RchiOBHm_Chr7g0177411

At4g15970-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0006034
Physical Location & Seq
Reverse (-)
397899 .. 400296
2398 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15802

Sequence Viewer

Length: 1188 bp
ATGAGCAGTAAATCATTATCACCAGTAGCAGCACTATTATCTGTAACAGTTATTGGGAATAACAGTACTGGTGTTATGGAGAATAACACAAAAGCTGCAACACCAAAGGCTAGTGGTGTTCATCACCATCATCATCATGGATTGGTCAAGAGGATTCTAAATATTGCTCTGGTGTGTGTGGCTGTTACTCTGGCTTCCCTTCTCTTCTACATCGCTGTCTTCCCCGGCGGCGGACCTATTTATGATCCTTTGTTCTCAGCTAAATCTCAGGATCCCTTGGATGCAGTTCTGAGAAATGCATCCATGAAGGACAAGACCATAATCGTCACAACACTGAATGATGCGTGGGCAGAACCCAACTCAATATTCGATCTGTTTCTCGAGAGTTTTCGGATCGGAAACAACACGAATCGGCTGCTGAAGCATCTGGTGGTGATCTGCTTGGACCAAAAGGCATACTCTCGTTGCTTGGCTCTTCACCCTCACTGCTACCAACTCTACACTCAAGGTGCCAACTTTACCAGCGAGGCAGCTTTCATGTCCTCCGATTACTTGCACATGATGTGGAGAAGAATCCAGTTTTTGACTTCTATTCTCGAAAAAGGATACAGCTTTGTCTTTACGGATACTGACATTATGTGGCTTAGGGACCCATTCCCACAATTCTTCCCAGATGCAGACTTCCAAATTGCATGTGACTACTTCCGAGGCGATTCTTACGATGTGAACAACCTTCCGAACGGAGGATTTACCTATGTAGTCTCTAATAAACGGACCACCCAATTCTACAACTTTTGGTACTTCTCAAGGCAGGCGTATCCGAATAATCACGACCAGGACGTGCTCAACAAGATCAAATCTGATCCGTTCATCACCAGCATCGGATTGAAAATGAGATTCTTGGACACCAAATACTTTGGCGGCTTCTGTCAGCCCAGTAAAGATTTAAACCTGGTTTGCACAATGCACGCTAATTGCTGTGTTGGTCTCGATAACAAAGTCAATGACCTCAAAATTCTGCTTCAAGATTGGAGAAATTACGTGGCATTGCCTCCTTCTCCTTCTTCATCTTCTTCCGGTCCTACTTCTAATACCACCACGCCTCCAACAACTATGCCCTCATGGACCGTTCCACAGAACTGCAGTACTTCCTTCCAACGCCAACGCCACGGCCGGCACTTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

395

Amino Acids

44.47

Weight (kDa)

