Rh7CG005400

At4g15970-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0006034
Physical Location & Seq
Reverse (-)
439909 .. 441270
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG005400.1

Sequence Viewer

Length: 936 bp
ATGATGATGATACAGGATCCCTTGGATGCAGTTCTGAGAAATGCATCCATGAAGGACAAGACCATAATCGTCACAACACTGAATGATGCGTGGGCAGAACCCAACTCAATATTCGATCTGTTTCTCGAGAGTTTTCGGATCGGAAACAACACGAATCGGCTGCTGAAGCATCTGGTGGTGATCTGCTTGGACCAAAAGGCATACTCTCGTTGCTTGGCTCTTCACCCTCACTGCTACCAACTCTACACTCAAGGTGCCAACTTTACCAGCGAGGCAGCTTTCATGTCCTCCGATTACTTGCACATGATGTGGAGAAGAATCCAGTTTTTGACTTCTATTCTCGAAAAAGGATACAGCTTTGTCTTTACGGATACTGACATTATGTGGCTTAGGGACCCATTCCCACAATTCTTCCCAGATGCAGACTTCCAAATTGCATGTGACTACTTCCGAGGCGATTCTTACGATGTGAACAACCTTCCGAACGGAGGATTTACCTATGTAGTCTCTAATAAACGGACCACCCAATTCTACAACTTTTGGTACTTCTCAAGGCAGGCGTATCCGAATAATCACGACCAGGACGTGCTCAACAAGATCAAATCTGATCCGTTCATCACCAGCATCGGATTGAAAATGAGATTCTTGGACACCAAATACTTTGGTGGCTTCTGTCAGCCCAGTAAAGATTTAAACCTGGTTTGCACAATGCACGCTAATTGCTGTGTTGGTCTCGATAACAAAGTCAATGACCTCAAAATTCTGCTTCAAGATTGGAGAAATTACGTGGCATTGCCTTCTCCTTCTTCATCTTCATCTTCTTCCGGTCCTACTTCTAATACCACCACGCCTCCAACAACTATGCCCTCATGGACCGTTCCACAGAACTGCAGTACTTCCTTCCAACGCCAACGCCACGGCCGGCACTTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

311

Amino Acids

35.83

Weight (kDa)

