Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019030.1

Orthogroup ID

OG0006034

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2161

Gene Structure 2161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019030.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1022 bp

gcaacaccaaaggctggtggtgttcatcaccattatcatcatcatcatcatcatcacggattggtcaagaggattctaaatattgctctggtgtgtgtggctgttactctggcatcccttctcttctacatcgctgtcttccccggcggcggacctatttatgatcctttgttctcagctaaatctcaggatcccttggatgcagttctgagaaatgcatccatgaaggacaagaccataatcgtcacaacactgaatgatgcgtgggcagaacccaactcaatattcgatctgtttctcgagagttttcggatcggaaacaacacgaatcggctgctgaagcatctggtggtgatctgcttggaccaaaaggcatactctcgttgcttggctcttcaccctcactgctaccaactctacactcaaggtgccaactttaccagcgaggcagctttcatgtcctccgattacttgcacatgatgtggagaagaatccagtttttgacttctattctcgaaaaaggatacagctttgtctttacggatactgacattatgtggcttagagacccattcccacaattcttcccagatgcagacttccaaattgcatgtgactacttccgaggcgattcttacgatgtgaacaaccttccgaacggaggatttacctatgtagtctctaataaacggaccacccaattctacaacttttggtacttctcaaggcaggcgtatccgaataatcacgaccaggacgtgctcaacaagatcaaatctgatccgttcatcaccagcatcggattgaaaatgagattcttggacaccaaatactttggcggcttctgtcagcccagtaaagatttaaacctggtttgcacaatgcacgctaattgctgtgttggtctcgataacaaagtcaatgacctcaaaattctgcttcaagattggagaaattacgtggcattgcctccttctccttcttcatcttcttccggtcctacttctaataccaccacgcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

341

Amino Acids

38.8

Weight (kDa)