8.59

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 139 - 337 6.9e-69 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 509
AciI CCGC 3 cut(s) 228, 231, 921
AclWI GGATC 5 cut(s) 239, 266, 279, 401, 857
AcoI YGGCCR 1 cut(s) 1171
AcsI RAATTY 1 cut(s) 1014
AcuI CTGAAG 1 cut(s) 440
AfaI GTAC 3 cut(s) 67, 800, 1147
AfiI CCNNNNNNNGG 2 cut(s) 230, 743
AgsI TTSAA 2 cut(s) 889, 1025
AjiI CACGTC 1 cut(s) 841
AjnI CCWGG 2 cut(s) 834, 951
AjuI GAANNNNNNNTTGG 2 cut(s) 350, 382
AluBI AGCT 4 cut(s) 95, 260, 533, 612
AluI AGCT 4 cut(s) 95, 260, 533, 612
Alw21I GWGCWC 1 cut(s) 846
Alw26I GTCTC 2 cut(s) 766, 992
AlwI GGATC 5 cut(s) 239, 266, 279, 401, 857
Ama87I CYCGRG 1 cut(s) 380
AoxI GGCC 1 cut(s) 1171
ApeKI GCWGC 4 cut(s) 29, 95, 415, 530
ApoI RAATTY 1 cut(s) 1014
AspS9I GGNCC 6 cut(s) 233, 445, 649, 774, 1079, 1125
AsuC2I CCSGG 1 cut(s) 225
AsuHPI GGTGA 5 cut(s) 12, 116, 445, 470, 865
AvaI CYCGRG 1 cut(s) 380
AvaII GGWCC 6 cut(s) 233, 445, 649, 774, 1079, 1125
BamHI GGATCC 1 cut(s) 271
BanI GGYRCC 1 cut(s) 509
BbsI GAAGAC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 846
BbvI GCAGC 4 cut(s) 41, 82, 402, 542
BccI CCATC 1 cut(s) 135
BceAI ACGGC 1 cut(s) 1186
BcgI CGANNNNNNTGC 2 cut(s) 397, 431
BciT130I CCWGG 2 cut(s) 836, 953
BciVI GTATCC 3 cut(s) 599, 619, 828
BcnI CCSGG 1 cut(s) 225
BcoDI GTCTC 2 cut(s) 766, 992
BfaI CTAG 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 1141
BfuI GTATCC 3 cut(s) 599, 619, 828
BisI GCNGC 6 cut(s) 30, 96, 229, 416, 531, 922
BlsI GCNGC 6 cut(s) 31, 97, 230, 417, 532, 923
BmcAI AGTACT 2 cut(s) 67, 1147
Bme1390I CCNGG 3 cut(s) 225, 836, 953
Bme18I GGWCC 6 cut(s) 233, 445, 649, 774, 1079, 1125
BmeT110I CYCGRG 1 cut(s) 380
BmgBI CACGTC 1 cut(s) 841
BmgT120I GGNCC 6 cut(s) 233, 445, 649, 774, 1079, 1125
BmiI GGNNCC 4 cut(s) 273, 511, 650, 651
BmrFI CCNGG 3 cut(s) 225, 836, 953
BmrI ACTGGG 1 cut(s) 930
BmsI GCATC 6 cut(s) 271, 308, 331, 433, 664, 888
BmuI ACTGGG 1 cut(s) 930
BpiI GAAGAC 1 cut(s) 211
Bpu10I CCTNAGC 1 cut(s) 644
BpuEI CTTGAG 2 cut(s) 489, 790
BpuMI CCSGG 1 cut(s) 225
BsaAI YACGTR 1 cut(s) 1042
BsaI GGTCTC 1 cut(s) 992
BsaJI CCNNGG 4 cut(s) 223, 276, 706, 1168
BsaWI WCCGGW 1 cut(s) 1076
BsaXI ACNNNNNCTCC 2 cut(s) 1087, 1117
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 743
Bse118I RCCGGY 1 cut(s) 1173
Bse1I ACTGG 4 cut(s) 23, 73, 577, 936
Bse3DI GCAATG 1 cut(s) 1046
BseBI CCWGG 2 cut(s) 836, 953
BseDI CCNNGG 4 cut(s) 223, 276, 706, 1168
BseGI GGATG 2 cut(s) 286, 299
BseLI CCNNNNNNNGG 2 cut(s) 230, 743
BseMI GCAATG 1 cut(s) 1046
