Rh7BG005300

At4g15970-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0006034
Physical Location & Seq
Reverse (-)
332184 .. 334869
2686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG005300.1

Sequence Viewer

Length: 1098 bp
ATGGAGAATAACACAAAAGCTGCAACACCAAAGGCTGGTGGTGTTCATCACCATTATCATCATCATGGATTGGTCAAGAGGATTCTAAATATTGCTCTGGTGTGTGTGGCTGTTACTCTGGCTTCCCTTCTCTTCTACATCGCTGTCTTCCCCGGCGGCGGACCTATTTATGATCCTTTGTTCTCAGCTAAATCTCAGGATCCCTTGGATGCAGTTCTGAGAAATGCATCCATGAAGGACAAGACCATAATCGTCACAACACTGAATGATGCGTGGGCAGAACCCAACTCAATATTCGATCTGTTTCTCGAGAGTTTTCGGATCGGAAACAACACGAATCGGCTGCTGAAGCATCTGGTGGTGATCTGCTTGGACCGAAAGGCATACGCTCGTTGCTTGGCTCTTCACCCTCATTGCTACCAACTCTACACTCAAGGTGCCAACTTTACCAGCGAGGCAGCTTTCATGTCCTCCGATTACTTGCACATGATGTGGAGAAGAATCCAGTTTTTGACTTCTATTCTCGAAAAAGGATACAGCTTTGTCTTTACGGACACTGACATTATGTGGCTTAGGGACCCATTCCCACAATTCTTCCCAGATGCAGACTTCCAAATTGCATGTGACTACTTCCGAGGCGATTCGTACGATGTGAACAACCTTCCGAACGGAGGATTTACCTATGTAGTCTCTAATAAACGGACCACCCAATTCTACAACTTTTGGTACTTCTCAAGGCAGGCGTATCCGAATAATCATGACCAGGACGTGCTCAACAAGATCAAATCTGATCCGTTCATCACCAGCATCGGATTGAAAATGAGATTCTTGGACACCAAATACTTTGGCGGCTTCTGTCAGCCCAGTAAAGATTTAAACCTGATTGGAGAAATTACGTGGCATTGCCTCCTTCTCCTTCTTCTTCTTCATCTTCATCTTCTTCCGGTCCTACTTCTAATACCACCACGCCTCCAACAACTATGCCCTCATGGACCGTTCCACAGAACTGCAGTACTTCCTTCCAACGCCAACGCCACGGCAGGCACTTGTTGTGACCCGAGATGGACCACAACTTCTGTAGATTTGTTTAAAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

365

Amino Acids

41.58

Weight (kDa)

8.27

Isoelectric Point (pI)

