Rh7DG005100

At4g15970-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0006034
Physical Location & Seq
Reverse (-)
445643 .. 450463
4821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG005100.1

Sequence Viewer

Length: 972 bp
ATGGAGAATAACACAACAGCTGCAACACCAAAGGCTGGTGGTGTTCATCACCATTATCATCATCATCATCATCATCATCACGGATTGGTCAAGAGGATTCTAAATATTGCTCTGGTGTGTGTGGCTGTTACTCTGGCTTCCCTTCTCTTCTACATCGCTGTCTTCCCCGGCGGCGGACCTATTTATGATCCTTTGTTCTCAGCTAAATCTCAGGATCCCTTGGATGCAGTTCTGAGAAATGCATCCATGAAGGACAAGACCATAATCGTCACAACACTGAATGATGCGTGGGCAGAACCCAACTCAATATTCGATCTGTTTCTCGAGAGTTTTCGGATCGGAAACAACACGAATCGGCTGCTGAAGCATCTGGTGGTGATCTGCTTGGACCAAAAGGCATACTCTCGTTGCTTGGCTCTTCACCCTCACTGCTACCAACTCTACACTCAAGGTGCCAACTTTACCAGCGAGGCAGCTTTCATGTCCTCCGATTACTTGCACATGATGTGGAGAAGAATCCAGTTTTTGACTTCTATTCTCGAAAAAGGATACAGCTTTGTCTTTACGGATACTGACATTATGTGGCTTAGGGACCCATTCCCACAATTCTTCCCAGATGCAGACTTCCAAATTGCATGTGACTACTTCCGAGGCGATTCTTACGATGTGAACAACCTTCCGAACGGAGGATTTACCTATGTAGTCTCTAATAAACGGACCACCCAATTCTACAACTTTTGGTACTTCTCAAGGCAGGCGTATCCGAATAATCACGACCAGGACGTGCTCAACAAGATCAAATCTGATCCGTTCATCACCAGCATCGGATTGAAAATGAGATTCTTGGACACCAAATACTTTGGCGGCTTCTGTCAGCCCAGAGCATTACAATGCAGTGGAGTTGCTGAGTTTGTAGACTCTTGTCTGGAGACTGTAATCCAGAATCAGCTAAACTCTCTTTGTTCCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

323

Amino Acids

36.94

Weight (kDa)