BseMII CTCAG 3 cut(s) 270, 281, 281
BseNI ACTGG 4 cut(s) 23, 73, 577, 936
BseX3I CGGCCG 1 cut(s) 1171
BseXI GCAGC 4 cut(s) 41, 82, 402, 542
Bsh1285I CGRYCG 1 cut(s) 1174
BshFI GGCC 1 cut(s) 1173
BshNI GGYRCC 1 cut(s) 509
BsiEI CGRYCG 1 cut(s) 1174
BsiHKAI GWGCWC 1 cut(s) 846
BsiHKCI CYCGRG 1 cut(s) 380
BsiSI CCGG 3 cut(s) 225, 1077, 1174
BslFI GGGAC 1 cut(s) 662
BslI CCNNNNNNNGG 2 cut(s) 230, 743
BsmAI GTCTC 2 cut(s) 766, 992
BsmFI GGGAC 1 cut(s) 662
BsnI GGCC 1 cut(s) 1173
Bso31I GGTCTC 1 cut(s) 992
BsoBI CYCGRG 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 846
Bsp143I GATC 7 cut(s) 244, 271, 370, 393, 435, 852, 862
BspACI CCGC 3 cut(s) 228, 231, 921
BspANI GGCC 1 cut(s) 1173
BspCNI CTCAG 3 cut(s) 269, 280, 282
BspLI GGNNCC 4 cut(s) 273, 511, 650, 651
BspMAI CTGCAG 1 cut(s) 1145
BspPI GGATC 5 cut(s) 239, 266, 279, 401, 857
BspQI GCTCTTC 1 cut(s) 480
BspT107I GGYRCC 1 cut(s) 509
BspTNI GGTCTC 1 cut(s) 992
BsrDI GCAATG 1 cut(s) 1046
BsrFI RCCGGY 1 cut(s) 1173
BsrI ACTGG 4 cut(s) 23, 73, 577, 936
BssAI RCCGGY 1 cut(s) 1173
BssECI CCNNGG 4 cut(s) 223, 276, 706, 1168
BssMI GATC 7 cut(s) 244, 271, 370, 393, 435, 852, 862
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 836, 953
Bst4CI ACNGT 3 cut(s) 49, 65, 1129
Bst6I CTCTTC 2 cut(s) 209, 480
BstBAI YACGTR 1 cut(s) 1042
BstC8I GCNNGC 3 cut(s) 813, 969, 1175
BstDEI CTNAG 4 cut(s) 256, 267, 290, 644
BstDSI CCRYGG 1 cut(s) 1168
BstF5I GGATG 2 cut(s) 286, 299
BstKTI GATC 7 cut(s) 247, 274, 373, 396, 438, 855, 865
BstMAI GTCTC 2 cut(s) 766, 992
BstMBI GATC 7 cut(s) 244, 271, 370, 393, 435, 852, 862
BstMCI CGRYCG 1 cut(s) 1174
BstMWI GCNNNNNNNGC 1 cut(s) 421
BstNI CCWGG 2 cut(s) 836, 953
BstNSI RCATGY 1 cut(s) 696
BstSCI CCNGG 3 cut(s) 223, 834, 951
BstSFI CTRYAG 1 cut(s) 1141
BstV1I GCAGC 4 cut(s) 41, 82, 402, 542
BstV2I GAAGAC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BstZI CGGCCG 1 cut(s) 1171
BsuI GTATCC 3 cut(s) 599, 619, 828
BsuRI GGCC 1 cut(s) 1173
BtgI CCRYGG 1 cut(s) 1168
BtgZI GCGATG 1 cut(s) 196
BtrI CACGTC 1 cut(s) 841
BtsCI GGATG 2 cut(s) 286, 299
BtsI GCAGTG 1 cut(s) 484
BtsIMutI CAGTG 2 cut(s) 332, 484
Cac8I GCNNGC 3 cut(s) 813, 969, 1175
Cfr10I RCCGGY 1 cut(s) 1173
Cfr13I GGNCC 6 cut(s) 233, 445, 649, 774, 1079, 1125
CsiI ACCWGGT 1 cut(s) 951
Csp6I GTAC 3 cut(s) 66, 799, 1146
CviAII CATG 6 cut(s) 137, 304, 538, 559, 693, 1122
CviQI GTAC 3 cut(s) 66, 799, 1146
DdeI CTNAG 4 cut(s) 256, 267, 290, 644
DpnI GATC 7 cut(s) 246, 273, 372, 395, 437, 854, 864
DpnII GATC 7 cut(s) 244, 271, 370, 393, 435, 852, 862
DraI TTTAAA 1 cut(s) 948