7.57

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 54 - 252 3.6e-69 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 254
AclWI GGATC 4 cut(s) 11, 24, 146, 602
AcoI YGGCCR 1 cut(s) 919
AcsI RAATTY 1 cut(s) 759
AcuI CTGAAG 1 cut(s) 185
AfaI GTAC 2 cut(s) 545, 895
AfiI CCNNNNNNNGG 1 cut(s) 488
AgsI TTSAA 2 cut(s) 634, 770
AjiI CACGTC 1 cut(s) 586
AjnI CCWGG 2 cut(s) 579, 696
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AluBI AGCT 2 cut(s) 278, 357
AluI AGCT 2 cut(s) 278, 357
Alw21I GWGCWC 1 cut(s) 591
Alw26I GTCTC 2 cut(s) 511, 737
AlwI GGATC 4 cut(s) 11, 24, 146, 602
Ama87I CYCGRG 1 cut(s) 125
AoxI GGCC 1 cut(s) 919
ApeKI GCWGC 2 cut(s) 160, 275
ApoI RAATTY 1 cut(s) 759
AspS9I GGNCC 5 cut(s) 190, 394, 519, 827, 873
AsuHPI GGTGA 3 cut(s) 190, 215, 610
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 5 cut(s) 190, 394, 519, 827, 873
BamHI GGATCC 1 cut(s) 16
BanI GGYRCC 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 591
BbvI GCAGC 2 cut(s) 147, 287
BceAI ACGGC 1 cut(s) 934
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BciT130I CCWGG 2 cut(s) 581, 698
BciVI GTATCC 3 cut(s) 344, 364, 573
BcoDI GTCTC 2 cut(s) 511, 737
BfmI CTRYAG 1 cut(s) 889
BfuI GTATCC 3 cut(s) 344, 364, 573
BisI GCNGC 2 cut(s) 161, 276
BlsI GCNGC 2 cut(s) 162, 277
BmcAI AGTACT 1 cut(s) 895
Bme1390I CCNGG 2 cut(s) 581, 698
Bme18I GGWCC 5 cut(s) 190, 394, 519, 827, 873
BmeT110I CYCGRG 1 cut(s) 125
BmgBI CACGTC 1 cut(s) 586
BmgT120I GGNCC 5 cut(s) 190, 394, 519, 827, 873
BmiI GGNNCC 4 cut(s) 18, 256, 395, 396
BmrFI CCNGG 2 cut(s) 581, 698
BmrI ACTGGG 1 cut(s) 675
BmsI GCATC 6 cut(s) 16, 53, 76, 178, 409, 633
BmuI ACTGGG 1 cut(s) 675
Bpu10I CCTNAGC 1 cut(s) 389
BpuEI CTTGAG 2 cut(s) 234, 535
BsaAI YACGTR 1 cut(s) 787
BsaI GGTCTC 1 cut(s) 737
BsaJI CCNNGG 3 cut(s) 21, 451, 916
BsaWI WCCGGW 1 cut(s) 824
BsaXI ACNNNNNCTCC 2 cut(s) 835, 865
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse118I RCCGGY 1 cut(s) 921
Bse1I ACTGG 2 cut(s) 322, 681
Bse3DI GCAATG 1 cut(s) 791
BseBI CCWGG 2 cut(s) 581, 698
BseDI CCNNGG 3 cut(s) 21, 451, 916
BseGI GGATG 2 cut(s) 31, 44
BseLI CCNNNNNNNGG 1 cut(s) 488
BseMI GCAATG 1 cut(s) 791
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 2 cut(s) 322, 681
BseX3I CGGCCG 1 cut(s) 919
BseXI GCAGC 2 cut(s) 147, 287
Bsh1285I CGRYCG 1 cut(s) 922
BshFI GGCC 1 cut(s) 921
BshNI GGYRCC 1 cut(s) 254
BsiEI CGRYCG 1 cut(s) 922
BsiHKAI GWGCWC 1 cut(s) 591
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 2 cut(s) 825, 922
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 1 cut(s) 488
BsmAI GTCTC 2 cut(s) 511, 737
BsmFI GGGAC 1 cut(s) 407
BsnI GGCC 1 cut(s) 921
Bso31I GGTCTC 1 cut(s) 737
BsoBI CYCGRG 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 591
Bsp143I GATC 6 cut(s) 16, 115, 138, 180, 597, 607
BspANI GGCC 1 cut(s) 921
BspCNI CTCAG 1 cut(s) 27
BspLI GGNNCC 4 cut(s) 18, 256, 395, 396
BspMAI CTGCAG 1 cut(s) 893
BspPI GGATC 4 cut(s) 11, 24, 146, 602
BspQI GCTCTTC 1 cut(s) 225
BspT107I GGYRCC 1 cut(s) 254
BspTNI GGTCTC 1 cut(s) 737
BsrDI GCAATG 1 cut(s) 791