7.76

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19975 AT5G44820
fragaria_vesca	FvH4_5g18190 FvH4_5g18190 FvH4_5g18190
malus_domestica	MD06G1237300.v1.1 MD06G1237400.v1.1 MD06G1237600.v1.1 MD14G1244100.v1.1 MD14G1244200.v1.1
prunus_persica	Prupe.5G241800_v2.0.a1
pyrus_communis	pycom06g21290 pycom06g21330 pycom14g20530
rosa_chinensis	RchiOBHm_Chr7g0177411
rosa_laevigata	RLG00000005539
rosa_multiflora	Rmu_sc0005310.1_g000002 Rmu_sc0005545.1_g000003 Rmu_sc0019030.1_g000001 Rmu_sc0019031.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275890
rosa_rugosa	Rorug06G0405600
rosa_samantha	Rh7AG005300 Rh7BG005300 Rh7CG005400 Rh7DG005100
rosa_wichuraiana	Rw7G000440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	428
AccB7I	CCANNNNNTGG	1 cut(s)	14
AciI	CCGC	3 cut(s)	147, 150, 840
AclWI	GGATC	5 cut(s)	158, 185, 198, 320, 776
AcsI	RAATTY	1 cut(s)	933
AcuI	CTGAAG	1 cut(s)	359
AfaI	GTAC	1 cut(s)	719
AfiI	CCNNNNNNNGG	3 cut(s)	14, 149, 662
AgsI	TTSAA	2 cut(s)	808, 944
AjiI	CACGTC	1 cut(s)	760
AjnI	CCWGG	2 cut(s)	753, 870
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	3 cut(s)	179, 452, 531
AluI	AGCT	3 cut(s)	179, 452, 531
Alw21I	GWGCWC	1 cut(s)	765
Alw26I	GTCTC	3 cut(s)	561, 685, 911
AlwI	GGATC	5 cut(s)	158, 185, 198, 320, 776
Ama87I	CYCGRG	1 cut(s)	299
ApeKI	GCWGC	2 cut(s)	334, 449
ApoI	RAATTY	1 cut(s)	933
AspS9I	GGNCC	4 cut(s)	152, 364, 693, 998
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	4 cut(s)	20, 364, 389, 784
AvaI	CYCGRG	1 cut(s)	299
AvaII	GGWCC	4 cut(s)	152, 364, 693, 998
BamHI	GGATCC	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	428
BbsI	GAAGAC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	765
BbvI	GCAGC	2 cut(s)	321, 461
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BciT130I	CCWGG	2 cut(s)	755, 872
BciVI	GTATCC	3 cut(s)	518, 538, 747
BcnI	CCSGG	1 cut(s)	144
BcoDI	GTCTC	3 cut(s)	561, 685, 911
BfuI	GTATCC	3 cut(s)	518, 538, 747
BisI	GCNGC	4 cut(s)	148, 335, 450, 841
BlsI	GCNGC	4 cut(s)	149, 336, 451, 842
Bme1390I	CCNGG	3 cut(s)	144, 755, 872
Bme18I	GGWCC	4 cut(s)	152, 364, 693, 998
BmeT110I	CYCGRG	1 cut(s)	299
BmgBI	CACGTC	1 cut(s)	760
BmgT120I	GGNCC	4 cut(s)	152, 364, 693, 998
BmiI	GGNNCC	2 cut(s)	192, 430
BmrFI	CCNGG	3 cut(s)	144, 755, 872
BmrI	ACTGGG	1 cut(s)	849
BmsI	GCATC	7 cut(s)	122, 190, 227, 250, 352, 583, 807
BmuI	ACTGGG	1 cut(s)	849
BpiI	GAAGAC	1 cut(s)	130
BpuEI	CTTGAG	2 cut(s)	408, 709
BpuMI	CCSGG	1 cut(s)	144
BsaAI	YACGTR	1 cut(s)	961
BsaI	GGTCTC	2 cut(s)	561, 911
BsaJI	CCNNGG	3 cut(s)	142, 195, 625
BsaWI	WCCGGW	1 cut(s)	995
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 149, 662
Bse1I	ACTGG	2 cut(s)	496, 855
Bse3DI	GCAATG	1 cut(s)	965
BseBI	CCWGG	2 cut(s)	755, 872
BseDI	CCNNGG	3 cut(s)	142, 195, 625
BseGI	GGATG	3 cut(s)	113, 205, 218
BseLI	CCNNNNNNNGG	3 cut(s)	14, 149, 662
BseMI	GCAATG	1 cut(s)	965
BseMII	CTCAG	3 cut(s)	189, 200, 200
BseNI	ACTGG	2 cut(s)	496, 855
BseXI	GCAGC	2 cut(s)	321, 461
BshNI	GGYRCC	1 cut(s)	428
BsiHKAI	GWGCWC	1 cut(s)	765