EaeI YGGCCR 1 cut(s) 1171
EagI CGGCCG 1 cut(s) 1171
Eam1104I CTCTTC 2 cut(s) 209, 480
EarI CTCTTC 2 cut(s) 209, 480
EciI GGCGGA 1 cut(s) 246
EclXI CGGCCG 1 cut(s) 1171
Eco130I CCWWGG 1 cut(s) 276
Eco31I GGTCTC 1 cut(s) 992
Eco47I GGWCC 6 cut(s) 233, 445, 649, 774, 1079, 1125
Eco52I CGGCCG 1 cut(s) 1171
Eco57I CTGAAG 1 cut(s) 440
Eco88I CYCGRG 1 cut(s) 380
EcoO109I RGGNCCY 1 cut(s) 649
EcoRII CCWGG 2 cut(s) 834, 951
EcoT14I CCWWGG 1 cut(s) 276
EcoT22I ATGCAT 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 6 cut(s) 140, 307, 541, 562, 696, 1125
FaqI GGGAC 1 cut(s) 662
FatI CATG 6 cut(s) 136, 303, 537, 558, 692, 1121
Fnu4HI GCNGC 6 cut(s) 30, 96, 229, 416, 531, 922
FokI GGATG 2 cut(s) 286, 293
Fsp4HI GCNGC 6 cut(s) 30, 96, 229, 416, 531, 922
FspBI CTAG 1 cut(s) 111
GluI GCNGC 6 cut(s) 30, 96, 229, 416, 531, 922
HaeIII GGCC 1 cut(s) 1173
HapII CCGG 3 cut(s) 225, 1077, 1174
Hin1II CATG 6 cut(s) 140, 307, 541, 562, 696, 1125
HinfI GANTC 5 cut(s) 154, 409, 573, 713, 897
HpaII CCGG 3 cut(s) 225, 1077, 1174
HphI GGTGA 5 cut(s) 12, 116, 445, 470, 865
Hpy166II GTNNAC 1 cut(s) 727
Hpy188I TCNGA 9 cut(s) 291, 393, 398, 547, 707, 738, 822, 862, 884
Hpy188III TCNNGA 8 cut(s) 148, 269, 380, 382, 596, 830, 989, 1025
Hpy8I GTNNAC 1 cut(s) 727
HpyAV CCTTC 6 cut(s) 209, 301, 743, 1065, 1071, 1162
HpyCH4III ACNGT 3 cut(s) 49, 65, 1129
HpyCH4IV ACGT 2 cut(s) 840, 1041
HpyCH4V TGCA 9 cut(s) 98, 284, 299, 556, 677, 692, 960, 967, 1143
HpyF10VI GCNNNNNNNGC 1 cut(s) 421
HpyF3I CTNAG 4 cut(s) 256, 267, 290, 644
HpySE526I ACGT 2 cut(s) 840, 1041
Hsp92II CATG 6 cut(s) 140, 307, 541, 562, 696, 1125
KflI GGGWCCC 1 cut(s) 649
KroI GCCGGC 1 cut(s) 1173
KroNI GCCGGC 1 cut(s) 1175
Kzo9I GATC 7 cut(s) 244, 271, 370, 393, 435, 852, 862
LguI GCTCTTC 1 cut(s) 480
Lsp1109I GCAGC 4 cut(s) 41, 82, 402, 542
LweI GCATC 6 cut(s) 271, 308, 331, 433, 664, 888
MabI ACCWGGT 1 cut(s) 951
MaeI CTAG 1 cut(s) 111
MaeII ACGT 2 cut(s) 840, 1041
MaeIII GTNAC 4 cut(s) 43, 184, 325, 695
MalI GATC 7 cut(s) 246, 273, 372, 395, 437, 854, 864
MboI GATC 7 cut(s) 244, 271, 370, 393, 435, 852, 862
MboII GAAGA 8 cut(s) 196, 211, 467, 582, 658, 1056, 1062, 1065
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 1 cut(s) 846
MluCI AATT 6 cut(s) 662, 687, 782, 973, 1014, 1036
MmeI TCCRAC 2 cut(s) 1130, 1180
Mph1103I ATGCAT 1 cut(s) 301
MroNI GCCGGC 1 cut(s) 1173
MseI TTAA 1 cut(s) 947
MslI CAYNNNNRTG 1 cut(s) 135
MspI CCGG 3 cut(s) 225, 1077, 1174
MspR9I CCNGG 3 cut(s) 225, 836, 953
MvaI CCWGG 2 cut(s) 836, 953
MwoI GCNNNNNNNGC 1 cut(s) 421
NaeI GCCGGC 1 cut(s) 1175
