AT4G19975

Nucleotide-diphospho-sugar transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006034
Physical Location & Seq
Forward (+)
10823579 .. 10825395
1817 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19975.1

Sequence Viewer

Length: 1065 bp
ATGAACTCTTCTCCTTCTTCTTCTTCTTCCCCTTCAAGTTTTCTTGATTATGGATCTGCGATCGGACAAAAAGAAGTAAAGAAAATCCTGGTTTTGGTTCTAGGTTTAGCTGCTTGTCTTCTTCTTTACAAAACAGCTTATCCTCTTCATCAAGAGCTCGATGTTAACAATCTCAGCTCTCGTCCTTTGCTCGATCACACCTCTTCGTCTTCTCCACTAACAAGATCAAAATCGATCAGTTTTAGGGAAGTTCTGGAGAATGCATCAACAGAGAATCGAACAGTTATTGTAACAACGTTGAACCAAGCATGGGCAGAGCCAAACTCTCTGTTCGATCTATTTCTTGAGAGTTTTCGTATCGGACAAGGAACAAAGAAGTTACTTCAACATGTGGTTGTGGTTTGCTTGGATTCCAAGGCATTTGCTCGCTGCTCACAACTTCACCCTAATTGCTACTATTTGAAAACCACAGGGACTGATTTCTCCGGCGAGAAACTCTTTGCTACTCCTGATTACCTCAAAATGATGTGGCGAAGAATCGAGCTTCTCACACAAGTGCTAGAAATGGGATACAACTTCATCTTCACGGATGCGGATATAATGTGGCTTCGAGATCCATTTCCTCGGCTGTATCCTGATGGAGATTTTCAAATGGCATGTGATCGATTCTTCGGTGATCCTCATGACTCAGACAATTGGGTAAACGGAGGATTCACTTACGTGAAATCAAACCACAGAAGCATCGAGTTCTACAAATTTTGGTACAATTCTCGTCTTGATTATCCGAAGATGCATGACCAAGATGTGTTCAACCAAATCAAACACAAGGCTTTAGTCTCAGAGATTGGAATCCAAATGAGATTCTTTGATACGGTTTACTTTGGTGGGTTTTGTCAAACGAGCAGAGACATAAACTTGGTGTGTACCATGCATGCTAATTGTTGTGTAGGATTAGCGAAGAAGCTTCATGATCTTAATCTTGTTCTTGATGACTGGAGAAACTATTTGTCTTTGTCTGAACCAGTTAAAAACACAACTTGGAGTGTTCCTATGAAGTGTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

354

Amino Acids

40.58

Weight (kDa)

