Prupe.5G241800_v2.0.a1

At4g15970-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0006034
Physical Location & Seq
Forward (+)
18204020 .. 18206357
2338 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G241800.1

Sequence Viewer

Length: 1194 bp
ATGAATAAGTCACCGGTAGGCGGCGAAGGAGGAGGAGGAGTCTTCCATGACCCTGAAGTTGACGGCAACGGCAAGGCCAATACTATTATCAATAATACAACTAGCAGTATTGATCAGAATATGAAACCAATAATATCCAGCGGCGGGATTGGGAGTGGGAGTGGATTGGTGACGATGAAGAAGATGAATATTGTACGGATGACACTGCTGTTTGTGGGGATGACTGTGGCTTGCTTTATTTTCTACAATTCTGTCTTTCCTTCAAGATTTCTCTCCATATCCTTATATGACTACACCGGAACCACATATTCTCAGGGCAACGACCATCTATTGGATGCGGTTCTGAAAAATGCATCCATGAAGGACAGAACCATTCTGGTAACTACATTAAACGATGCTTGGGCTGAACCCAATTCCATATTTGATCTGTTTCTGGAGAGCTTTCACATCGGAAGCAACACCAAATGGCTGCTCAACCATCTGGTAGTGATCTGCTTGGACCAGAAAGCATATGCTCGTTGCTTAGCCTTACACCCTCACTGTTACGAGCTCTACACTCAAGGTGCCAACTTCACCAGCGAGGCATCTTTTATGTCTTCCGACTACTTGCAAATGATGTGGAGACGGATCCAATTTATGTCCAAAATTCTCGAGAGAGGCTACAACTTTGTCTTTACGGACACTGATATAATGTGGCTCCGGAATCCCTTCCCACGATTCTATCCGGATGCGGATTTTCAAATCGCATGTGATTTCTTCCTGGGTGATTCTTATAGCATAAGGAATTTGCCCAACGGAGGATTCACCTATGTCAAGTCCAGTAAGCGCACAATTTGGTTCTATAAGTTTTGGTACTTCTCCAGAAAGGCCTATCCAAAGATGCATGACCAGGACGTACTAAACAAGATCAAATCCGATCGCTTGATTTCCGATTCTGGATTGAAAATGAGGTTCTTGGACACCCAATACTTCGGTGGCTTCTGTCAGCCCAGTAAGGATTTTAACAAAGTTTGTACGATGCATGCGAATTGCTGTGTTGGTCTCGATAACAAAGTCAATGATCTTAGAATTTTGCTTCAAGTTTGGAGAAAGTTCATGGCATTGCCTCCCAACGCCGCCACCACGGCACGGACTTCATGGACCGTTCCACGAAATTGCAGTACTTCCTTCCAACGCCTTGGAAAGCACTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

398

Amino Acids

45.21

Weight (kDa)

9.03

Isoelectric Point (pI)