NciI CCSGG 1 cut(s) 225
NdeII GATC 7 cut(s) 244, 271, 370, 393, 435, 852, 862
NgoMIV GCCGGC 1 cut(s) 1173
NlaIII CATG 6 cut(s) 140, 307, 541, 562, 696, 1125
NlaIV GGNNCC 4 cut(s) 273, 511, 650, 651
NmuCI GTSAC 2 cut(s) 325, 695
NsiI ATGCAT 1 cut(s) 301
NspI RCATGY 1 cut(s) 696
PaeR7I CTCGAG 1 cut(s) 380
PciSI GCTCTTC 1 cut(s) 480
PcsI WCGNNNNNNNCGW 1 cut(s) 837
PdiI GCCGGC 1 cut(s) 1175
PfeI GAWTC 5 cut(s) 154, 409, 573, 713, 897
PkrI GCNGC 6 cut(s) 31, 97, 230, 417, 532, 923
Ppu21I YACGTR 1 cut(s) 1042
PpuMI RGGWCCY 1 cut(s) 649
Psp5II RGGWCCY 1 cut(s) 649
Psp6I CCWGG 2 cut(s) 834, 951
PspGI CCWGG 2 cut(s) 834, 951
PspN4I GGNNCC 4 cut(s) 273, 511, 650, 651
PspPI GGNCC 6 cut(s) 233, 445, 649, 774, 1079, 1125
PspPPI RGGWCCY 1 cut(s) 649
PstI CTGCAG 1 cut(s) 1145
PsuI RGATCY 1 cut(s) 271
RsaI GTAC 3 cut(s) 67, 800, 1147
RsaNI GTAC 3 cut(s) 66, 799, 1146
RseI CAYNNNNRTG 1 cut(s) 135
SapI GCTCTTC 1 cut(s) 480
SaqAI TTAA 1 cut(s) 947
SatI GCNGC 6 cut(s) 30, 96, 229, 416, 531, 922
Sau3AI GATC 7 cut(s) 244, 271, 370, 393, 435, 852, 862
Sau96I GGNCC 6 cut(s) 233, 445, 649, 774, 1079, 1125
ScaI AGTACT 2 cut(s) 67, 1147
ScrFI CCNGG 3 cut(s) 225, 836, 953
SduI GDGCHC 1 cut(s) 846
SexAI ACCWGGT 1 cut(s) 951
SfaNI GCATC 6 cut(s) 271, 308, 331, 433, 664, 888
SfcI CTRYAG 1 cut(s) 1141
Sfr274I CTCGAG 1 cut(s) 380
SinI GGWCC 6 cut(s) 233, 445, 649, 774, 1079, 1125
SlaI CTCGAG 1 cut(s) 380
SmiMI CAYNNNNRTG 1 cut(s) 135
SmlI CTYRAG 3 cut(s) 380, 504, 805
SmoI CTYRAG 3 cut(s) 380, 504, 805
Sse9I AATT 6 cut(s) 662, 687, 782, 973, 1014, 1036
SsiI CCGC 3 cut(s) 228, 231, 921
SspI AATATT 2 cut(s) 163, 366
SspMI CTAG 1 cut(s) 111
StyD4I CCNGG 3 cut(s) 223, 834, 951
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 3 cut(s) 49, 65, 1129
TaiI ACGT 2 cut(s) 843, 1044
TaqI TCGA 4 cut(s) 369, 381, 597, 990
TasI AATT 6 cut(s) 662, 687, 782, 973, 1014, 1036
TatI WGTACW 2 cut(s) 65, 1145
TauI GCSGC 2 cut(s) 231, 924
TfiI GAWTC 5 cut(s) 154, 409, 573, 713, 897
Tru1I TTAA 1 cut(s) 947
Tru9I TTAA 1 cut(s) 947
TscAI CASTG 2 cut(s) 339, 491
TseFI GTSAC 2 cut(s) 325, 695
TseI GCWGC 4 cut(s) 29, 95, 415, 530
Tsp45I GTSAC 2 cut(s) 325, 695
TspDTI ATGAA 5 cut(s) 110, 320, 526, 859, 1056
TspGWI ACGGA 4 cut(s) 638, 756, 787, 855
TspRI CASTG 2 cut(s) 339, 491
VpaK11BI GGWCC 6 cut(s) 233, 445, 649, 774, 1079, 1125
XapI RAATTY 1 cut(s) 1014
XceI RCATGY 1 cut(s) 696
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
XhoI CTCGAG 1 cut(s) 380
XspI CTAG 1 cut(s) 111
ZrmI AGTACT 2 cut(s) 67, 1147
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.