AT5G44820

Nucleotide-diphospho-sugar transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006034
Physical Location & Seq
Reverse (-)
18095614 .. 18097611
1998 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G44820.1

Sequence Viewer

Length: 1104 bp
ATGAGTTCTTCGTCTTCCTCATCCTCTTCTTCTTCTTCTTCTCGCAGTAAATTTATGGATTCAGGATTTATAATCGGGCGAAAAGAACTAACAAGAATTTTGATACTGTTTCTTGGTTTAACCGCTTCATGTCTGGTTTTATACAAAACAGCTTATCCTCTGCAACGACTTAATGTCAGCAATCTAACCTCTCTCCAAGCTTCTCCATCTCCACTATTACCAAACCTCAACTCATCAGAGATTTCTCCAGAAACGACAAAACCAAAGTTGAGTTTCAAGGAGATTTTGGAGAACGCATCAACGAAGAACAATACAGTGATTATAACGACATTGAATCAAGCTTGGGCAGAACCAAACTCTTTGTTTGATCTCTTCTTAGAGAGTTTTCGTATTGGACAAGGAACACAACAACTTCTGAAACATGTAGTAGTGGTTTGCTTGGATATCAAGGCGTTTGAACGATGCTCACAACTTCATACTAACTGTTACCACATTGAAACATCAGAAACTGATTTCTCTGGCGAGAAAGTTTACAACACTCCTGATTATCTTAAGATGATGTGGGCCAGAATCGACCTTCTTACTCAAGTACTTGAGATGGGTTTTAACTTCATCTTCACGGACGCAGATATAATGTGGCTTAGAGATCCATTTCCTCGGTTATATCCAGATGGAGACTTCCAAATGGCGTGTGACAGATTCTTTGGAAATCCTTATGATTCAGACAATTGGGTCAATGGTGGTTTCACATACGTGAGATCAAACAATCGAAGCATTGAGTTTTACAAATTTTGGCACAAATCTCGTCTAGATTATCCAGACTTGCATGATCAAGATGTGTTCAACAGAATCAAGCATGAGCCTTTTATCTCAGAGATTGGAATCCAAATGAGATTCTTTGATACAGTTTACTTTGGTGGGTTTTGTCAAACGAGCAGAGACATAAACTTGGTTTGCACAATGCATGCTAATTGTTGTATTGGTTTGGACAAGAAGCTTCATGATCTGAATCTTGTCCTTGATGATTGGAGAAAGTACCTGTCTTTGTCAGAACCAGTGCAGAACACGACGTGGAGTGTTCCTATGAAGTGTTTGGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

367

Amino Acids

42.22

Weight (kDa)

5.66

Isoelectric Point (pI)

