Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005545.1

Orthogroup ID

OG0006034

Physical Location & Seq

Genomic Coordinates Reverse (-)

4678 .. 7106

Gene Structure 2429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005545.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

atgagcagtaaatcattatcaccagtagcagcaccattatctgtgacagttattgggaataacagtactggtgttatggagaataacaaaacagcagcaacaccaaaggctggtggtgttcatcaccattatcatcatcatcatcatcatcacggattggtcaagaggattctaaatattgctctggtgtgtgtggctgttactctggcttcccttctcttctacatcgctgtcttccccggcggcggacctatttatgatcctttgttctcagctaaatctcaggatcccttggatgcagttctgagaaatgcatccatgaaggacaagaccataatcgtcacaacactgaatgatgcgtgggcagaacccaactcaatattcgatctgtttctcgagagttttcggatcggaaacaacacgaatcggctgctgaagcatctggtggtgatctgcttggaccaaaaggcatactctcgttgcttggctcttcaccctcactgctaccaactctacactcaaggtgccaactttaccagcgaggcagctttcatgtcctccgattacttgcacatgatgtggagaagaatccagtttttgacttctattctcgaaaaaggatacagctttgtctttacggatactgacattatgtggcttagagacccattcccacaattcttcccagatgcagacttccaaattgcatgtgactacttccgaggcgattcttacgatgtgaacaaccttccgaacggaggatttacctatgtagtctctaataaacggaccacccaattctacaacttttggtacttctcaaggcaggcgtatccgaataatcacgaccaggacgtgctcaacaagatcaaatctgatccgttcatcaccagcatcggattgaaaatgagattcttggacaccaaatactttggcggcttctgtcagcccagtaaagatttaaacctggtttgcacaatgcacgctaattgctgtgttggtctcgataacaaagtcaatgacctcaaaattctgcttcaagattggagaaattacgtggcattgcctccttctccttcttcatcttcttccggtcctacttctaataccaccacgcctccaacaactatgccctcttggaccgttccacagaactgcagtacttccttccaacgccaacgccacggccggcacttgttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

400

Amino Acids

45.14

Weight (kDa)