6.75

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 120 - 294 7.2e-60 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 452
AccB7I CCANNNNNTGG 1 cut(s) 35
AccI GTMKAC 1 cut(s) 915
AciI CCGC 3 cut(s) 171, 174, 864
AclWI GGATC 5 cut(s) 182, 209, 222, 344, 800
AcuI CTGAAG 1 cut(s) 383
AfaI GTAC 1 cut(s) 743
AfiI CCNNNNNNNGG 3 cut(s) 35, 173, 686
AgsI TTSAA 1 cut(s) 832
AjiI CACGTC 1 cut(s) 784
AjnI CCWGG 1 cut(s) 777
AjuI GAANNNNNNNTTGG 2 cut(s) 293, 325
AluBI AGCT 5 cut(s) 20, 203, 476, 555, 949
AluI AGCT 5 cut(s) 20, 203, 476, 555, 949
Alw21I GWGCWC 1 cut(s) 789
Alw26I GTCTC 2 cut(s) 709, 923
AlwI GGATC 5 cut(s) 182, 209, 222, 344, 800
Ama87I CYCGRG 1 cut(s) 323
ApeKI GCWGC 3 cut(s) 20, 358, 473
AspS9I GGNCC 4 cut(s) 176, 388, 592, 717
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 4 cut(s) 41, 388, 413, 808
AvaI CYCGRG 1 cut(s) 323
AvaII GGWCC 4 cut(s) 176, 388, 592, 717
BamHI GGATCC 1 cut(s) 214
BanI GGYRCC 1 cut(s) 452
BbsI GAAGAC 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 789
BbvI GCAGC 3 cut(s) 7, 345, 485
BcgI CGANNNNNNTGC 2 cut(s) 340, 374
BciT130I CCWGG 1 cut(s) 779
BciVI GTATCC 3 cut(s) 542, 562, 771
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 709, 923
BfuI GTATCC 3 cut(s) 542, 562, 771
BisI GCNGC 5 cut(s) 21, 172, 359, 474, 865
BlsI GCNGC 5 cut(s) 22, 173, 360, 475, 866
Bme1390I CCNGG 2 cut(s) 168, 779
Bme18I GGWCC 4 cut(s) 176, 388, 592, 717
BmeT110I CYCGRG 1 cut(s) 323
BmgBI CACGTC 1 cut(s) 784
BmgT120I GGNCC 4 cut(s) 176, 388, 592, 717
BmiI GGNNCC 4 cut(s) 216, 454, 593, 594
BmrFI CCNGG 2 cut(s) 168, 779
BmsI GCATC 6 cut(s) 214, 251, 274, 376, 607, 831
BoxI GACNNNNGTC 1 cut(s) 921
BpiI GAAGAC 1 cut(s) 154
BpmI CTGGAG 1 cut(s) 947
Bpu10I CCTNAGC 1 cut(s) 587
BpuEI CTTGAG 2 cut(s) 432, 733
BpuMI CCSGG 1 cut(s) 168
BsaJI CCNNGG 3 cut(s) 166, 219, 649
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 173, 686
Bse1I ACTGG 1 cut(s) 520
BseBI CCWGG 1 cut(s) 779
BseDI CCNNGG 3 cut(s) 166, 219, 649
BseGI GGATG 2 cut(s) 229, 242
BseLI CCNNNNNNNGG 3 cut(s) 35, 173, 686
BseMII CTCAG 4 cut(s) 213, 224, 224, 897
BseNI ACTGG 1 cut(s) 520
BseXI GCAGC 3 cut(s) 7, 345, 485
BshNI GGYRCC 1 cut(s) 452
BsiHKAI GWGCWC 1 cut(s) 789
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 605
BslI CCNNNNNNNGG 3 cut(s) 35, 173, 686
BsmAI GTCTC 2 cut(s) 709, 923
BsmFI GGGAC 1 cut(s) 605
BsoBI CYCGRG 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 789
Bsp143I GATC 7 cut(s) 187, 214, 313, 336, 378, 795, 805
BspACI CCGC 3 cut(s) 171, 174, 864
BspCNI CTCAG 4 cut(s) 212, 223, 225, 898
BspLI GGNNCC 4 cut(s) 216, 454, 593, 594
BspPI GGATC 5 cut(s) 182, 209, 222, 344, 800
BspQI GCTCTTC 1 cut(s) 423
BspT107I GGYRCC 1 cut(s) 452
BsrI ACTGG 1 cut(s) 520
BssECI CCNNGG 3 cut(s) 166, 219, 649
