
Hpy188III TCNNGA 2 cut(s) 427, 499
Hpy8I GTNNAC 2 cut(s) 411, 811
Hpy99I CGWCG 2 cut(s) 231, 823
HpyAV CCTTC 4 cut(s) 208, 286, 318, 527
HpyCH4III ACNGT 5 cut(s) 130, 518, 808, 823, 839
HpyCH4IV ACGT 3 cut(s) 150, 495, 503
HpyCH4V TGCA 3 cut(s) 419, 563, 713
HpyF10VI GCNNNNNNNGC 5 cut(s) 209, 218, 390, 719, 746
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 3 cut(s) 150, 495, 503
Hsp92I GRCGYC 2 cut(s) 603, 888
Hsp92II CATG 4 cut(s) 211, 502, 713, 996
HspAI GCGC 2 cut(s) 358, 888
KasI GGCGCC 1 cut(s) 887
Kpn2I TCCGGA 1 cut(s) 426
Ksp22I TGATCA 1 cut(s) 786
KspI CCGCGG 1 cut(s) 366
Kzo9I GATC 5 cut(s) 55, 489, 578, 621, 786
LmnI GCTCC 3 cut(s) 365, 727, 746
Lsp1109I GCAGC 4 cut(s) 351, 403, 489, 547
MaeI CTAG 2 cut(s) 293, 522
MaeII ACGT 3 cut(s) 150, 495, 503
MaeIII GTNAC 5 cut(s) 764, 830, 839, 863, 926
MalI GATC 5 cut(s) 57, 491, 580, 623, 788
MbiI CCGCTC 1 cut(s) 224
MboI GATC 5 cut(s) 55, 489, 578, 621, 786
MboII GAAGA 6 cut(s) 19, 31, 415, 656, 661, 911
MflI RGATCY 1 cut(s) 55
MlsI TGGCCA 2 cut(s) 212, 371
MluCI AATT 1 cut(s) 257
MluNI TGGCCA 2 cut(s) 212, 371
Mly113I GGCGCC 1 cut(s) 888
MlyI GAGTC 3 cut(s) 239, 386, 961
MmeI TCCRAC 1 cut(s) 157
Mox20I TGGCCA 2 cut(s) 212, 371
Mph1103I ATGCAT 1 cut(s) 715
MroI TCCGGA 1 cut(s) 426
MscI TGGCCA 2 cut(s) 212, 371
MseI TTAA 1 cut(s) 695
MslI CAYNNNNRTG 3 cut(s) 323, 945, 997
Msp20I TGGCCA 2 cut(s) 212, 371
MspA1I CMGCKG 3 cut(s) 365, 416, 560
MspI CCGG 5 cut(s) 390, 427, 606, 633, 725
MspR9I CCNGG 5 cut(s) 218, 464, 482, 761, 964
Mva1269I GAATGC 1 cut(s) 436
MvaI CCWGG 5 cut(s) 218, 464, 482, 761, 964
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 5 cut(s) 209, 218, 390, 719, 746
NarI GGCGCC 1 cut(s) 888
NcoI CCATGG 1 cut(s) 207
NdeII GATC 5 cut(s) 55, 489, 578, 621, 786
NlaIII CATG 4 cut(s) 211, 502, 713, 996
NlaIV GGNNCC 1 cut(s) 889
NmeAIII GCCGAG 2 cut(s) 716, 818
NsiI ATGCAT 1 cut(s) 715
PagI TCATGA 1 cut(s) 498
PcsI WCGNNNNNNNCGW 1 cut(s) 609
PctI GAATGC 1 cut(s) 436
PfeI GAWTC 2 cut(s) 609, 636
Pfl23II CGTACG 1 cut(s) 504
PkrI GCNGC 6 cut(s) 205, 223, 341, 418, 479, 562
PleI GAGTC 3 cut(s) 239, 385, 961
PluTI GGCGCC 1 cut(s) 891
PpsI GAGTC 3 cut(s) 239, 385, 961
Psp6I CCWGG 5 cut(s) 216, 462, 480, 759, 962
PspGI CCWGG 5 cut(s) 216, 462, 480, 759, 962
PspLI CGTACG 1 cut(s) 504
PspN4I GGNNCC 1 cut(s) 889
PspPI GGNCC 1 cut(s) 518
PstI CTGCAG 1 cut(s) 421
PsuI RGATCY 1 cut(s) 55
PvuII CAGCTG 1 cut(s) 560
RsaI GTAC 5 cut(s) 305, 506, 680, 812, 991
RsaNI GTAC 5 cut(s) 304, 505, 679, 811, 990
RseI CAYNNNNRTG 3 cut(s) 323, 945, 997
SacII CCGCGG 1 cut(s) 366
SaqAI TTAA 1 cut(s) 695
SatI GCNGC 6 cut(s) 204, 222, 340, 417, 478, 561
Sau3AI GATC 5 cut(s) 55, 489, 578, 621, 786
Sau96I GGNCC 1 cut(s) 518
SchI GAGTC 3 cut(s) 239, 386, 961
ScrFI CCNGG 5 cut(s) 218, 464, 482, 761, 964
SfcI CTRYAG 2 cut(s) 417, 442
SfiI GGCCNNNNNGGCC 1 cut(s) 218
SfoI GGCGCC 1 cut(s) 889
Sfr303I CCGCGG 1 cut(s) 366
SgrBI CCGCGG 1 cut(s) 366
SinI GGWCC 1 cut(s) 518
SmiMI CAYNNNNRTG 3 cut(s) 323, 945, 997
Sse9I AATT 1 cut(s) 257
SspDI GGCGCC 1 cut(s) 887
SspMI CTAG 2 cut(s) 293, 522
StyD4I CCNGG 5 cut(s) 216, 462, 480, 759, 962
StyI CCWWGG 2 cut(s) 207, 891
TaaI ACNGT 5 cut(s) 130, 518, 808, 823, 839
TaiI ACGT 3 cut(s) 153, 498, 506
TaqI TCGA 1 cut(s) 473
TasI AATT 1 cut(s) 257
TatI WGTACW 2 cut(s) 810, 989
TauI GCSGC 2 cut(s) 206, 224
TfiI GAWTC 2 cut(s) 609, 636
Tru1I TTAA 1 cut(s) 695
Tru9I TTAA 1 cut(s) 695
TseI GCWGC 4 cut(s) 339, 416, 477, 560
TspDTI ATGAA 1 cut(s) 20
TspGWI ACGGA 5 cut(s) 365, 447, 612, 657, 768
VpaK11BI GGWCC 1 cut(s) 518
XspI CTAG 2 cut(s) 293, 522
Zsp2I ATGCAT 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.