8.59

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19975 AT5G44820
fragaria_vesca	FvH4_5g18190 FvH4_5g18190 FvH4_5g18190
malus_domestica	MD06G1237300.v1.1 MD06G1237400.v1.1 MD06G1237600.v1.1 MD14G1244100.v1.1 MD14G1244200.v1.1
prunus_persica	Prupe.5G241800_v2.0.a1
pyrus_communis	pycom06g21290 pycom06g21330 pycom14g20530
rosa_chinensis	RchiOBHm_Chr7g0177411
rosa_laevigata	RLG00000005539
rosa_multiflora	Rmu_sc0005310.1_g000002 Rmu_sc0005545.1_g000003 Rmu_sc0019030.1_g000001 Rmu_sc0019031.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275890
rosa_rugosa	Rorug06G0405600
rosa_samantha	Rh7AG005300 Rh7BG005300 Rh7CG005400 Rh7DG005100
rosa_wichuraiana	Rw7G000440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	524
AccB7I	CCANNNNNTGG	1 cut(s)	110
AciI	CCGC	3 cut(s)	243, 246, 936
AclWI	GGATC	5 cut(s)	254, 281, 294, 416, 872
AcoI	YGGCCR	1 cut(s)	1186
AcsI	RAATTY	1 cut(s)	1029
AcuI	CTGAAG	1 cut(s)	455
AfaI	GTAC	3 cut(s)	67, 815, 1162
AfiI	CCNNNNNNNGG	3 cut(s)	110, 245, 758
AgsI	TTSAA	2 cut(s)	904, 1040
AjiI	CACGTC	1 cut(s)	856
AjnI	CCWGG	2 cut(s)	849, 966
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AluBI	AGCT	3 cut(s)	275, 548, 627
AluI	AGCT	3 cut(s)	275, 548, 627
Alw21I	GWGCWC	1 cut(s)	861
Alw26I	GTCTC	3 cut(s)	657, 781, 1007
AlwI	GGATC	5 cut(s)	254, 281, 294, 416, 872
Ama87I	CYCGRG	1 cut(s)	395
AoxI	GGCC	1 cut(s)	1186
ApeKI	GCWGC	4 cut(s)	29, 95, 430, 545
ApoI	RAATTY	1 cut(s)	1029
AspS9I	GGNCC	5 cut(s)	248, 460, 789, 1094, 1140
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	5 cut(s)	12, 116, 460, 485, 880
AvaI	CYCGRG	1 cut(s)	395
AvaII	GGWCC	5 cut(s)	248, 460, 789, 1094, 1140
BamHI	GGATCC	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	524
BbsI	GAAGAC	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	861
BbvI	GCAGC	4 cut(s)	41, 107, 417, 557
BceAI	ACGGC	1 cut(s)	1201
BcgI	CGANNNNNNTGC	2 cut(s)	412, 446
BciT130I	CCWGG	2 cut(s)	851, 968
BciVI	GTATCC	3 cut(s)	614, 634, 843
BcnI	CCSGG	1 cut(s)	240
BcoDI	GTCTC	3 cut(s)	657, 781, 1007
BfmI	CTRYAG	1 cut(s)	1156
BfuI	GTATCC	3 cut(s)	614, 634, 843
BisI	GCNGC	6 cut(s)	30, 96, 244, 431, 546, 937
BlsI	GCNGC	6 cut(s)	31, 97, 245, 432, 547, 938
BmcAI	AGTACT	2 cut(s)	67, 1162
Bme1390I	CCNGG	3 cut(s)	240, 851, 968
Bme18I	GGWCC	5 cut(s)	248, 460, 789, 1094, 1140
BmeT110I	CYCGRG	1 cut(s)	395
BmgBI	CACGTC	1 cut(s)	856
BmgT120I	GGNCC	5 cut(s)	248, 460, 789, 1094, 1140
BmiI	GGNNCC	2 cut(s)	288, 526
BmrFI	CCNGG	3 cut(s)	240, 851, 968
BmrI	ACTGGG	1 cut(s)	945
BmsI	GCATC	6 cut(s)	286, 323, 346, 448, 679, 903
BmuI	ACTGGG	1 cut(s)	945
BpiI	GAAGAC	1 cut(s)	226
BpuEI	CTTGAG	2 cut(s)	504, 805
BpuMI	CCSGG	1 cut(s)	240
BsaAI	YACGTR	1 cut(s)	1057
BsaI	GGTCTC	2 cut(s)	657, 1007
BsaJI	CCNNGG	4 cut(s)	238, 291, 721, 1183
BsaWI	WCCGGW	1 cut(s)	1091
BsaXI	ACNNNNNCTCC	2 cut(s)	1102, 1132
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 245, 758
Bse118I	RCCGGY	1 cut(s)	1188
Bse1I	ACTGG	4 cut(s)	23, 73, 592, 951
Bse3DI	GCAATG	1 cut(s)	1061
BseBI	CCWGG	2 cut(s)	851, 968
BseDI	CCNNGG	4 cut(s)	238, 291, 721, 1183
BseGI	GGATG	2 cut(s)	301, 314
BseLI	CCNNNNNNNGG	3 cut(s)	110, 245, 758
BseMI	GCAATG	1 cut(s)	1061
BseMII	CTCAG	3 cut(s)	285, 296, 296
BseNI	ACTGG	4 cut(s)	23, 73, 592, 951
BseX3I	CGGCCG	1 cut(s)	1186
BseXI	GCAGC	4 cut(s)	41, 107, 417, 557
Bsh1285I	CGRYCG	1 cut(s)	1189
BshFI	GGCC	1 cut(s)	1188
BshNI	GGYRCC	1 cut(s)	524
BsiEI	CGRYCG	1 cut(s)	1189
BsiHKAI	GWGCWC	1 cut(s)	861
BsiHKCI	CYCGRG	1 cut(s)	395
BsiSI	CCGG	3 cut(s)	240, 1092, 1189