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	2 cut(s)	144, 996
BslI	CCNNNNNNNGG	3 cut(s)	14, 149, 662
BsmAI	GTCTC	3 cut(s)	561, 685, 911
Bso31I	GGTCTC	2 cut(s)	561, 911
BsoBI	CYCGRG	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	765
Bsp143I	GATC	7 cut(s)	163, 190, 289, 312, 354, 771, 781
BspACI	CCGC	3 cut(s)	147, 150, 840
BspCNI	CTCAG	3 cut(s)	188, 199, 201
BspLI	GGNNCC	2 cut(s)	192, 430
BspPI	GGATC	5 cut(s)	158, 185, 198, 320, 776
BspQI	GCTCTTC	1 cut(s)	399
BspT107I	GGYRCC	1 cut(s)	428
BspTNI	GGTCTC	2 cut(s)	561, 911
BsrDI	GCAATG	1 cut(s)	965
BsrI	ACTGG	2 cut(s)	496, 855
BssECI	CCNNGG	3 cut(s)	142, 195, 625
BssMI	GATC	7 cut(s)	163, 190, 289, 312, 354, 771, 781
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	2 cut(s)	755, 872
Bst6I	CTCTTC	2 cut(s)	128, 399
BstBAI	YACGTR	1 cut(s)	961
BstC8I	GCNNGC	2 cut(s)	732, 888
BstDEI	CTNAG	4 cut(s)	175, 186, 209, 563
BstF5I	GGATG	3 cut(s)	113, 205, 218
BstKTI	GATC	7 cut(s)	166, 193, 292, 315, 357, 774, 784
BstMAI	GTCTC	3 cut(s)	561, 685, 911
BstMBI	GATC	7 cut(s)	163, 190, 289, 312, 354, 771, 781
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstNI	CCWGG	2 cut(s)	755, 872
BstNSI	RCATGY	1 cut(s)	615
BstSCI	CCNGG	3 cut(s)	142, 753, 870
BstV1I	GCAGC	2 cut(s)	321, 461
BstV2I	GAAGAC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BsuI	GTATCC	3 cut(s)	518, 538, 747
BtgZI	GCGATG	1 cut(s)	115
BtrI	CACGTC	1 cut(s)	760
BtsCI	GGATG	3 cut(s)	113, 205, 218
BtsI	GCAGTG	1 cut(s)	403
BtsIMutI	CAGTG	2 cut(s)	251, 403
Cac8I	GCNNGC	2 cut(s)	732, 888
Cfr13I	GGNCC	4 cut(s)	152, 364, 693, 998
CsiI	ACCWGGT	1 cut(s)	870
Csp6I	GTAC	1 cut(s)	718
CviAII	CATG	4 cut(s)	223, 457, 478, 612
CviQI	GTAC	1 cut(s)	718
DdeI	CTNAG	4 cut(s)	175, 186, 209, 563
DpnI	GATC	7 cut(s)	165, 192, 291, 314, 356, 773, 783
DpnII	GATC	7 cut(s)	163, 190, 289, 312, 354, 771, 781
DraI	TTTAAA	1 cut(s)	867
Eam1104I	CTCTTC	2 cut(s)	128, 399
EarI	CTCTTC	2 cut(s)	128, 399
EciI	GGCGGA	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	195
Eco31I	GGTCTC	2 cut(s)	561, 911
Eco47I	GGWCC	4 cut(s)	152, 364, 693, 998
Eco57I	CTGAAG	1 cut(s)	359
Eco88I	CYCGRG	1 cut(s)	299
EcoRII	CCWGG	2 cut(s)	753, 870
EcoT14I	CCWWGG	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	4 cut(s)	226, 460, 481, 615
FaiI	YATR	9 cut(s)	162, 224, 239, 376, 458, 479, 557, 613, 675
FatI	CATG	4 cut(s)	222, 456, 477, 611
Fnu4HI	GCNGC	4 cut(s)	148, 335, 450, 841
FokI	GGATG	3 cut(s)	100, 205, 212
Fsp4HI	GCNGC	4 cut(s)	148, 335, 450, 841
GluI	GCNGC	4 cut(s)	148, 335, 450, 841
HapII	CCGG	2 cut(s)	144, 996
Hin1II	CATG	4 cut(s)	226, 460, 481, 615
HinfI	GANTC	5 cut(s)	73, 328, 492, 632, 816
HpaII	CCGG	2 cut(s)	144, 996
HphI	GGTGA	4 cut(s)	20, 364, 389, 784
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	9 cut(s)	210, 312, 317, 466, 626, 657, 741, 781, 803
Hpy188III	TCNNGA	8 cut(s)	67, 188, 299, 301, 515, 749, 908, 944
Hpy8I	GTNNAC	1 cut(s)	646
HpyAV	CCTTC	5 cut(s)	128, 220, 662, 984, 990
HpyCH4IV	ACGT	2 cut(s)	759, 960
HpyCH4V	TGCA	7 cut(s)	203, 218, 475, 596, 611, 879, 886