6.78

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 127 - 325 3.1e-73 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 593
AclI AACGTT 1 cut(s) 296
AclWI GGATC 3 cut(s) 61, 608, 671
AcsI RAATTY 1 cut(s) 755
AfaI GTAC 3 cut(s) 764, 925, 1060
AfiI CCNNNNNNNGG 2 cut(s) 94, 310
AflIII ACRYGT 1 cut(s) 388
AgsI TTSAA 6 cut(s) 36, 301, 386, 463, 650, 811
AjnI CCWGG 1 cut(s) 87
AleI CACNNNNGTG 2 cut(s) 554, 719
AluBI AGCT 6 cut(s) 110, 137, 157, 177, 544, 964
AluI AGCT 6 cut(s) 110, 137, 157, 177, 544, 964
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 2 cut(s) 841, 900
AlwI GGATC 3 cut(s) 61, 608, 671
AlwNI CAGNNNCTG 1 cut(s) 476
ApeKI GCWGC 2 cut(s) 110, 429
ApoI RAATTY 1 cut(s) 755
AsuHPI GGTGA 2 cut(s) 434, 686
BanII GRGCYC 1 cut(s) 159
BbsI GAAGAC 2 cut(s) 110, 201
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 97, 416
BccI CCATC 1 cut(s) 632
BciT130I CCWGG 1 cut(s) 89
BciVI GTATCC 2 cut(s) 563, 642
BcoDI GTCTC 2 cut(s) 841, 900
BfaI CTAG 2 cut(s) 101, 560
BfuI GTATCC 2 cut(s) 563, 642
BisI GCNGC 2 cut(s) 111, 430
BlsI GCNGC 2 cut(s) 112, 431
Bme1390I CCNGG 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 4 cut(s) 272, 580, 750, 780
BpiI GAAGAC 2 cut(s) 110, 201
BplI GAGNNNNNCTC 2 cut(s) 308, 340
BpmI CTGGAG 2 cut(s) 275, 1015
BpuEI CTTGAG 1 cut(s) 365
Bsa29I ATCGAT 2 cut(s) 233, 664
BsaAI YACGTR 1 cut(s) 721
BsaBI GATNNNNATC 3 cut(s) 229, 848, 975
BsaJI CCNNGG 2 cut(s) 414, 623
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 310
Bse1I ACTGG 2 cut(s) 998, 1022
Bse8I GATNNNNATC 3 cut(s) 229, 848, 975
BseBI CCWGG 1 cut(s) 89
BseCI ATCGAT 2 cut(s) 233, 664
BseDI CCNNGG 2 cut(s) 414, 623
BseGI GGATG 1 cut(s) 595
BseJI GATNNNNATC 3 cut(s) 229, 848, 975
BseLI CCNNNNNNNGG 2 cut(s) 94, 310
BseMII CTCAG 3 cut(s) 187, 702, 852
BseNI ACTGG 2 cut(s) 998, 1022
BseXI GCAGC 2 cut(s) 97, 416
Bsh1285I CGRYCG 1 cut(s) 63
BshVI ATCGAT 2 cut(s) 233, 664
BsiEI CGRYCG 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 159
BsiSI CCGG 1 cut(s) 486
BslFI GGGAC 1 cut(s) 487
BslI CCNNNNNNNGG 2 cut(s) 94, 310
BsmAI GTCTC 2 cut(s) 841, 900
BsmFI GGGAC 1 cut(s) 487
BsmI GAATGC 1 cut(s) 265
Bsp1286I GDGCHC 1 cut(s) 159
Bsp1407I TGTACA 1 cut(s) 1058
BspACI CCGC 1 cut(s) 593
BspCNI CTCAG 3 cut(s) 186, 701, 851
BspDI ATCGAT 2 cut(s) 233, 664
BspHI TCATGA 2 cut(s) 682, 967
BspPI GGATC 3 cut(s) 61, 608, 671
BsrGI TGTACA 1 cut(s) 1058
BsrI ACTGG 2 cut(s) 998, 1022
BssECI CCNNGG 2 cut(s) 414, 623
BssT1I CCWWGG 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 2 cut(s) 283, 874
Bst6I CTCTTC 3 cut(s) 13, 150, 208
BstAUI TGTACA 1 cut(s) 1058
BstBAI YACGTR 1 cut(s) 721
BstC8I GCNNGC 2 cut(s) 427, 933
BstDEI CTNAG 3 cut(s) 173, 688, 838
BstF5I GGATG 1 cut(s) 595
BstMAI GTCTC 2 cut(s) 841, 900
BstMCI CGRYCG 1 cut(s) 63
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 3 cut(s) 392, 660, 935
BstSCI CCNGG 1 cut(s) 87
BstV1I GCAGC 2 cut(s) 97, 416
BstV2I GAAGAC 2 cut(s) 110, 201
BstX2I RGATCY 2 cut(s) 53, 613
BstYI RGATCY 2 cut(s) 53, 613
Bsu15I ATCGAT 2 cut(s) 233, 664
BsuI GTATCC 2 cut(s) 563, 642
BsuTUI ATCGAT 2 cut(s) 233, 664
BtsCI GGATG 1 cut(s) 595
Cac8I GCNNGC 2 cut(s) 427, 933
CaiI CAGNNNCTG 1 cut(s) 476
CciI TCATGA 2 cut(s) 682, 967
ClaI ATCGAT 2 cut(s) 233, 664
Csp6I GTAC 3 cut(s) 763, 924, 1059
CviAII CATG 9 cut(s) 309, 389, 657, 683, 794, 928, 932, 968, 1062
CviQI GTAC 3 cut(s) 763, 924, 1059
DdeI CTNAG 3 cut(s) 173, 688, 838
Eam1104I CTCTTC 3 cut(s) 13, 150, 208
EarI CTCTTC 3 cut(s) 13, 150, 208
Ecl136II GAGCTC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 414
Eco24I GRGCYC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 157
EcoICRI GAGCTC 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 414