BsrFI RCCGGY 1 cut(s) 921
BsrI ACTGG 2 cut(s) 322, 681
BssAI RCCGGY 1 cut(s) 921
BssECI CCNNGG 3 cut(s) 21, 451, 916
BssMI GATC 6 cut(s) 16, 115, 138, 180, 597, 607
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 2 cut(s) 581, 698
Bst4CI ACNGT 1 cut(s) 877
Bst6I CTCTTC 1 cut(s) 225
BstBAI YACGTR 1 cut(s) 787
BstC8I GCNNGC 3 cut(s) 558, 714, 923
BstDEI CTNAG 2 cut(s) 35, 389
BstDSI CCRYGG 1 cut(s) 916
BstF5I GGATG 2 cut(s) 31, 44
BstKTI GATC 6 cut(s) 19, 118, 141, 183, 600, 610
BstMAI GTCTC 2 cut(s) 511, 737
BstMBI GATC 6 cut(s) 16, 115, 138, 180, 597, 607
BstMCI CGRYCG 1 cut(s) 922
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNI CCWGG 2 cut(s) 581, 698
BstNSI RCATGY 1 cut(s) 441
BstSCI CCNGG 2 cut(s) 579, 696
BstSFI CTRYAG 1 cut(s) 889
BstV1I GCAGC 2 cut(s) 147, 287
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BstZI CGGCCG 1 cut(s) 919
BsuI GTATCC 3 cut(s) 344, 364, 573
BsuRI GGCC 1 cut(s) 921
BtgI CCRYGG 1 cut(s) 916
BtrI CACGTC 1 cut(s) 586
BtsCI GGATG 2 cut(s) 31, 44
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 2 cut(s) 77, 229
Cac8I GCNNGC 3 cut(s) 558, 714, 923
Cfr10I RCCGGY 1 cut(s) 921
Cfr13I GGNCC 5 cut(s) 190, 394, 519, 827, 873
CsiI ACCWGGT 1 cut(s) 696
Csp6I GTAC 2 cut(s) 544, 894
CviAII CATG 5 cut(s) 49, 283, 304, 438, 870
CviJI RGCY 8 cut(s) 160, 218, 278, 357, 388, 669, 679, 921
CviKI_1 RGCY 8 cut(s) 160, 218, 278, 357, 388, 669, 679, 921
CviQI GTAC 2 cut(s) 544, 894
DdeI CTNAG 2 cut(s) 35, 389
DpnI GATC 6 cut(s) 18, 117, 140, 182, 599, 609
DpnII GATC 6 cut(s) 16, 115, 138, 180, 597, 607
DraI TTTAAA 1 cut(s) 693
EaeI YGGCCR 1 cut(s) 919
EagI CGGCCG 1 cut(s) 919
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
EclXI CGGCCG 1 cut(s) 919
Eco130I CCWWGG 1 cut(s) 21
Eco31I GGTCTC 1 cut(s) 737
Eco47I GGWCC 5 cut(s) 190, 394, 519, 827, 873
Eco52I CGGCCG 1 cut(s) 919
Eco57I CTGAAG 1 cut(s) 185
Eco88I CYCGRG 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 394
EcoRII CCWGG 2 cut(s) 579, 696
EcoT14I CCWWGG 1 cut(s) 21
EcoT22I ATGCAT 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 5 cut(s) 52, 286, 307, 441, 873
FaqI GGGAC 1 cut(s) 407
FatI CATG 5 cut(s) 48, 282, 303, 437, 869
Fnu4HI GCNGC 2 cut(s) 161, 276
FokI GGATG 2 cut(s) 31, 38
Fsp4HI GCNGC 2 cut(s) 161, 276
GluI GCNGC 2 cut(s) 161, 276
HaeIII GGCC 1 cut(s) 921
HapII CCGG 2 cut(s) 825, 922
Hin1II CATG 5 cut(s) 52, 286, 307, 441, 873
HinfI GANTC 4 cut(s) 154, 318, 458, 642
HpaII CCGG 2 cut(s) 825, 922
HphI GGTGA 3 cut(s) 190, 215, 610
Hpy166II GTNNAC 1 cut(s) 472
Hpy188I TCNGA 9 cut(s) 36, 138, 143, 292, 452, 483, 567, 607, 629
Hpy188III TCNNGA 6 cut(s) 125, 127, 341, 575, 734, 770
Hpy8I GTNNAC 1 cut(s) 472
HpyAV CCTTC 5 cut(s) 46, 488, 807, 813, 910
HpyCH4III ACNGT 1 cut(s) 877
HpyCH4IV ACGT 2 cut(s) 585, 786
HpyCH4V TGCA 8 cut(s) 29, 44, 301, 422, 437, 705, 712, 891
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 2 cut(s) 35, 389
HpySE526I ACGT 2 cut(s) 585, 786
Hsp92II CATG 5 cut(s) 52, 286, 307, 441, 873
KflI GGGWCCC 1 cut(s) 394
KroI GCCGGC 1 cut(s) 921
KroNI GCCGGC 1 cut(s) 923