49.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 138 - 336 8.8e-72 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 71, 323
AasI GACNNNNNNGTC 1 cut(s) 731
AciI CCGC 1 cut(s) 123
AclWI GGATC 1 cut(s) 641
AcsI RAATTY 3 cut(s) 50, 96, 788
AdeI CACNNNGTG 1 cut(s) 1071
AfaI GTAC 2 cut(s) 591, 1037
AflII CTTAAG 1 cut(s) 551
AflIII ACRYGT 1 cut(s) 421
AgsI TTSAA 5 cut(s) 277, 334, 458, 497, 844
AhdI GACNNNNNGTC 1 cut(s) 173
AjiI CACGTC 1 cut(s) 1071
AleI CACNNNNGTG 1 cut(s) 752
AluBI AGCT 4 cut(s) 152, 200, 341, 997
AluI AGCT 4 cut(s) 152, 200, 341, 997
Alw26I GTCTC 2 cut(s) 669, 933
AlwI GGATC 1 cut(s) 641
AlwNI CAGNNNCTG 1 cut(s) 509
AoxI GGCC 1 cut(s) 564
ApoI RAATTY 3 cut(s) 50, 96, 788
ArsI GACNNNNNNTTYG 2 cut(s) 686, 718
AspS9I GGNCC 1 cut(s) 564
BbsI GAAGAC 1 cut(s) 6
BccI CCATC 3 cut(s) 214, 592, 665
BcgI CGANNNNNNTGC 2 cut(s) 785, 819
BclI TGATCA 1 cut(s) 829
BcoDI GTCTC 2 cut(s) 669, 933
BfaI CTAG 1 cut(s) 809
BfrI CTTAAG 1 cut(s) 551
BmcAI AGTACT 1 cut(s) 591
BmeRI GACNNNNNGTC 1 cut(s) 173
BmgBI CACGTC 1 cut(s) 1071
BmgT120I GGNCC 1 cut(s) 564
BmsI GCATC 2 cut(s) 305, 452
BpiI GAAGAC 1 cut(s) 6
BpmI CTGGAG 1 cut(s) 231
BpuEI CTTGAG 2 cut(s) 570, 614
BsaAI YACGTR 1 cut(s) 754
BsaBI GATNNNNATC 2 cut(s) 881, 1008
BsaJI CCNNGG 1 cut(s) 656
Bse1I ACTGG 1 cut(s) 1055
Bse8I GATNNNNATC 2 cut(s) 881, 1008
BseDI CCNNGG 1 cut(s) 656
BseGI GGATG 1 cut(s) 20
BseJI GATNNNNATC 2 cut(s) 881, 1008
BseMII CTCAG 1 cut(s) 885
BseNI ACTGG 1 cut(s) 1055
BsgI GTGCAG 1 cut(s) 1079
BshFI GGCC 1 cut(s) 566
BsmAI GTCTC 2 cut(s) 669, 933
BsnI GGCC 1 cut(s) 566
Bsp143I GATC 5 cut(s) 367, 646, 758, 829, 1003
BspACI CCGC 1 cut(s) 123
BspANI GGCC 1 cut(s) 566
BspCNI CTCAG 1 cut(s) 884
BspHI TCATGA 1 cut(s) 1000
BspPI GGATC 1 cut(s) 641
BspTI CTTAAG 1 cut(s) 551
BsrI ACTGG 1 cut(s) 1055
BssECI CCNNGG 1 cut(s) 656
BssMI GATC 5 cut(s) 367, 646, 758, 829, 1003
Bst4CI ACNGT 4 cut(s) 108, 316, 485, 907
Bst6I CTCTTC 2 cut(s) 31, 377
BstAFI CTTAAG 1 cut(s) 551
BstBAI YACGTR 1 cut(s) 754
BstC8I GCNNGC 1 cut(s) 966
BstDEI CTNAG 3 cut(s) 376, 641, 871
BstF5I GGATG 1 cut(s) 20
BstKTI GATC 5 cut(s) 370, 649, 761, 832, 1006
BstMAI GTCTC 2 cut(s) 669, 933
BstMBI GATC 5 cut(s) 367, 646, 758, 829, 1003
BstNSI RCATGY 2 cut(s) 425, 968
BstV2I GAAGAC 1 cut(s) 6
BstX2I RGATCY 1 cut(s) 646
BstYI RGATCY 1 cut(s) 646
BsuRI GGCC 1 cut(s) 566
BtrI CACGTC 1 cut(s) 1071
BtsCI GGATG 1 cut(s) 20
BtsIMutI CAGTG 2 cut(s) 321, 1062
Cac8I GCNNGC 1 cut(s) 966
CaiI CAGNNNCTG 1 cut(s) 509
CciI TCATGA 1 cut(s) 1000
Cfr13I GGNCC 1 cut(s) 564
CseI GACGC 1 cut(s) 632
Csp6I GTAC 2 cut(s) 590, 1036
CviAII CATG 6 cut(s) 129, 422, 827, 857, 965, 1001
CviJI RGCY 7 cut(s) 152, 200, 341, 566, 640, 862, 997
CviKI_1 RGCY 7 cut(s) 152, 200, 341, 566, 640, 862, 997
CviQI GTAC 2 cut(s) 590, 1036
DdeI CTNAG 3 cut(s) 376, 641, 871
DpnI GATC 5 cut(s) 369, 648, 760, 831, 1005
DpnII GATC 5 cut(s) 367, 646, 758, 829, 1003
DraIII CACNNNGTG 1 cut(s) 1071
DrdI GACNNNNNNGTC 1 cut(s) 731
DriI GACNNNNNGTC 1 cut(s) 173
DseDI GACNNNNNNGTC 1 cut(s) 731
Eam1104I CTCTTC 2 cut(s) 31, 377
Eam1105I GACNNNNNGTC 1 cut(s) 173
EarI CTCTTC 2 cut(s) 31, 377
Eco32I GATATC 1 cut(s) 445
EcoRV GATATC 1 cut(s) 445
EcoT22I ATGCAT 1 cut(s) 966