40.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 563
AccB7I CCANNNNNTGG 1 cut(s) 331
AccIII TCCGGA 2 cut(s) 699, 724
AciI CCGC 6 cut(s) 21, 141, 144, 338, 731, 1116
AclWI GGATC 2 cut(s) 622, 635
AcsI RAATTY 3 cut(s) 645, 784, 1068
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 5 cut(s) 195, 854, 897, 1015, 1162
AfiI CCNNNNNNNGG 5 cut(s) 20, 144, 331, 797, 1128
AgeI ACCGGT 1 cut(s) 13
AgsI TTSAA 4 cut(s) 264, 740, 943, 1079
AjnI CCWGG 2 cut(s) 759, 888
AjuI GAANNNNNNNTTGG 2 cut(s) 785, 817
AluBI AGCT 2 cut(s) 441, 550
AluI AGCT 2 cut(s) 441, 550
Alw21I GWGCWC 1 cut(s) 552
Alw26I GTCTC 2 cut(s) 616, 1046
AlwI GGATC 2 cut(s) 622, 635
Ama87I CYCGRG 1 cut(s) 650
Aor13HI TCCGGA 2 cut(s) 699, 724
AoxI GGCC 2 cut(s) 75, 867
ApeKI GCWGC 1 cut(s) 469
ApoI RAATTY 3 cut(s) 645, 784, 1068
AsiGI ACCGGT 1 cut(s) 13
Asp700I GAANNNNTTC 1 cut(s) 707
AspLEI GCGC 1 cut(s) 828
AspS9I GGNCC 2 cut(s) 499, 1140
AsuHPI GGTGA 5 cut(s) 3, 181, 565, 776, 796
AvaI CYCGRG 1 cut(s) 650
AvaII GGWCC 2 cut(s) 499, 1140
BamHI GGATCC 1 cut(s) 627
BanI GGYRCC 1 cut(s) 563
BanII GRGCYC 1 cut(s) 552
BauI CACGAG 1 cut(s) 1189
BbsI GAAGAC 2 cut(s) 34, 588
Bbv12I GWGCWC 1 cut(s) 552
BbvI GCAGC 1 cut(s) 456
BccI CCATC 2 cut(s) 333, 486
BceAI ACGGC 3 cut(s) 79, 85, 1140
BciT130I CCWGG 2 cut(s) 761, 890
BclI TGATCA 1 cut(s) 112
BcoDI GTCTC 2 cut(s) 616, 1046
BfaI CTAG 1 cut(s) 102
BglI GCCNNNNNGGC 1 cut(s) 1124
BisI GCNGC 4 cut(s) 22, 142, 470, 1116
BlpI GCTNAGC 1 cut(s) 523
BlsI GCNGC 4 cut(s) 23, 143, 471, 1117
BmcAI AGTACT 1 cut(s) 1162
Bme1390I CCNGG 2 cut(s) 761, 890
Bme18I GGWCC 2 cut(s) 499, 1140
BmeT110I CYCGRG 1 cut(s) 650
BmgT120I GGNCC 2 cut(s) 499, 1140
BmiI GGNNCC 4 cut(s) 301, 565, 629, 698
BmrFI CCNGG 2 cut(s) 761, 890
BmrI ACTGGG 1 cut(s) 984
BmsI GCATC 7 cut(s) 325, 362, 385, 593, 718, 870, 1008
BmuI ACTGGG 1 cut(s) 984
BpiI GAAGAC 2 cut(s) 34, 588
BpmI CTGGAG 2 cut(s) 455, 844
Bpu1102I GCTNAGC 1 cut(s) 523
BpuEI CTTGAG 1 cut(s) 543
BsaI GGTCTC 1 cut(s) 1046
BsaJI CCNNGG 3 cut(s) 760, 1122, 1177
BsaWI WCCGGW 4 cut(s) 13, 296, 699, 724
BsaXI ACNNNNNCTCC 4 cut(s) 24, 54, 145, 175
Bsc4I CCNNNNNNNGG 5 cut(s) 20, 144, 331, 797, 1128
Bse118I RCCGGY 1 cut(s) 13
Bse1I ACTGG 2 cut(s) 819, 990
Bse3DI GCAATG 1 cut(s) 1100
BseAI TCCGGA 2 cut(s) 699, 724
BseBI CCWGG 2 cut(s) 761, 890
BseDI CCNNGG 3 cut(s) 760, 1122, 1177
BseGI GGATG 5 cut(s) 204, 225, 340, 353, 733
BseLI CCNNNNNNNGG 5 cut(s) 20, 144, 331, 797, 1128
BseMI GCAATG 1 cut(s) 1100
BseMII CTCAG 1 cut(s) 326
BseNI ACTGG 2 cut(s) 819, 990
BseRI GAGGAG 3 cut(s) 45, 48, 51
BseXI GCAGC 1 cut(s) 456
Bsh1285I CGRYCG 1 cut(s) 919
BshFI GGCC 2 cut(s) 77, 869
