Rh7AG005300

At4g15970-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0006034
Physical Location & Seq
Reverse (-)
363753 .. 366186
2434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG005300.1

Sequence Viewer

Length: 1203 bp
ATGAGCAGTAAATCATTATCACCAGTAGCAGCACCATTATCTGTGACAGTTATTGGGAATAACAGTACTGGTGTTATGGAGAATAACAAAACAGCAGCAACACCAAAGGCTGGTGGTGTTCATCACCATTATCATCATCATCATCATCATCACGGATTGGTCAAGAGGATTCTAAATATTGCTCTGGTGTGTGTGGCTGTTACTCTGGCTTCCCTTCTCTTCTACATCGCTGTCTTCCCCGGCGGCGGACCTATTTATGATCCTTTGTTCTCAGCTAAATCTCAGGATCCCTTGGATGCAGTTCTGAGAAATGCATCCATGAAGGACAAGACCATAATCGTCACAACACTGAATGATGCGTGGGCAGAACCCAACTCAATATTCGATCTGTTTCTCGAGAGTTTTCGGATCGGAAACAACACGAATCGGCTGCTGAAGCATCTGGTGGTGATCTGCTTGGACCAAAAGGCATACTCTCGTTGCTTGGCTCTTCACCCTCACTGCTACCAACTCTACACTCAAGGTGCCAACTTTACCAGCGAGGCAGCTTTCATGTCCTCCGATTACTTGCACATGATGTGGAGAAGAATCCAGTTTTTGACTTCTATTCTCGAAAAAGGATACAGCTTTGTCTTTACGGATACTGACATTATGTGGCTTAGAGACCCATTCCCACAATTCTTCCCAGATGCAGACTTCCAAATTGCATGTGACTACTTCCGAGGCGATTCTTACGATGTGAACAACCTTCCGAACGGAGGATTTACCTATGTAGTCTCTAATAAACGGACCACCCAATTCTACAACTTTTGGTACTTCTCAAGGCAGACGTATCCGAATAATCACGACCAGGACGTGCTCAACAAGATCAAATCTGATCCGTTCATCACCAGCATCGGATTGAAAATGAGATTCTTGGACACCAAATACTTTGGCGGCTTCTGTCAGCCCAGTAAAGATTTAAACCTGGTTTGCACAATGCACGCTAATTGCTGTGTTGGTCTCGATAACAAAGTCAATGACCTCAAAATTCTGCTTCAAGATTGGAGAAATTACGTGGCATTGCCTCCTTCTCCTTCTTCATCTTCTTCCGGTCCTACTTCTAATACCACCACGCCTCCAACAACTATGCCCTCATGGACCGTTCCACAGAACTGCAGTACTTCCTTCCAACGCCAACGCCACGGCCGGCACTTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

400

Amino Acids

45.17

Weight (kDa)