37.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 115 - 294 1.8e-60 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 437
AccB7I CCANNNNNTGG 1 cut(s) 35
AciI CCGC 3 cut(s) 156, 159, 849
AclWI GGATC 5 cut(s) 167, 194, 207, 329, 785
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 3 cut(s) 647, 728, 1014
AfiI CCNNNNNNNGG 3 cut(s) 35, 158, 671
AgsI TTSAA 1 cut(s) 817
AjiI CACGTC 1 cut(s) 769
AjnI CCWGG 1 cut(s) 762
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AluBI AGCT 4 cut(s) 20, 188, 461, 540
AluI AGCT 4 cut(s) 20, 188, 461, 540
Alw21I GWGCWC 1 cut(s) 774
Alw26I GTCTC 1 cut(s) 694
AlwI GGATC 5 cut(s) 167, 194, 207, 329, 785
Ama87I CYCGRG 2 cut(s) 308, 1057
ApeKI GCWGC 3 cut(s) 20, 343, 458
AspS9I GGNCC 7 cut(s) 161, 373, 577, 702, 946, 992, 1065
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 4 cut(s) 41, 373, 398, 793
AvaI CYCGRG 2 cut(s) 308, 1057
AvaII GGWCC 7 cut(s) 161, 373, 577, 702, 946, 992, 1065
BamHI GGATCC 1 cut(s) 199
BanI GGYRCC 1 cut(s) 437
BbsI GAAGAC 1 cut(s) 139
Bbv12I GWGCWC 1 cut(s) 774
BbvI GCAGC 3 cut(s) 7, 330, 470
BccI CCATC 1 cut(s) 1056
BceAI ACGGC 1 cut(s) 1053
BcgI CGANNNNNNTGC 2 cut(s) 325, 359
BciT130I CCWGG 1 cut(s) 764
BciVI GTATCC 2 cut(s) 527, 756
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 694
BfmI CTRYAG 2 cut(s) 1008, 1077
BfuI GTATCC 2 cut(s) 527, 756
BisI GCNGC 5 cut(s) 21, 157, 344, 459, 850
BlsI GCNGC 5 cut(s) 22, 158, 345, 460, 851
BmcAI AGTACT 1 cut(s) 1014
Bme1390I CCNGG 2 cut(s) 153, 764
Bme18I GGWCC 7 cut(s) 161, 373, 577, 702, 946, 992, 1065
BmeT110I CYCGRG 2 cut(s) 308, 1057
BmgBI CACGTC 1 cut(s) 769
BmgT120I GGNCC 7 cut(s) 161, 373, 577, 702, 946, 992, 1065
BmiI GGNNCC 4 cut(s) 201, 439, 578, 579
BmrFI CCNGG 2 cut(s) 153, 764
BmrI ACTGGG 1 cut(s) 858
BmsI GCATC 6 cut(s) 199, 236, 259, 361, 592, 816
BmuI ACTGGG 1 cut(s) 858
BpiI GAAGAC 1 cut(s) 139
Bpu10I CCTNAGC 1 cut(s) 572
BpuEI CTTGAG 2 cut(s) 417, 718
BpuMI CCSGG 1 cut(s) 153
BsaAI YACGTR 1 cut(s) 897
BsaJI CCNNGG 4 cut(s) 151, 204, 634, 1035
BsaWI WCCGGW 1 cut(s) 943
BsaXI ACNNNNNCTCC 2 cut(s) 954, 984
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 158, 671
Bse1I ACTGG 2 cut(s) 505, 864
Bse3DI GCAATG 2 cut(s) 412, 901
BseBI CCWGG 1 cut(s) 764
BseDI CCNNGG 4 cut(s) 151, 204, 634, 1035
BseGI GGATG 2 cut(s) 214, 227
BseLI CCNNNNNNNGG 3 cut(s) 35, 158, 671
BseMI GCAATG 2 cut(s) 412, 901
BseMII CTCAG 3 cut(s) 198, 209, 209
BseNI ACTGG 2 cut(s) 505, 864
BseXI GCAGC 3 cut(s) 7, 330, 470
BshNI GGYRCC 1 cut(s) 437
BsiHKAI GWGCWC 1 cut(s) 774
BsiHKCI CYCGRG 2 cut(s) 308, 1057
BsiSI CCGG 2 cut(s) 153, 944
BsiWI CGTACG 1 cut(s) 645
BslFI GGGAC 1 cut(s) 590
BslI CCNNNNNNNGG 3 cut(s) 35, 158, 671
BsmAI GTCTC 1 cut(s) 694
BsmFI GGGAC 1 cut(s) 590
BsoBI CYCGRG 2 cut(s) 308, 1057
Bsp1286I GDGCHC 1 cut(s) 774
Bsp143I GATC 7 cut(s) 172, 199, 298, 321, 363, 780, 790
BspACI CCGC 3 cut(s) 156, 159, 849
BspCNI CTCAG 3 cut(s) 197, 208, 210
BspHI TCATGA 1 cut(s) 757
BspLI GGNNCC 4 cut(s) 201, 439, 578, 579
BspMAI CTGCAG 1 cut(s) 1012
BspPI GGATC 5 cut(s) 167, 194, 207, 329, 785