BshNI GGYRCC 1 cut(s) 563
BshTI ACCGGT 1 cut(s) 13
BsiEI CGRYCG 1 cut(s) 919
BsiHKAI GWGCWC 1 cut(s) 552
BsiHKCI CYCGRG 1 cut(s) 650
BsiSI CCGG 4 cut(s) 14, 297, 700, 725
BslI CCNNNNNNNGG 5 cut(s) 20, 144, 331, 797, 1128
BsmAI GTCTC 2 cut(s) 616, 1046
BsmBI CGTCTC 1 cut(s) 616
BsnI GGCC 2 cut(s) 77, 869
Bso31I GGTCTC 1 cut(s) 1046
BsoBI CYCGRG 1 cut(s) 650
Bsp1286I GDGCHC 1 cut(s) 552
Bsp13I TCCGGA 2 cut(s) 699, 724
Bsp143I GATC 7 cut(s) 112, 424, 489, 627, 906, 916, 1060
Bsp1720I GCTNAGC 1 cut(s) 523
BspACI CCGC 6 cut(s) 21, 141, 144, 338, 731, 1116
BspANI GGCC 2 cut(s) 77, 869
BspCNI CTCAG 1 cut(s) 325
BspEI TCCGGA 2 cut(s) 699, 724
BspLI GGNNCC 4 cut(s) 301, 565, 629, 698
BspPI GGATC 2 cut(s) 622, 635
BspT107I GGYRCC 1 cut(s) 563
BspTNI GGTCTC 1 cut(s) 1046
BsrDI GCAATG 1 cut(s) 1100
BsrFI RCCGGY 1 cut(s) 13
BsrI ACTGG 2 cut(s) 819, 990
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 3 cut(s) 760, 1122, 1177
BssMI GATC 7 cut(s) 112, 424, 489, 627, 906, 916, 1060
BssSI CACGAG 1 cut(s) 1189
BssT1I CCWWGG 1 cut(s) 1177
Bst2BI CACGAG 1 cut(s) 1189
Bst2UI CCWGG 2 cut(s) 761, 890
Bst4CI ACNGT 3 cut(s) 226, 542, 1144
BstC8I GCNNGC 2 cut(s) 232, 1023
BstDEI CTNAG 3 cut(s) 312, 523, 1064
BstDSI CCRYGG 1 cut(s) 1122
BstF5I GGATG 5 cut(s) 204, 225, 340, 353, 733
BstHHI GCGC 1 cut(s) 828
BstKTI GATC 7 cut(s) 115, 427, 492, 630, 909, 919, 1063
BstMAI GTCTC 2 cut(s) 616, 1046
BstMBI GATC 7 cut(s) 112, 424, 489, 627, 906, 916, 1060
BstMCI CGRYCG 1 cut(s) 919
BstMWI GCNNNNNNNGC 1 cut(s) 1124
BstNI CCWGG 2 cut(s) 761, 890
BstNSI RCATGY 2 cut(s) 750, 1025
BstSCI CCNGG 2 cut(s) 759, 888
BstV1I GCAGC 1 cut(s) 456
BstV2I GAAGAC 2 cut(s) 34, 588
BstX2I RGATCY 1 cut(s) 627
BstXI CCANNNNNNTGG 1 cut(s) 1178
BstYI RGATCY 1 cut(s) 627
BsuRI GGCC 2 cut(s) 77, 869
BtgI CCRYGG 1 cut(s) 1122
BtsCI GGATG 5 cut(s) 204, 225, 340, 353, 733
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 3 cut(s) 203, 538, 681
Cac8I GCNNGC 2 cut(s) 232, 1023
CfoI GCGC 1 cut(s) 828
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 2 cut(s) 499, 1140
Csp6I GTAC 5 cut(s) 194, 853, 896, 1014, 1161
CspAI ACCGGT 1 cut(s) 13
CspCI CAANNNNNGTGG 2 cut(s) 599, 634
CviAII CATG 7 cut(s) 47, 358, 747, 884, 1022, 1096, 1137
CviQI GTAC 5 cut(s) 194, 853, 896, 1014, 1161
DdeI CTNAG 3 cut(s) 312, 523, 1064
DpnI GATC 7 cut(s) 114, 426, 491, 629, 908, 918, 1062
DpnII GATC 7 cut(s) 112, 424, 489, 627, 906, 916, 1060
Ecl136II GAGCTC 1 cut(s) 550
Eco130I CCWWGG 1 cut(s) 1177
Eco147I AGGCCT 1 cut(s) 869
Eco24I GRGCYC 1 cut(s) 552
Eco31I GGTCTC 1 cut(s) 1046
Eco47I GGWCC 2 cut(s) 499, 1140
Eco53kI GAGCTC 1 cut(s) 550