EcoT22I ATGCAT 3 cut(s) 265, 795, 933
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 414
FaeI CATG 9 cut(s) 312, 392, 660, 686, 797, 931, 935, 971, 1065
FaqI GGGAC 1 cut(s) 487
FatI CATG 9 cut(s) 308, 388, 656, 682, 793, 927, 931, 967, 1061
Fnu4HI GCNGC 2 cut(s) 111, 430
FokI GGATG 1 cut(s) 602
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 2 cut(s) 111, 430
FspBI CTAG 2 cut(s) 101, 560
GluI GCNGC 2 cut(s) 111, 430
GsuI CTGGAG 2 cut(s) 275, 1015
HapII CCGG 1 cut(s) 486
Hin1II CATG 9 cut(s) 312, 392, 660, 686, 797, 931, 935, 971, 1065
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 962
HinfI GANTC 8 cut(s) 274, 410, 537, 666, 686, 711, 849, 861
HpaI GTTAAC 1 cut(s) 166
HpaII CCGG 1 cut(s) 486
HphI GGTGA 2 cut(s) 434, 686
Hpy166II GTNNAC 5 cut(s) 166, 703, 877, 924, 1059
Hpy188I TCNGA 6 cut(s) 65, 362, 691, 786, 841, 1018
Hpy8I GTNNAC 5 cut(s) 166, 703, 877, 924, 1059
HpyAV CCTTC 2 cut(s) 24, 42
HpyCH4III ACNGT 2 cut(s) 283, 874
HpyCH4IV ACGT 2 cut(s) 296, 720
HpyCH4V TGCA 3 cut(s) 263, 793, 931
HpyF3I CTNAG 3 cut(s) 173, 688, 838
HpySE526I ACGT 2 cut(s) 296, 720
Hsp92II CATG 9 cut(s) 312, 392, 660, 686, 797, 931, 935, 971, 1065
KspAI GTTAAC 1 cut(s) 166
LpnPI CCDG 9 cut(s) 74, 101, 239, 456, 499, 522, 648, 979, 1035
Lsp1109I GCAGC 2 cut(s) 97, 416
LweI GCATC 4 cut(s) 272, 580, 750, 780
MaeI CTAG 2 cut(s) 101, 560
MaeII ACGT 2 cut(s) 296, 720
MaeIII GTNAC 2 cut(s) 289, 378
MfeI CAATTG 1 cut(s) 694
MflI RGATCY 2 cut(s) 53, 613
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 5 cut(s) 448, 694, 755, 766, 937
MlyI GAGTC 1 cut(s) 680
MnlI CCTC 6 cut(s) 153, 211, 527, 633, 690, 701
Mph1103I ATGCAT 3 cut(s) 265, 795, 933
MseI TTAA 3 cut(s) 165, 975, 1026
MslI CAYNNNNRTG 2 cut(s) 554, 719
MspI CCGG 1 cut(s) 486
MspR9I CCNGG 1 cut(s) 89
MunI CAATTG 1 cut(s) 694
Mva1269I GAATGC 1 cut(s) 265
MvaI CCWGG 1 cut(s) 89
NlaIII CATG 9 cut(s) 312, 392, 660, 686, 797, 931, 935, 971, 1065
NmeAIII GCCGAG 1 cut(s) 604
NsiI ATGCAT 3 cut(s) 265, 795, 933
NspI RCATGY 3 cut(s) 392, 660, 935
OliI CACNNNNGTG 2 cut(s) 554, 719
PaeI GCATGC 1 cut(s) 935
PagI TCATGA 2 cut(s) 682, 967
PciI ACATGT 1 cut(s) 388
PctI GAATGC 1 cut(s) 265
PfeI GAWTC 7 cut(s) 274, 410, 537, 666, 711, 849, 861
PkrI GCNGC 2 cut(s) 112, 431
Ple19I CGATCG 1 cut(s) 63
PleI GAGTC 1 cut(s) 680
PpsI GAGTC 1 cut(s) 680
Ppu21I YACGTR 1 cut(s) 721
PscI ACATGT 1 cut(s) 388
Psp124BI GAGCTC 1 cut(s) 159
Psp1406I AACGTT 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 476
PsuI RGATCY 2 cut(s) 53, 613
PvuI CGATCG 1 cut(s) 63
RsaI GTAC 3 cut(s) 764, 925, 1060
RsaNI GTAC 3 cut(s) 763, 924, 1059
RseI CAYNNNNRTG 2 cut(s) 554, 719
SacI GAGCTC 1 cut(s) 159
SaqAI TTAA 3 cut(s) 165, 975, 1026
SatI GCNGC 2 cut(s) 111, 430
SchI GAGTC 1 cut(s) 680
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 1 cut(s) 159
SfaNI GCATC 4 cut(s) 272, 580, 750, 780
SmiMI CAYNNNNRTG 2 cut(s) 554, 719
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
SphI GCATGC 1 cut(s) 935
Sse9I AATT 5 cut(s) 448, 694, 755, 766, 937
SsiI CCGC 1 cut(s) 593
SspMI CTAG 2 cut(s) 101, 560
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 2 cut(s) 283, 874
TaiI ACGT 2 cut(s) 299, 723
TaqI TCGA 9 cut(s) 159, 192, 233, 277, 333, 540, 610, 664, 744
TasI AATT 5 cut(s) 448, 694, 755, 766, 937
TatI WGTACW 1 cut(s) 1058
TfiI GAWTC 7 cut(s) 274, 410, 537, 666, 711, 849, 861
Tru1I TTAA 3 cut(s) 165, 975, 1026
Tru9I TTAA 3 cut(s) 165, 975, 1026
TseI GCWGC 2 cut(s) 110, 429
TspDTI ATGAA 4 cut(s) 17, 137, 568, 956
TspGWI ACGGA 2 cut(s) 602, 720
XapI RAATTY 1 cut(s) 755
XceI RCATGY 3 cut(s) 392, 660, 935
XspI CTAG 2 cut(s) 101, 560
Zsp2I ATGCAT 3 cut(s) 265, 795, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.