8.59

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 144 - 342 4.6e-69 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 524
AccB7I CCANNNNNTGG 1 cut(s) 110
AciI CCGC 3 cut(s) 243, 246, 936
AclWI GGATC 5 cut(s) 254, 281, 294, 416, 872
AcoI YGGCCR 1 cut(s) 1186
AcsI RAATTY 1 cut(s) 1029
AcuI CTGAAG 1 cut(s) 455
AfaI GTAC 3 cut(s) 67, 815, 1162
AfiI CCNNNNNNNGG 3 cut(s) 110, 245, 758
AgsI TTSAA 2 cut(s) 904, 1040
AjiI CACGTC 1 cut(s) 856
AjnI CCWGG 2 cut(s) 849, 966
AjuI GAANNNNNNNTTGG 2 cut(s) 365, 397
AluBI AGCT 3 cut(s) 275, 548, 627
AluI AGCT 3 cut(s) 275, 548, 627
Alw21I GWGCWC 1 cut(s) 861
Alw26I GTCTC 3 cut(s) 657, 781, 1007
AlwI GGATC 5 cut(s) 254, 281, 294, 416, 872
Ama87I CYCGRG 1 cut(s) 395
AoxI GGCC 1 cut(s) 1186
ApeKI GCWGC 4 cut(s) 29, 95, 430, 545
ApoI RAATTY 1 cut(s) 1029
AspS9I GGNCC 5 cut(s) 248, 460, 789, 1094, 1140
AsuC2I CCSGG 1 cut(s) 240
AsuHPI GGTGA 5 cut(s) 12, 116, 460, 485, 880
AvaI CYCGRG 1 cut(s) 395
AvaII GGWCC 5 cut(s) 248, 460, 789, 1094, 1140
BamHI GGATCC 1 cut(s) 286
BanI GGYRCC 1 cut(s) 524
BbsI GAAGAC 1 cut(s) 226
Bbv12I GWGCWC 1 cut(s) 861
BbvI GCAGC 4 cut(s) 41, 107, 417, 557
BceAI ACGGC 1 cut(s) 1201
BcgI CGANNNNNNTGC 2 cut(s) 412, 446
BciT130I CCWGG 2 cut(s) 851, 968
BciVI GTATCC 3 cut(s) 614, 634, 843
BcnI CCSGG 1 cut(s) 240
BcoDI GTCTC 3 cut(s) 657, 781, 1007
BfmI CTRYAG 1 cut(s) 1156
BfuI GTATCC 3 cut(s) 614, 634, 843
BisI GCNGC 6 cut(s) 30, 96, 244, 431, 546, 937
BlsI GCNGC 6 cut(s) 31, 97, 245, 432, 547, 938
BmcAI AGTACT 2 cut(s) 67, 1162
Bme1390I CCNGG 3 cut(s) 240, 851, 968
Bme18I GGWCC 5 cut(s) 248, 460, 789, 1094, 1140
BmeT110I CYCGRG 1 cut(s) 395
BmgBI CACGTC 1 cut(s) 856
BmgT120I GGNCC 5 cut(s) 248, 460, 789, 1094, 1140
BmiI GGNNCC 2 cut(s) 288, 526
BmrFI CCNGG 3 cut(s) 240, 851, 968
BmrI ACTGGG 1 cut(s) 945
BmsI GCATC 6 cut(s) 286, 323, 346, 448, 679, 903
BmuI ACTGGG 1 cut(s) 945
BpiI GAAGAC 1 cut(s) 226
BpuEI CTTGAG 2 cut(s) 504, 805
BpuMI CCSGG 1 cut(s) 240
BsaAI YACGTR 1 cut(s) 1057
BsaI GGTCTC 2 cut(s) 657, 1007
BsaJI CCNNGG 4 cut(s) 238, 291, 721, 1183
BsaWI WCCGGW 1 cut(s) 1091
BsaXI ACNNNNNCTCC 2 cut(s) 1102, 1132
Bsc4I CCNNNNNNNGG 3 cut(s) 110, 245, 758
Bse118I RCCGGY 1 cut(s) 1188
Bse1I ACTGG 4 cut(s) 23, 73, 592, 951
Bse3DI GCAATG 1 cut(s) 1061
BseBI CCWGG 2 cut(s) 851, 968
BseDI CCNNGG 4 cut(s) 238, 291, 721, 1183
BseGI GGATG 2 cut(s) 301, 314
BseLI CCNNNNNNNGG 3 cut(s) 110, 245, 758
BseMI GCAATG 1 cut(s) 1061