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	4 cut(s)	175, 186, 209, 563
HpySE526I	ACGT	2 cut(s)	759, 960
Hsp92II	CATG	4 cut(s)	226, 460, 481, 615
Kzo9I	GATC	7 cut(s)	163, 190, 289, 312, 354, 771, 781
LguI	GCTCTTC	1 cut(s)	399
Lsp1109I	GCAGC	2 cut(s)	321, 461
LweI	GCATC	7 cut(s)	122, 190, 227, 250, 352, 583, 807
MabI	ACCWGGT	1 cut(s)	870
MaeII	ACGT	2 cut(s)	759, 960
MaeIII	GTNAC	3 cut(s)	103, 244, 614
MalI	GATC	7 cut(s)	165, 192, 291, 314, 356, 773, 783
MboI	GATC	7 cut(s)	163, 190, 289, 312, 354, 771, 781
MboII	GAAGA	8 cut(s)	115, 130, 386, 501, 577, 975, 981, 984
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	765
MluCI	AATT	6 cut(s)	581, 606, 701, 892, 933, 955
MnlI	CCTC	8 cut(s)	63, 411, 439, 472, 620, 656, 938, 981
Mph1103I	ATGCAT	1 cut(s)	220
MseI	TTAA	1 cut(s)	866
MspI	CCGG	2 cut(s)	144, 996
MspR9I	CCNGG	3 cut(s)	144, 755, 872
MvaI	CCWGG	2 cut(s)	755, 872
MwoI	GCNNNNNNNGC	1 cut(s)	340
NciI	CCSGG	1 cut(s)	144
NdeII	GATC	7 cut(s)	163, 190, 289, 312, 354, 771, 781
NlaIII	CATG	4 cut(s)	226, 460, 481, 615
NlaIV	GGNNCC	2 cut(s)	192, 430
NmuCI	GTSAC	2 cut(s)	244, 614
NsiI	ATGCAT	1 cut(s)	220
NspI	RCATGY	1 cut(s)	615
PaeR7I	CTCGAG	1 cut(s)	299
PciSI	GCTCTTC	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	1 cut(s)	756
PfeI	GAWTC	5 cut(s)	73, 328, 492, 632, 816
PflMI	CCANNNNNTGG	1 cut(s)	14
PkrI	GCNGC	4 cut(s)	149, 336, 451, 842
Ppu21I	YACGTR	1 cut(s)	961
Psp6I	CCWGG	2 cut(s)	753, 870
PspGI	CCWGG	2 cut(s)	753, 870
PspN4I	GGNNCC	2 cut(s)	192, 430
PspPI	GGNCC	4 cut(s)	152, 364, 693, 998
PsuI	RGATCY	1 cut(s)	190
RsaI	GTAC	1 cut(s)	719
RsaNI	GTAC	1 cut(s)	718
SapI	GCTCTTC	1 cut(s)	399
SaqAI	TTAA	1 cut(s)	866
SatI	GCNGC	4 cut(s)	148, 335, 450, 841
Sau3AI	GATC	7 cut(s)	163, 190, 289, 312, 354, 771, 781
Sau96I	GGNCC	4 cut(s)	152, 364, 693, 998
ScrFI	CCNGG	3 cut(s)	144, 755, 872
SduI	GDGCHC	1 cut(s)	765
SexAI	ACCWGGT	1 cut(s)	870
SfaNI	GCATC	7 cut(s)	122, 190, 227, 250, 352, 583, 807
Sfr274I	CTCGAG	1 cut(s)	299
SinI	GGWCC	4 cut(s)	152, 364, 693, 998
SlaI	CTCGAG	1 cut(s)	299
SmlI	CTYRAG	3 cut(s)	299, 423, 724
SmoI	CTYRAG	3 cut(s)	299, 423, 724
Sse9I	AATT	6 cut(s)	581, 606, 701, 892, 933, 955
SsiI	CCGC	3 cut(s)	147, 150, 840
SspI	AATATT	2 cut(s)	82, 285
StyD4I	CCNGG	3 cut(s)	142, 753, 870
StyI	CCWWGG	1 cut(s)	195
TaiI	ACGT	2 cut(s)	762, 963
TaqI	TCGA	4 cut(s)	288, 300, 516, 909
TasI	AATT	6 cut(s)	581, 606, 701, 892, 933, 955
TauI	GCSGC	2 cut(s)	150, 843
TfiI	GAWTC	5 cut(s)	73, 328, 492, 632, 816
Tru1I	TTAA	1 cut(s)	866
Tru9I	TTAA	1 cut(s)	866
TscAI	CASTG	2 cut(s)	258, 410
TseFI	GTSAC	2 cut(s)	244, 614
TseI	GCWGC	2 cut(s)	334, 449
Tsp45I	GTSAC	2 cut(s)	244, 614
TspDTI	ATGAA	5 cut(s)	14, 239, 445, 778, 975
TspGWI	ACGGA	5 cut(s)	72, 557, 675, 706, 774
TspRI	CASTG	2 cut(s)	258, 410
Van91I	CCANNNNNTGG	1 cut(s)	14
VpaK11BI	GGWCC	4 cut(s)	152, 364, 693, 998
XapI	RAATTY	1 cut(s)	933
XceI	RCATGY	1 cut(s)	615
XhoI	CTCGAG	1 cut(s)	299
Zsp2I	ATGCAT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.