Kzo9I GATC 6 cut(s) 16, 115, 138, 180, 597, 607
LguI GCTCTTC 1 cut(s) 225
Lsp1109I GCAGC 2 cut(s) 147, 287
LweI GCATC 6 cut(s) 16, 53, 76, 178, 409, 633
MabI ACCWGGT 1 cut(s) 696
MaeII ACGT 2 cut(s) 585, 786
MaeIII GTNAC 2 cut(s) 70, 440
MalI GATC 6 cut(s) 18, 117, 140, 182, 599, 609
MboI GATC 6 cut(s) 16, 115, 138, 180, 597, 607
MboII GAAGA 7 cut(s) 212, 327, 403, 798, 804, 810, 813
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 591
MluCI AATT 6 cut(s) 407, 432, 527, 718, 759, 781
MmeI TCCRAC 2 cut(s) 878, 928
MnlI CCTC 8 cut(s) 237, 265, 298, 446, 482, 764, 861, 877
Mph1103I ATGCAT 1 cut(s) 46
MroNI GCCGGC 1 cut(s) 921
MseI TTAA 1 cut(s) 692
MspI CCGG 2 cut(s) 825, 922
MspR9I CCNGG 2 cut(s) 581, 698
MvaI CCWGG 2 cut(s) 581, 698
MwoI GCNNNNNNNGC 1 cut(s) 166
NaeI GCCGGC 1 cut(s) 923
NdeII GATC 6 cut(s) 16, 115, 138, 180, 597, 607
NgoMIV GCCGGC 1 cut(s) 921
NlaIII CATG 5 cut(s) 52, 286, 307, 441, 873
NlaIV GGNNCC 4 cut(s) 18, 256, 395, 396
NmuCI GTSAC 2 cut(s) 70, 440
NsiI ATGCAT 1 cut(s) 46
NspI RCATGY 1 cut(s) 441
PaeR7I CTCGAG 1 cut(s) 125
PciSI GCTCTTC 1 cut(s) 225
PcsI WCGNNNNNNNCGW 1 cut(s) 582
PdiI GCCGGC 1 cut(s) 923
PfeI GAWTC 4 cut(s) 154, 318, 458, 642
PkrI GCNGC 2 cut(s) 162, 277
Ppu21I YACGTR 1 cut(s) 787
PpuMI RGGWCCY 1 cut(s) 394
Psp5II RGGWCCY 1 cut(s) 394
Psp6I CCWGG 2 cut(s) 579, 696
PspGI CCWGG 2 cut(s) 579, 696
PspN4I GGNNCC 4 cut(s) 18, 256, 395, 396
PspPI GGNCC 5 cut(s) 190, 394, 519, 827, 873
PspPPI RGGWCCY 1 cut(s) 394
PstI CTGCAG 1 cut(s) 893
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 2 cut(s) 545, 895
RsaNI GTAC 2 cut(s) 544, 894
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 1 cut(s) 692
SatI GCNGC 2 cut(s) 161, 276
Sau3AI GATC 6 cut(s) 16, 115, 138, 180, 597, 607
Sau96I GGNCC 5 cut(s) 190, 394, 519, 827, 873
ScaI AGTACT 1 cut(s) 895
ScrFI CCNGG 2 cut(s) 581, 698
SduI GDGCHC 1 cut(s) 591
SetI ASST 9 cut(s) 256, 280, 359, 480, 500, 588, 699, 756, 789
SexAI ACCWGGT 1 cut(s) 696
SfaNI GCATC 6 cut(s) 16, 53, 76, 178, 409, 633
SfcI CTRYAG 1 cut(s) 889
Sfr274I CTCGAG 1 cut(s) 125
SinI GGWCC 5 cut(s) 190, 394, 519, 827, 873
SlaI CTCGAG 1 cut(s) 125
SmlI CTYRAG 3 cut(s) 125, 249, 550
SmoI CTYRAG 3 cut(s) 125, 249, 550
Sse9I AATT 6 cut(s) 407, 432, 527, 718, 759, 781
SspI AATATT 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 579, 696
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 877
TaiI ACGT 2 cut(s) 588, 789
TaqI TCGA 4 cut(s) 114, 126, 342, 735
TasI AATT 6 cut(s) 407, 432, 527, 718, 759, 781
TatI WGTACW 1 cut(s) 893
TfiI GAWTC 4 cut(s) 154, 318, 458, 642
Tru1I TTAA 1 cut(s) 692
Tru9I TTAA 1 cut(s) 692
TscAI CASTG 2 cut(s) 84, 236
TseFI GTSAC 2 cut(s) 70, 440
TseI GCWGC 2 cut(s) 160, 275
Tsp45I GTSAC 2 cut(s) 70, 440
TspDTI ATGAA 5 cut(s) 65, 271, 604, 798, 804
TspGWI ACGGA 4 cut(s) 383, 501, 532, 600
TspRI CASTG 2 cut(s) 84, 236
VpaK11BI GGWCC 5 cut(s) 190, 394, 519, 827, 873
XapI RAATTY 1 cut(s) 759
XceI RCATGY 1 cut(s) 441
XhoI CTCGAG 1 cut(s) 125
ZrmI AGTACT 1 cut(s) 895
Zsp2I ATGCAT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.