BssMI GATC 7 cut(s) 187, 214, 313, 336, 378, 795, 805
BssT1I CCWWGG 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 779
Bst4CI ACNGT 1 cut(s) 934
Bst6I CTCTTC 2 cut(s) 152, 423
BstC8I GCNNGC 1 cut(s) 756
BstDEI CTNAG 5 cut(s) 199, 210, 233, 587, 906
BstF5I GGATG 2 cut(s) 229, 242
BstKTI GATC 7 cut(s) 190, 217, 316, 339, 381, 798, 808
BstMAI GTCTC 2 cut(s) 709, 923
BstMBI GATC 7 cut(s) 187, 214, 313, 336, 378, 795, 805
BstMWI GCNNNNNNNGC 1 cut(s) 364
BstNI CCWGG 1 cut(s) 779
BstNSI RCATGY 1 cut(s) 639
BstPAI GACNNNNGTC 1 cut(s) 921
BstSCI CCNGG 2 cut(s) 166, 777
BstV1I GCAGC 3 cut(s) 7, 345, 485
BstV2I GAAGAC 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuI GTATCC 3 cut(s) 542, 562, 771
BtgZI GCGATG 1 cut(s) 139
BtrI CACGTC 1 cut(s) 784
BtsCI GGATG 2 cut(s) 229, 242
BtsI GCAGTG 2 cut(s) 427, 901
BtsIMutI CAGTG 3 cut(s) 275, 427, 901
Cac8I GCNNGC 1 cut(s) 756
Cfr13I GGNCC 4 cut(s) 176, 388, 592, 717
Csp6I GTAC 1 cut(s) 742
CviAII CATG 4 cut(s) 247, 481, 502, 636
CviQI GTAC 1 cut(s) 742
DdeI CTNAG 5 cut(s) 199, 210, 233, 587, 906
DpnI GATC 7 cut(s) 189, 216, 315, 338, 380, 797, 807
DpnII GATC 7 cut(s) 187, 214, 313, 336, 378, 795, 805
Eam1104I CTCTTC 2 cut(s) 152, 423
EarI CTCTTC 2 cut(s) 152, 423
EciI GGCGGA 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 219
Eco47I GGWCC 4 cut(s) 176, 388, 592, 717
Eco57I CTGAAG 1 cut(s) 383
Eco88I CYCGRG 1 cut(s) 323
EcoO109I RGGNCCY 1 cut(s) 592
EcoRII CCWGG 1 cut(s) 777
EcoT14I CCWWGG 1 cut(s) 219
EcoT22I ATGCAT 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 4 cut(s) 250, 484, 505, 639
FaiI YATR 9 cut(s) 186, 248, 263, 400, 482, 503, 581, 637, 699
FaqI GGGAC 1 cut(s) 605
FatI CATG 4 cut(s) 246, 480, 501, 635
FblI GTMKAC 1 cut(s) 915
Fnu4HI GCNGC 5 cut(s) 21, 172, 359, 474, 865
FokI GGATG 2 cut(s) 229, 236
Fsp4HI GCNGC 5 cut(s) 21, 172, 359, 474, 865
GluI GCNGC 5 cut(s) 21, 172, 359, 474, 865
GsuI CTGGAG 1 cut(s) 947
HapII CCGG 1 cut(s) 168
Hin1II CATG 4 cut(s) 250, 484, 505, 639
HinfI GANTC 7 cut(s) 97, 352, 516, 656, 840, 917, 943
HpaII CCGG 1 cut(s) 168
HphI GGTGA 4 cut(s) 41, 388, 413, 808
Hpy166II GTNNAC 2 cut(s) 670, 916
Hpy188I TCNGA 9 cut(s) 234, 336, 341, 490, 650, 681, 765, 805, 827
Hpy188III TCNNGA 8 cut(s) 91, 212, 323, 325, 539, 773, 926, 940
Hpy8I GTNNAC 2 cut(s) 670, 916
HpyAV CCTTC 3 cut(s) 152, 244, 686
HpyCH4III ACNGT 1 cut(s) 934
HpyCH4IV ACGT 1 cut(s) 783
HpyCH4V TGCA 7 cut(s) 23, 227, 242, 499, 620, 635, 894
HpyF10VI GCNNNNNNNGC 1 cut(s) 364
HpyF3I CTNAG 5 cut(s) 199, 210, 233, 587, 906
HpySE526I ACGT 1 cut(s) 783
Hsp92II CATG 4 cut(s) 250, 484, 505, 639
KflI GGGWCCC 1 cut(s) 592
Kzo9I GATC 7 cut(s) 187, 214, 313, 336, 378, 795, 805
LguI GCTCTTC 1 cut(s) 423
Lsp1109I GCAGC 3 cut(s) 7, 345, 485
LweI GCATC 6 cut(s) 214, 251, 274, 376, 607, 831
MaeII ACGT 1 cut(s) 783