BseMII CTCAG 3 cut(s) 285, 296, 296
BseNI ACTGG 4 cut(s) 23, 73, 592, 951
BseX3I CGGCCG 1 cut(s) 1186
BseXI GCAGC 4 cut(s) 41, 107, 417, 557
Bsh1285I CGRYCG 1 cut(s) 1189
BshFI GGCC 1 cut(s) 1188
BshNI GGYRCC 1 cut(s) 524
BsiEI CGRYCG 1 cut(s) 1189
BsiHKAI GWGCWC 1 cut(s) 861
BsiHKCI CYCGRG 1 cut(s) 395
BsiSI CCGG 3 cut(s) 240, 1092, 1189
BslI CCNNNNNNNGG 3 cut(s) 110, 245, 758
BsmAI GTCTC 3 cut(s) 657, 781, 1007
BsnI GGCC 1 cut(s) 1188
Bso31I GGTCTC 2 cut(s) 657, 1007
BsoBI CYCGRG 1 cut(s) 395
Bsp1286I GDGCHC 1 cut(s) 861
Bsp143I GATC 7 cut(s) 259, 286, 385, 408, 450, 867, 877
BspACI CCGC 3 cut(s) 243, 246, 936
BspANI GGCC 1 cut(s) 1188
BspCNI CTCAG 3 cut(s) 284, 295, 297
BspLI GGNNCC 2 cut(s) 288, 526
BspMAI CTGCAG 1 cut(s) 1160
BspPI GGATC 5 cut(s) 254, 281, 294, 416, 872
BspQI GCTCTTC 1 cut(s) 495
BspT107I GGYRCC 1 cut(s) 524
BspTNI GGTCTC 2 cut(s) 657, 1007
BsrDI GCAATG 1 cut(s) 1061
BsrFI RCCGGY 1 cut(s) 1188
BsrI ACTGG 4 cut(s) 23, 73, 592, 951
BssAI RCCGGY 1 cut(s) 1188
BssECI CCNNGG 4 cut(s) 238, 291, 721, 1183
BssMI GATC 7 cut(s) 259, 286, 385, 408, 450, 867, 877
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 2 cut(s) 851, 968
Bst4CI ACNGT 3 cut(s) 49, 65, 1144
Bst6I CTCTTC 2 cut(s) 224, 495
BstBAI YACGTR 1 cut(s) 1057
BstC8I GCNNGC 2 cut(s) 984, 1190
BstDEI CTNAG 4 cut(s) 271, 282, 305, 659
BstDSI CCRYGG 1 cut(s) 1183
BstF5I GGATG 2 cut(s) 301, 314
BstKTI GATC 7 cut(s) 262, 289, 388, 411, 453, 870, 880
BstMAI GTCTC 3 cut(s) 657, 781, 1007
BstMBI GATC 7 cut(s) 259, 286, 385, 408, 450, 867, 877
BstMCI CGRYCG 1 cut(s) 1189
BstMWI GCNNNNNNNGC 1 cut(s) 436
BstNI CCWGG 2 cut(s) 851, 968
BstNSI RCATGY 1 cut(s) 711
BstSCI CCNGG 3 cut(s) 238, 849, 966
BstSFI CTRYAG 1 cut(s) 1156
BstV1I GCAGC 4 cut(s) 41, 107, 417, 557
BstV2I GAAGAC 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BstZI CGGCCG 1 cut(s) 1186
BsuI GTATCC 3 cut(s) 614, 634, 843
BsuRI GGCC 1 cut(s) 1188
BtgI CCRYGG 1 cut(s) 1183
BtgZI GCGATG 1 cut(s) 211
BtrI CACGTC 1 cut(s) 856
BtsCI GGATG 2 cut(s) 301, 314
BtsI GCAGTG 1 cut(s) 499
BtsIMutI CAGTG 2 cut(s) 347, 499
Cac8I GCNNGC 2 cut(s) 984, 1190
Cfr10I RCCGGY 1 cut(s) 1188
Cfr13I GGNCC 5 cut(s) 248, 460, 789, 1094, 1140
CsiI ACCWGGT 1 cut(s) 966
Csp6I GTAC 3 cut(s) 66, 814, 1161
CviAII CATG 5 cut(s) 319, 553, 574, 708, 1137
CviQI GTAC 3 cut(s) 66, 814, 1161
DdeI CTNAG 4 cut(s) 271, 282, 305, 659
DpnI GATC 7 cut(s) 261, 288, 387, 410, 452, 869, 879