BspQI GCTCTTC 1 cut(s) 408
BspT107I GGYRCC 1 cut(s) 437
BsrDI GCAATG 2 cut(s) 412, 901
BsrI ACTGG 2 cut(s) 505, 864
BssECI CCNNGG 4 cut(s) 151, 204, 634, 1035
BssMI GATC 7 cut(s) 172, 199, 298, 321, 363, 780, 790
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 764
Bst4CI ACNGT 1 cut(s) 996
Bst6I CTCTTC 2 cut(s) 137, 408
BstBAI YACGTR 1 cut(s) 897
BstC8I GCNNGC 2 cut(s) 741, 1042
BstDEI CTNAG 4 cut(s) 184, 195, 218, 572
BstDSI CCRYGG 1 cut(s) 1035
BstF5I GGATG 2 cut(s) 214, 227
BstKTI GATC 7 cut(s) 175, 202, 301, 324, 366, 783, 793
BstMAI GTCTC 1 cut(s) 694
BstMBI GATC 7 cut(s) 172, 199, 298, 321, 363, 780, 790
BstMWI GCNNNNNNNGC 1 cut(s) 349
BstNI CCWGG 1 cut(s) 764
BstNSI RCATGY 1 cut(s) 624
BstSCI CCNGG 2 cut(s) 151, 762
BstSFI CTRYAG 2 cut(s) 1008, 1077
BstV1I GCAGC 3 cut(s) 7, 330, 470
BstV2I GAAGAC 1 cut(s) 139
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BsuI GTATCC 2 cut(s) 527, 756
BtgI CCRYGG 1 cut(s) 1035
BtgZI GCGATG 1 cut(s) 124
BtrI CACGTC 1 cut(s) 769
BtsCI GGATG 2 cut(s) 214, 227
BtsIMutI CAGTG 2 cut(s) 260, 555
Cac8I GCNNGC 2 cut(s) 741, 1042
CciI TCATGA 1 cut(s) 757
Cfr13I GGNCC 7 cut(s) 161, 373, 577, 702, 946, 992, 1065
Csp6I GTAC 3 cut(s) 646, 727, 1013
CviAII CATG 7 cut(s) 65, 232, 466, 487, 621, 758, 989
CviQI GTAC 3 cut(s) 646, 727, 1013
DdeI CTNAG 4 cut(s) 184, 195, 218, 572
DpnI GATC 7 cut(s) 174, 201, 300, 323, 365, 782, 792
DpnII GATC 7 cut(s) 172, 199, 298, 321, 363, 780, 790
DraI TTTAAA 2 cut(s) 876, 1090
Eam1104I CTCTTC 2 cut(s) 137, 408
EarI CTCTTC 2 cut(s) 137, 408
EciI GGCGGA 1 cut(s) 174
Eco130I CCWWGG 1 cut(s) 204
Eco47I GGWCC 7 cut(s) 161, 373, 577, 702, 946, 992, 1065
Eco57I CTGAAG 1 cut(s) 368
Eco88I CYCGRG 2 cut(s) 308, 1057
EcoO109I RGGNCCY 1 cut(s) 577
EcoRII CCWGG 1 cut(s) 762
EcoT14I CCWWGG 1 cut(s) 204
EcoT22I ATGCAT 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 7 cut(s) 68, 235, 469, 490, 624, 761, 992
FaqI GGGAC 1 cut(s) 590
FatI CATG 7 cut(s) 64, 231, 465, 486, 620, 757, 988
Fnu4HI GCNGC 5 cut(s) 21, 157, 344, 459, 850
FokI GGATG 2 cut(s) 214, 221
Fsp4HI GCNGC 5 cut(s) 21, 157, 344, 459, 850
GluI GCNGC 5 cut(s) 21, 157, 344, 459, 850
HapII CCGG 2 cut(s) 153, 944
Hin1II CATG 7 cut(s) 68, 235, 469, 490, 624, 761, 992
HinfI GANTC 5 cut(s) 82, 337, 501, 641, 825
HpaII CCGG 2 cut(s) 153, 944
HphI GGTGA 4 cut(s) 41, 373, 398, 793
Hpy166II GTNNAC 1 cut(s) 655
Hpy188I TCNGA 9 cut(s) 219, 321, 326, 475, 635, 666, 750, 790, 812
Hpy188III TCNNGA 6 cut(s) 76, 197, 308, 310, 524, 758
Hpy8I GTNNAC 1 cut(s) 655
HpyAV CCTTC 6 cut(s) 137, 229, 671, 920, 926, 1029
HpyCH4III ACNGT 1 cut(s) 996
HpyCH4IV ACGT 2 cut(s) 768, 896
HpyCH4V TGCA 7 cut(s) 23, 212, 227, 484, 605, 620, 1010
HpyF10VI GCNNNNNNNGC 1 cut(s) 349
HpyF3I CTNAG 4 cut(s) 184, 195, 218, 572
HpySE526I ACGT 2 cut(s) 768, 896
Hsp92II CATG 7 cut(s) 68, 235, 469, 490, 624, 761, 992
KflI GGGWCCC 1 cut(s) 577
Kzo9I GATC 7 cut(s) 172, 199, 298, 321, 363, 780, 790
LguI GCTCTTC 1 cut(s) 408
Lsp1109I GCAGC 3 cut(s) 7, 330, 470
LweI GCATC 6 cut(s) 199, 236, 259, 361, 592, 816