MaeIII GTNAC 3 cut(s) 127, 268, 638
MalI GATC 7 cut(s) 189, 216, 315, 338, 380, 797, 807
MboI GATC 7 cut(s) 187, 214, 313, 336, 378, 795, 805
MboII GAAGA 5 cut(s) 139, 154, 410, 525, 601
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 789
MluCI AATT 3 cut(s) 605, 630, 725
MlyI GAGTC 1 cut(s) 911
MnlI CCTC 6 cut(s) 87, 435, 463, 496, 644, 680
Mph1103I ATGCAT 1 cut(s) 244
MseI TTAA 1 cut(s) 970
MslI CAYNNNNRTG 1 cut(s) 889
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 2 cut(s) 168, 779
MvaI CCWGG 1 cut(s) 779
MwoI GCNNNNNNNGC 1 cut(s) 364
NciI CCSGG 1 cut(s) 168
NdeII GATC 7 cut(s) 187, 214, 313, 336, 378, 795, 805
NlaIII CATG 4 cut(s) 250, 484, 505, 639
NlaIV GGNNCC 4 cut(s) 216, 454, 593, 594
NmuCI GTSAC 2 cut(s) 268, 638
NsiI ATGCAT 1 cut(s) 244
NspI RCATGY 1 cut(s) 639
PaeR7I CTCGAG 1 cut(s) 323
PciSI GCTCTTC 1 cut(s) 423
PcsI WCGNNNNNNNCGW 1 cut(s) 780
PfeI GAWTC 6 cut(s) 97, 352, 516, 656, 840, 943
PflMI CCANNNNNTGG 1 cut(s) 35
PkrI GCNGC 5 cut(s) 22, 173, 360, 475, 866
PleI GAGTC 1 cut(s) 911
PpsI GAGTC 1 cut(s) 911
PpuMI RGGWCCY 1 cut(s) 592
PshAI GACNNNNGTC 1 cut(s) 921
Psp5II RGGWCCY 1 cut(s) 592
Psp6I CCWGG 1 cut(s) 777
PspGI CCWGG 1 cut(s) 777
PspN4I GGNNCC 4 cut(s) 216, 454, 593, 594
PspPI GGNCC 4 cut(s) 176, 388, 592, 717
PspPPI RGGWCCY 1 cut(s) 592
PsuI RGATCY 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 1 cut(s) 743
RsaNI GTAC 1 cut(s) 742
RseI CAYNNNNRTG 1 cut(s) 889
SapI GCTCTTC 1 cut(s) 423
SaqAI TTAA 1 cut(s) 970
SatI GCNGC 5 cut(s) 21, 172, 359, 474, 865
Sau3AI GATC 7 cut(s) 187, 214, 313, 336, 378, 795, 805
Sau96I GGNCC 4 cut(s) 176, 388, 592, 717
SchI GAGTC 1 cut(s) 911
ScrFI CCNGG 2 cut(s) 168, 779
SduI GDGCHC 1 cut(s) 789
SfaNI GCATC 6 cut(s) 214, 251, 274, 376, 607, 831
Sfr274I CTCGAG 1 cut(s) 323
SinI GGWCC 4 cut(s) 176, 388, 592, 717
SlaI CTCGAG 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 889
SmlI CTYRAG 3 cut(s) 323, 447, 748
SmoI CTYRAG 3 cut(s) 323, 447, 748
Sse9I AATT 3 cut(s) 605, 630, 725
SsiI CCGC 3 cut(s) 171, 174, 864
SspI AATATT 2 cut(s) 106, 309
StyD4I CCNGG 2 cut(s) 166, 777
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 934
TaiI ACGT 1 cut(s) 786
TaqI TCGA 3 cut(s) 312, 324, 540
TasI AATT 3 cut(s) 605, 630, 725
TauI GCSGC 2 cut(s) 174, 867
TfiI GAWTC 6 cut(s) 97, 352, 516, 656, 840, 943
Tru1I TTAA 1 cut(s) 970
Tru9I TTAA 1 cut(s) 970
TscAI CASTG 3 cut(s) 282, 434, 901
TseFI GTSAC 2 cut(s) 268, 638
TseI GCWGC 3 cut(s) 20, 358, 473
Tsp45I GTSAC 2 cut(s) 268, 638
TspDTI ATGAA 4 cut(s) 35, 263, 469, 802
TspGWI ACGGA 5 cut(s) 96, 581, 699, 730, 798
TspRI CASTG 3 cut(s) 282, 434, 901
Van91I CCANNNNNTGG 1 cut(s) 35
VpaK11BI GGWCC 4 cut(s) 176, 388, 592, 717
XceI RCATGY 1 cut(s) 639
XhoI CTCGAG 1 cut(s) 323
XmiI GTMKAC 1 cut(s) 915
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.