DpnII GATC 7 cut(s) 259, 286, 385, 408, 450, 867, 877
DraI TTTAAA 1 cut(s) 963
EaeI YGGCCR 1 cut(s) 1186
EagI CGGCCG 1 cut(s) 1186
Eam1104I CTCTTC 2 cut(s) 224, 495
EarI CTCTTC 2 cut(s) 224, 495
EciI GGCGGA 1 cut(s) 261
EclXI CGGCCG 1 cut(s) 1186
Eco130I CCWWGG 1 cut(s) 291
Eco31I GGTCTC 2 cut(s) 657, 1007
Eco47I GGWCC 5 cut(s) 248, 460, 789, 1094, 1140
Eco52I CGGCCG 1 cut(s) 1186
Eco57I CTGAAG 1 cut(s) 455
Eco88I CYCGRG 1 cut(s) 395
EcoRII CCWGG 2 cut(s) 849, 966
EcoT14I CCWWGG 1 cut(s) 291
EcoT22I ATGCAT 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 5 cut(s) 322, 556, 577, 711, 1140
FatI CATG 5 cut(s) 318, 552, 573, 707, 1136
Fnu4HI GCNGC 6 cut(s) 30, 96, 244, 431, 546, 937
FokI GGATG 2 cut(s) 301, 308
Fsp4HI GCNGC 6 cut(s) 30, 96, 244, 431, 546, 937
GluI GCNGC 6 cut(s) 30, 96, 244, 431, 546, 937
HaeIII GGCC 1 cut(s) 1188
HapII CCGG 3 cut(s) 240, 1092, 1189
Hin1II CATG 5 cut(s) 322, 556, 577, 711, 1140
HinfI GANTC 5 cut(s) 169, 424, 588, 728, 912
HpaII CCGG 3 cut(s) 240, 1092, 1189
HphI GGTGA 5 cut(s) 12, 116, 460, 485, 880
Hpy166II GTNNAC 1 cut(s) 742
Hpy188I TCNGA 9 cut(s) 306, 408, 413, 562, 722, 753, 837, 877, 899
Hpy188III TCNNGA 8 cut(s) 163, 284, 395, 397, 611, 845, 1004, 1040
Hpy8I GTNNAC 1 cut(s) 742
HpyAV CCTTC 6 cut(s) 224, 316, 758, 1080, 1086, 1177
HpyCH4III ACNGT 3 cut(s) 49, 65, 1144
HpyCH4IV ACGT 3 cut(s) 830, 855, 1056
HpyCH4V TGCA 8 cut(s) 299, 314, 571, 692, 707, 975, 982, 1158
HpyF10VI GCNNNNNNNGC 1 cut(s) 436
HpyF3I CTNAG 4 cut(s) 271, 282, 305, 659
HpySE526I ACGT 3 cut(s) 830, 855, 1056
Hsp92II CATG 5 cut(s) 322, 556, 577, 711, 1140
KroI GCCGGC 1 cut(s) 1188
KroNI GCCGGC 1 cut(s) 1190
Kzo9I GATC 7 cut(s) 259, 286, 385, 408, 450, 867, 877
LguI GCTCTTC 1 cut(s) 495
Lsp1109I GCAGC 4 cut(s) 41, 107, 417, 557
LweI GCATC 6 cut(s) 286, 323, 346, 448, 679, 903
MabI ACCWGGT 1 cut(s) 966
MaeII ACGT 3 cut(s) 830, 855, 1056
MaeIII GTNAC 4 cut(s) 43, 199, 340, 710
MalI GATC 7 cut(s) 261, 288, 387, 410, 452, 869, 879
MboI GATC 7 cut(s) 259, 286, 385, 408, 450, 867, 877
MboII GAAGA 8 cut(s) 211, 226, 482, 597, 673, 1071, 1077, 1080
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 1 cut(s) 861
MluCI AATT 6 cut(s) 677, 702, 797, 988, 1029, 1051
MmeI TCCRAC 2 cut(s) 1145, 1195
Mph1103I ATGCAT 1 cut(s) 316
MroNI GCCGGC 1 cut(s) 1188
MseI TTAA 1 cut(s) 962
MspI CCGG 3 cut(s) 240, 1092, 1189
MspR9I CCNGG 3 cut(s) 240, 851, 968
MvaI CCWGG 2 cut(s) 851, 968