Eco57I CTGAAG 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 650
EcoICRI GAGCTC 1 cut(s) 550
EcoRII CCWGG 2 cut(s) 759, 888
EcoT14I CCWWGG 1 cut(s) 1177
EcoT22I ATGCAT 3 cut(s) 355, 885, 1023
EcoT38I GRGCYC 1 cut(s) 552
ErhI CCWWGG 1 cut(s) 1177
Esp3I CGTCTC 1 cut(s) 616
FaeI CATG 7 cut(s) 50, 361, 750, 887, 1025, 1099, 1140
FatI CATG 7 cut(s) 46, 357, 746, 883, 1021, 1095, 1136
FauI CCCGC 1 cut(s) 137
FauNDI CATATG 1 cut(s) 511
FbaI TGATCA 1 cut(s) 112
Fnu4HI GCNGC 4 cut(s) 22, 142, 470, 1116
FokI GGATG 5 cut(s) 211, 232, 340, 347, 740
FriOI GRGCYC 1 cut(s) 552
Fsp4HI GCNGC 4 cut(s) 22, 142, 470, 1116
FspBI CTAG 1 cut(s) 102
GlaI GCGC 1 cut(s) 827
GluI GCNGC 4 cut(s) 22, 142, 470, 1116
GsuI CTGGAG 2 cut(s) 455, 844
HaeIII GGCC 2 cut(s) 77, 869
HapII CCGG 4 cut(s) 14, 297, 700, 725
HhaI GCGC 1 cut(s) 828
Hin1II CATG 7 cut(s) 50, 361, 750, 887, 1025, 1099, 1140
Hin6I GCGC 1 cut(s) 826
HinP1I GCGC 1 cut(s) 826
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 6 cut(s) 39, 703, 717, 767, 801, 932
HpaII CCGG 4 cut(s) 14, 297, 700, 725
HphI GGTGA 5 cut(s) 3, 181, 565, 776, 796
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 6 cut(s) 117, 345, 452, 601, 916, 931
Hpy8I GTNNAC 1 cut(s) 61
HpyAV CCTTC 5 cut(s) 20, 270, 355, 718, 1177
HpyCH4III ACNGT 3 cut(s) 226, 542, 1144
HpyCH4IV ACGT 1 cut(s) 894
HpyCH4V TGCA 5 cut(s) 353, 610, 883, 1021, 1158
HpyF10VI GCNNNNNNNGC 1 cut(s) 1124
HpyF3I CTNAG 3 cut(s) 312, 523, 1064
HpySE526I ACGT 1 cut(s) 894
Hsp92II CATG 7 cut(s) 50, 361, 750, 887, 1025, 1099, 1140
HspAI GCGC 1 cut(s) 826
Kpn2I TCCGGA 2 cut(s) 699, 724
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 7 cut(s) 112, 424, 489, 627, 906, 916, 1060
LmnI GCTCC 1 cut(s) 702
Lsp1109I GCAGC 1 cut(s) 456
LweI GCATC 7 cut(s) 325, 362, 385, 593, 718, 870, 1008
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 894
MaeIII GTNAC 4 cut(s) 9, 169, 379, 542
MalI GATC 7 cut(s) 114, 426, 491, 629, 908, 918, 1062
MboI GATC 7 cut(s) 112, 424, 489, 627, 906, 916, 1060
MboII GAAGA 5 cut(s) 34, 190, 193, 588, 748
MflI RGATCY 1 cut(s) 627
MhlI GDGCHC 1 cut(s) 552
MluCI AATT 9 cut(s) 247, 412, 632, 645, 784, 831, 1027, 1068, 1153
MlyI GAGTC 1 cut(s) 48
MmeI TCCRAC 1 cut(s) 624
MnlI CCTC 9 cut(s) 23, 26, 29, 546, 574, 650, 791, 942, 1116
Mph1103I ATGCAT 3 cut(s) 355, 885, 1023
MroI TCCGGA 2 cut(s) 699, 724
MroXI GAANNNNTTC 1 cut(s) 707
MseI TTAA 2 cut(s) 389, 1002
MspA1I CMGCKG 1 cut(s) 141
MspI CCGG 4 cut(s) 14, 297, 700, 725
MspR9I CCNGG 2 cut(s) 761, 890
MvaI CCWGG 2 cut(s) 761, 890
MwoI GCNNNNNNNGC 1 cut(s) 1124
NdeI CATATG 1 cut(s) 511
NdeII GATC 7 cut(s) 112, 424, 489, 627, 906, 916, 1060