FaeI CATG 6 cut(s) 132, 425, 830, 860, 968, 1004
FatI CATG 6 cut(s) 128, 421, 826, 856, 964, 1000
FbaI TGATCA 1 cut(s) 829
FokI GGATG 1 cut(s) 7
FspBI CTAG 1 cut(s) 809
GsuI CTGGAG 1 cut(s) 231
HaeIII GGCC 1 cut(s) 566
HgaI GACGC 1 cut(s) 632
Hin1II CATG 6 cut(s) 132, 425, 830, 860, 968, 1004
HindIII AAGCTT 3 cut(s) 198, 339, 995
HinfI GANTC 9 cut(s) 59, 334, 570, 699, 719, 849, 882, 894, 1009
Hpy166II GTNNAC 2 cut(s) 532, 910
Hpy188I TCNGA 7 cut(s) 238, 417, 505, 724, 874, 1008, 1051
Hpy188III TCNNGA 8 cut(s) 63, 248, 542, 668, 809, 818, 833, 1001
Hpy8I GTNNAC 2 cut(s) 532, 910
Hpy99I CGWCG 1 cut(s) 1072
HpyAV CCTTC 1 cut(s) 587
HpyCH4III ACNGT 4 cut(s) 108, 316, 485, 907
HpyCH4IV ACGT 2 cut(s) 753, 1070
HpyCH4V TGCA 5 cut(s) 163, 826, 957, 964, 1060
HpyF3I CTNAG 3 cut(s) 376, 641, 871
HpySE526I ACGT 2 cut(s) 753, 1070
Hsp92II CATG 6 cut(s) 132, 425, 830, 860, 968, 1004
Ksp22I TGATCA 1 cut(s) 829
Kzo9I GATC 5 cut(s) 367, 646, 758, 829, 1003
LweI GCATC 2 cut(s) 305, 452
MaeI CTAG 1 cut(s) 809
MaeII ACGT 2 cut(s) 753, 1070
MaeIII GTNAC 2 cut(s) 485, 692
MalI GATC 5 cut(s) 369, 648, 760, 831, 1005
MboI GATC 5 cut(s) 367, 646, 758, 829, 1003
MboII GAAGA 9 cut(s) 6, 18, 21, 24, 27, 30, 316, 364, 607
MfeI CAATTG 1 cut(s) 727
MflI RGATCY 1 cut(s) 646
MluCI AATT 5 cut(s) 50, 96, 727, 788, 970
MnlI CCTC 6 cut(s) 28, 34, 168, 199, 236, 666
Mph1103I ATGCAT 1 cut(s) 966
MseI TTAA 4 cut(s) 119, 171, 552, 606
MslI CAYNNNNRTG 1 cut(s) 752
MspCI CTTAAG 1 cut(s) 551
MunI CAATTG 1 cut(s) 727
NdeII GATC 5 cut(s) 367, 646, 758, 829, 1003
NlaIII CATG 6 cut(s) 132, 425, 830, 860, 968, 1004
NmuCI GTSAC 1 cut(s) 692
NsiI ATGCAT 1 cut(s) 966
NspI RCATGY 2 cut(s) 425, 968
OliI CACNNNNGTG 1 cut(s) 752
PaeI GCATGC 1 cut(s) 968
PagI TCATGA 1 cut(s) 1000
PciI ACATGT 1 cut(s) 421
PfeI GAWTC 9 cut(s) 59, 334, 570, 699, 719, 849, 882, 894, 1009
Ppu21I YACGTR 1 cut(s) 754
PscI ACATGT 1 cut(s) 421
PsiI TTATAA 2 cut(s) 71, 323
PspPI GGNCC 1 cut(s) 564
PstNI CAGNNNCTG 1 cut(s) 509
PsuI RGATCY 1 cut(s) 646
RsaI GTAC 2 cut(s) 591, 1037
RsaNI GTAC 2 cut(s) 590, 1036
RseI CAYNNNNRTG 1 cut(s) 752
SaqAI TTAA 4 cut(s) 119, 171, 552, 606
Sau3AI GATC 5 cut(s) 367, 646, 758, 829, 1003
Sau96I GGNCC 1 cut(s) 564
ScaI AGTACT 1 cut(s) 591
SfaNI GCATC 2 cut(s) 305, 452
SmiMI CAYNNNNRTG 1 cut(s) 752
SmlI CTYRAG 3 cut(s) 551, 585, 593
SmoI CTYRAG 3 cut(s) 551, 585, 593
SphI GCATGC 1 cut(s) 968
Sse9I AATT 5 cut(s) 50, 96, 727, 788, 970
SsiI CCGC 1 cut(s) 123
SspMI CTAG 1 cut(s) 809
TaaI ACNGT 4 cut(s) 108, 316, 485, 907
TaiI ACGT 2 cut(s) 756, 1073
TaqI TCGA 2 cut(s) 573, 769
TasI AATT 5 cut(s) 50, 96, 727, 788, 970
TatI WGTACW 1 cut(s) 589
TfiI GAWTC 9 cut(s) 59, 334, 570, 699, 719, 849, 882, 894, 1009
Tru1I TTAA 4 cut(s) 119, 171, 552, 606
Tru9I TTAA 4 cut(s) 119, 171, 552, 606
TscAI CASTG 2 cut(s) 321, 1062
TseFI GTSAC 1 cut(s) 692
Tsp45I GTSAC 1 cut(s) 692
TspDTI ATGAA 5 cut(s) 117, 464, 601, 989, 1100
TspGWI ACGGA 1 cut(s) 635
TspRI CASTG 2 cut(s) 321, 1062
Vha464I CTTAAG 1 cut(s) 551
XapI RAATTY 3 cut(s) 50, 96, 788
XbaI TCTAGA 1 cut(s) 808
XceI RCATGY 2 cut(s) 425, 968
XspI CTAG 1 cut(s) 809
ZrmI AGTACT 1 cut(s) 591
Zsp2I ATGCAT 1 cut(s) 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.