MwoI GCNNNNNNNGC 1 cut(s) 436
NaeI GCCGGC 1 cut(s) 1190
NciI CCSGG 1 cut(s) 240
NdeII GATC 7 cut(s) 259, 286, 385, 408, 450, 867, 877
NgoMIV GCCGGC 1 cut(s) 1188
NlaIII CATG 5 cut(s) 322, 556, 577, 711, 1140
NlaIV GGNNCC 2 cut(s) 288, 526
NmuCI GTSAC 3 cut(s) 43, 340, 710
NsiI ATGCAT 1 cut(s) 316
NspI RCATGY 1 cut(s) 711
PaeR7I CTCGAG 1 cut(s) 395
PciSI GCTCTTC 1 cut(s) 495
PcsI WCGNNNNNNNCGW 1 cut(s) 852
PdiI GCCGGC 1 cut(s) 1190
PfeI GAWTC 5 cut(s) 169, 424, 588, 728, 912
PflMI CCANNNNNTGG 1 cut(s) 110
PkrI GCNGC 6 cut(s) 31, 97, 245, 432, 547, 938
Ppu21I YACGTR 1 cut(s) 1057
Psp6I CCWGG 2 cut(s) 849, 966
PspGI CCWGG 2 cut(s) 849, 966
PspN4I GGNNCC 2 cut(s) 288, 526
PspPI GGNCC 5 cut(s) 248, 460, 789, 1094, 1140
PstI CTGCAG 1 cut(s) 1160
PsuI RGATCY 1 cut(s) 286
RsaI GTAC 3 cut(s) 67, 815, 1162
RsaNI GTAC 3 cut(s) 66, 814, 1161
SapI GCTCTTC 1 cut(s) 495
SaqAI TTAA 1 cut(s) 962
SatI GCNGC 6 cut(s) 30, 96, 244, 431, 546, 937
Sau3AI GATC 7 cut(s) 259, 286, 385, 408, 450, 867, 877
Sau96I GGNCC 5 cut(s) 248, 460, 789, 1094, 1140
ScaI AGTACT 2 cut(s) 67, 1162
ScrFI CCNGG 3 cut(s) 240, 851, 968
SduI GDGCHC 1 cut(s) 861
SexAI ACCWGGT 1 cut(s) 966
SfaNI GCATC 6 cut(s) 286, 323, 346, 448, 679, 903
SfcI CTRYAG 1 cut(s) 1156
Sfr274I CTCGAG 1 cut(s) 395
SinI GGWCC 5 cut(s) 248, 460, 789, 1094, 1140
SlaI CTCGAG 1 cut(s) 395
SmlI CTYRAG 3 cut(s) 395, 519, 820
SmoI CTYRAG 3 cut(s) 395, 519, 820
Sse9I AATT 6 cut(s) 677, 702, 797, 988, 1029, 1051
SsiI CCGC 3 cut(s) 243, 246, 936
SspI AATATT 2 cut(s) 178, 381
StyD4I CCNGG 3 cut(s) 238, 849, 966
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 3 cut(s) 49, 65, 1144
TaiI ACGT 3 cut(s) 833, 858, 1059
TaqI TCGA 4 cut(s) 384, 396, 612, 1005
TasI AATT 6 cut(s) 677, 702, 797, 988, 1029, 1051
TatI WGTACW 2 cut(s) 65, 1160
TauI GCSGC 2 cut(s) 246, 939
TfiI GAWTC 5 cut(s) 169, 424, 588, 728, 912
Tru1I TTAA 1 cut(s) 962
Tru9I TTAA 1 cut(s) 962
TscAI CASTG 2 cut(s) 354, 506
TseFI GTSAC 3 cut(s) 43, 340, 710
TseI GCWGC 4 cut(s) 29, 95, 430, 545
Tsp45I GTSAC 3 cut(s) 43, 340, 710
TspDTI ATGAA 5 cut(s) 110, 335, 541, 874, 1071
TspGWI ACGGA 5 cut(s) 168, 653, 771, 802, 870
TspRI CASTG 2 cut(s) 354, 506
Van91I CCANNNNNTGG 1 cut(s) 110
VpaK11BI GGWCC 5 cut(s) 248, 460, 789, 1094, 1140
XapI RAATTY 1 cut(s) 1029
XceI RCATGY 1 cut(s) 711
XhoI CTCGAG 1 cut(s) 395
ZrmI AGTACT 2 cut(s) 67, 1162
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.