NlaIII CATG 7 cut(s) 50, 361, 750, 887, 1025, 1099, 1140
NlaIV GGNNCC 4 cut(s) 301, 565, 629, 698
NmuCI GTSAC 2 cut(s) 9, 169
NsiI ATGCAT 3 cut(s) 355, 885, 1023
NspI RCATGY 2 cut(s) 750, 1025
PaeI GCATGC 1 cut(s) 1025
PaeR7I CTCGAG 1 cut(s) 650
PceI AGGCCT 1 cut(s) 869
PcsI WCGNNNNNNNCGW 1 cut(s) 1022
PdmI GAANNNNTTC 1 cut(s) 707
PfeI GAWTC 5 cut(s) 703, 717, 767, 801, 932
PflMI CCANNNNNTGG 1 cut(s) 331
PinAI ACCGGT 1 cut(s) 13
PkrI GCNGC 4 cut(s) 23, 143, 471, 1117
Ple19I CGATCG 1 cut(s) 919
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
Psp124BI GAGCTC 1 cut(s) 552
Psp6I CCWGG 2 cut(s) 759, 888
PspGI CCWGG 2 cut(s) 759, 888
PspN4I GGNNCC 4 cut(s) 301, 565, 629, 698
PspPI GGNCC 2 cut(s) 499, 1140
PsuI RGATCY 1 cut(s) 627
PvuI CGATCG 1 cut(s) 919
RsaI GTAC 5 cut(s) 195, 854, 897, 1015, 1162
RsaNI GTAC 5 cut(s) 194, 853, 896, 1014, 1161
SacI GAGCTC 1 cut(s) 552
SaqAI TTAA 2 cut(s) 389, 1002
SatI GCNGC 4 cut(s) 22, 142, 470, 1116
Sau3AI GATC 7 cut(s) 112, 424, 489, 627, 906, 916, 1060
Sau96I GGNCC 2 cut(s) 499, 1140
ScaI AGTACT 1 cut(s) 1162
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 2 cut(s) 761, 890
SduI GDGCHC 1 cut(s) 552
SetI ASST 6 cut(s) 443, 552, 565, 809, 897, 953
SfaNI GCATC 7 cut(s) 325, 362, 385, 593, 718, 870, 1008
Sfr274I CTCGAG 1 cut(s) 650
SinI GGWCC 2 cut(s) 499, 1140
SlaI CTCGAG 1 cut(s) 650
SmlI CTYRAG 2 cut(s) 558, 650
SmoI CTYRAG 2 cut(s) 558, 650
SphI GCATGC 1 cut(s) 1025
Sse9I AATT 9 cut(s) 247, 412, 632, 645, 784, 831, 1027, 1068, 1153
SseBI AGGCCT 1 cut(s) 869
SsiI CCGC 6 cut(s) 21, 141, 144, 338, 731, 1116
SspI AATATT 1 cut(s) 190
SspMI CTAG 1 cut(s) 102
SstI GAGCTC 1 cut(s) 552
StuI AGGCCT 1 cut(s) 869
StyD4I CCNGG 2 cut(s) 759, 888
StyI CCWWGG 1 cut(s) 1177
TaaI ACNGT 3 cut(s) 226, 542, 1144
TaiI ACGT 1 cut(s) 897
TaqI TCGA 2 cut(s) 651, 1044
TasI AATT 9 cut(s) 247, 412, 632, 645, 784, 831, 1027, 1068, 1153
TatI WGTACW 1 cut(s) 1160
TauI GCSGC 3 cut(s) 24, 144, 1118
TfiI GAWTC 5 cut(s) 703, 717, 767, 801, 932
Tru1I TTAA 2 cut(s) 389, 1002
Tru9I TTAA 2 cut(s) 389, 1002
TscAI CASTG 3 cut(s) 210, 545, 688
TseFI GTSAC 2 cut(s) 9, 169
TseI GCWGC 1 cut(s) 469
Tsp45I GTSAC 2 cut(s) 9, 169
TspDTI ATGAA 7 cut(s) 17, 137, 191, 200, 374, 1084, 1125
TspGWI ACGGA 5 cut(s) 211, 640, 692, 810, 1144
TspRI CASTG 3 cut(s) 210, 545, 688
Van91I CCANNNNNTGG 1 cut(s) 331
VpaK11BI GGWCC 2 cut(s) 499, 1140
XapI RAATTY 3 cut(s) 645, 784, 1068
XceI RCATGY 2 cut(s) 750, 1025
XcmI CCANNNNNNNNNTGG 1 cut(s) 971
XhoI CTCGAG 1 cut(s) 650
XmnI GAANNNNTTC 1 cut(s) 707
XspI CTAG 1 cut(s) 102
ZrmI AGTACT 1 cut(s) 1162
Zsp2I ATGCAT 3 cut(s) 355, 885, 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.