MaeII ACGT 2 cut(s) 768, 896
MaeIII GTNAC 4 cut(s) 112, 253, 623, 1052
MalI GATC 7 cut(s) 174, 201, 300, 323, 365, 782, 792
MboI GATC 7 cut(s) 172, 199, 298, 321, 363, 780, 790
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 774
MluCI AATT 4 cut(s) 590, 615, 710, 891
MmeI TCCRAC 2 cut(s) 997, 1047
MnlI CCTC 9 cut(s) 72, 420, 448, 481, 629, 665, 917, 980, 996
Mph1103I ATGCAT 1 cut(s) 229
MseI TTAA 3 cut(s) 875, 1089, 1096
MslI CAYNNNNRTG 1 cut(s) 63
MspI CCGG 2 cut(s) 153, 944
MspR9I CCNGG 2 cut(s) 153, 764
MvaI CCWGG 1 cut(s) 764
MwoI GCNNNNNNNGC 1 cut(s) 349
NciI CCSGG 1 cut(s) 153
NdeII GATC 7 cut(s) 172, 199, 298, 321, 363, 780, 790
NlaIII CATG 7 cut(s) 68, 235, 469, 490, 624, 761, 992
NlaIV GGNNCC 4 cut(s) 201, 439, 578, 579
NmuCI GTSAC 3 cut(s) 253, 623, 1052
NsiI ATGCAT 1 cut(s) 229
NspI RCATGY 1 cut(s) 624
PaeR7I CTCGAG 1 cut(s) 308
PagI TCATGA 1 cut(s) 757
PciSI GCTCTTC 1 cut(s) 408
PfeI GAWTC 5 cut(s) 82, 337, 501, 641, 825
Pfl23II CGTACG 1 cut(s) 645
PflMI CCANNNNNTGG 1 cut(s) 35
PkrI GCNGC 5 cut(s) 22, 158, 345, 460, 851
Ppu21I YACGTR 1 cut(s) 897
PpuMI RGGWCCY 1 cut(s) 577
Psp5II RGGWCCY 1 cut(s) 577
Psp6I CCWGG 1 cut(s) 762
PspGI CCWGG 1 cut(s) 762
PspLI CGTACG 1 cut(s) 645
PspN4I GGNNCC 4 cut(s) 201, 439, 578, 579
PspPI GGNCC 7 cut(s) 161, 373, 577, 702, 946, 992, 1065
PspPPI RGGWCCY 1 cut(s) 577
PstI CTGCAG 1 cut(s) 1012
PsuI RGATCY 1 cut(s) 199
RsaI GTAC 3 cut(s) 647, 728, 1014
RsaNI GTAC 3 cut(s) 646, 727, 1013
RseI CAYNNNNRTG 1 cut(s) 63
SapI GCTCTTC 1 cut(s) 408
SaqAI TTAA 3 cut(s) 875, 1089, 1096
SatI GCNGC 5 cut(s) 21, 157, 344, 459, 850
Sau3AI GATC 7 cut(s) 172, 199, 298, 321, 363, 780, 790
Sau96I GGNCC 7 cut(s) 161, 373, 577, 702, 946, 992, 1065
ScaI AGTACT 1 cut(s) 1014
ScrFI CCNGG 2 cut(s) 153, 764
SduI GDGCHC 1 cut(s) 774
SfaNI GCATC 6 cut(s) 199, 236, 259, 361, 592, 816
SfcI CTRYAG 2 cut(s) 1008, 1077
Sfr274I CTCGAG 1 cut(s) 308
SinI GGWCC 7 cut(s) 161, 373, 577, 702, 946, 992, 1065
SlaI CTCGAG 1 cut(s) 308
SmiMI CAYNNNNRTG 1 cut(s) 63
SmlI CTYRAG 3 cut(s) 308, 432, 733
SmoI CTYRAG 3 cut(s) 308, 432, 733
Sse9I AATT 4 cut(s) 590, 615, 710, 891
SsiI CCGC 3 cut(s) 156, 159, 849
SspI AATATT 2 cut(s) 91, 294
StyD4I CCNGG 2 cut(s) 151, 762
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 996
TaiI ACGT 2 cut(s) 771, 899
TaqI TCGA 3 cut(s) 297, 309, 525
TaqII GACCGA 1 cut(s) 390
TasI AATT 4 cut(s) 590, 615, 710, 891
TatI WGTACW 1 cut(s) 1012
TauI GCSGC 2 cut(s) 159, 852
TfiI GAWTC 5 cut(s) 82, 337, 501, 641, 825
Tru1I TTAA 3 cut(s) 875, 1089, 1096
Tru9I TTAA 3 cut(s) 875, 1089, 1096
TscAI CASTG 2 cut(s) 267, 562
TseFI GTSAC 3 cut(s) 253, 623, 1052
TseI GCWGC 3 cut(s) 20, 343, 458
Tsp45I GTSAC 3 cut(s) 253, 623, 1052
TspDTI ATGAA 6 cut(s) 35, 248, 454, 787, 917, 923
TspGWI ACGGA 4 cut(s) 566, 684, 715, 783
TspRI CASTG 2 cut(s) 267, 562
Van91I CCANNNNNTGG 1 cut(s) 35
VpaK11BI GGWCC 7 cut(s) 161, 373, 577, 702, 946, 992, 1065
XceI RCATGY 1 cut(s) 624
XhoI CTCGAG 1 cut(s) 308
ZrmI AGTACT 1 cut(s) 1014
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.