BslI	CCNNNNNNNGG	3 cut(s)	110, 245, 758
BsmAI	GTCTC	3 cut(s)	657, 781, 1007
BsnI	GGCC	1 cut(s)	1188
Bso31I	GGTCTC	2 cut(s)	657, 1007
BsoBI	CYCGRG	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	861
Bsp143I	GATC	7 cut(s)	259, 286, 385, 408, 450, 867, 877
BspACI	CCGC	3 cut(s)	243, 246, 936
BspANI	GGCC	1 cut(s)	1188
BspCNI	CTCAG	3 cut(s)	284, 295, 297
BspLI	GGNNCC	2 cut(s)	288, 526
BspMAI	CTGCAG	1 cut(s)	1160
BspPI	GGATC	5 cut(s)	254, 281, 294, 416, 872
BspQI	GCTCTTC	1 cut(s)	495
BspT107I	GGYRCC	1 cut(s)	524
BspTNI	GGTCTC	2 cut(s)	657, 1007
BsrDI	GCAATG	1 cut(s)	1061
BsrFI	RCCGGY	1 cut(s)	1188
BsrI	ACTGG	4 cut(s)	23, 73, 592, 951
BssAI	RCCGGY	1 cut(s)	1188
BssECI	CCNNGG	4 cut(s)	238, 291, 721, 1183
BssMI	GATC	7 cut(s)	259, 286, 385, 408, 450, 867, 877
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	2 cut(s)	851, 968
Bst4CI	ACNGT	3 cut(s)	49, 65, 1144
Bst6I	CTCTTC	2 cut(s)	224, 495
BstBAI	YACGTR	1 cut(s)	1057
BstC8I	GCNNGC	3 cut(s)	828, 984, 1190
BstDEI	CTNAG	4 cut(s)	271, 282, 305, 659
BstDSI	CCRYGG	1 cut(s)	1183
BstF5I	GGATG	2 cut(s)	301, 314
BstKTI	GATC	7 cut(s)	262, 289, 388, 411, 453, 870, 880
BstMAI	GTCTC	3 cut(s)	657, 781, 1007
BstMBI	GATC	7 cut(s)	259, 286, 385, 408, 450, 867, 877
BstMCI	CGRYCG	1 cut(s)	1189
BstMWI	GCNNNNNNNGC	1 cut(s)	436
BstNI	CCWGG	2 cut(s)	851, 968
BstNSI	RCATGY	1 cut(s)	711
BstSCI	CCNGG	3 cut(s)	238, 849, 966
BstSFI	CTRYAG	1 cut(s)	1156
BstV1I	GCAGC	4 cut(s)	41, 107, 417, 557
BstV2I	GAAGAC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BstZI	CGGCCG	1 cut(s)	1186
BsuI	GTATCC	3 cut(s)	614, 634, 843
BsuRI	GGCC	1 cut(s)	1188
BtgI	CCRYGG	1 cut(s)	1183
BtgZI	GCGATG	1 cut(s)	211
BtrI	CACGTC	1 cut(s)	856
BtsCI	GGATG	2 cut(s)	301, 314
BtsI	GCAGTG	1 cut(s)	499
BtsIMutI	CAGTG	2 cut(s)	347, 499
Cac8I	GCNNGC	3 cut(s)	828, 984, 1190
Cfr10I	RCCGGY	1 cut(s)	1188
Cfr13I	GGNCC	5 cut(s)	248, 460, 789, 1094, 1140
CsiI	ACCWGGT	1 cut(s)	966
Csp6I	GTAC	3 cut(s)	66, 814, 1161
CviAII	CATG	4 cut(s)	319, 553, 574, 708
CviQI	GTAC	3 cut(s)	66, 814, 1161
DdeI	CTNAG	4 cut(s)	271, 282, 305, 659
DpnI	GATC	7 cut(s)	261, 288, 387, 410, 452, 869, 879
DpnII	GATC	7 cut(s)	259, 286, 385, 408, 450, 867, 877
DraI	TTTAAA	1 cut(s)	963
EaeI	YGGCCR	1 cut(s)	1186
EagI	CGGCCG	1 cut(s)	1186
Eam1104I	CTCTTC	2 cut(s)	224, 495
EarI	CTCTTC	2 cut(s)	224, 495
EciI	GGCGGA	1 cut(s)	261
EclXI	CGGCCG	1 cut(s)	1186
Eco130I	CCWWGG	1 cut(s)	291
Eco31I	GGTCTC	2 cut(s)	657, 1007
Eco47I	GGWCC	5 cut(s)	248, 460, 789, 1094, 1140
Eco52I	CGGCCG	1 cut(s)	1186
Eco57I	CTGAAG	1 cut(s)	455
Eco88I	CYCGRG	1 cut(s)	395
EcoRII	CCWGG	2 cut(s)	849, 966
EcoT14I	CCWWGG	1 cut(s)	291
EcoT22I	ATGCAT	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	4 cut(s)	322, 556, 577, 711
FatI	CATG	4 cut(s)	318, 552, 573, 707
Fnu4HI	GCNGC	6 cut(s)	30, 96, 244, 431, 546, 937
FokI	GGATG	2 cut(s)	301, 308
Fsp4HI	GCNGC	6 cut(s)	30, 96, 244, 431, 546, 937
GluI	GCNGC	6 cut(s)	30, 96, 244, 431, 546, 937
HaeIII	GGCC	1 cut(s)	1188
HapII	CCGG	3 cut(s)	240, 1092, 1189
Hin1II	CATG	4 cut(s)	322, 556, 577, 711
HinfI	GANTC	5 cut(s)	169, 424, 588, 728, 912
HpaII	CCGG	3 cut(s)	240, 1092, 1189
HphI	GGTGA	5 cut(s)	12, 116, 460, 485, 880
Hpy166II	GTNNAC	1 cut(s)	742
Hpy188I	TCNGA	9 cut(s)	306, 408, 413, 562, 722, 753, 837, 877, 899
Hpy188III	TCNNGA	8 cut(s)	163, 284, 395, 397, 611, 845, 1004, 1040
Hpy8I	GTNNAC	1 cut(s)	742
HpyAV	CCTTC	6 cut(s)	224, 316, 758, 1080, 1086, 1177
HpyCH4III	ACNGT	3 cut(s)	49, 65, 1144
HpyCH4IV	ACGT	2 cut(s)	855, 1056
HpyCH4V	TGCA	8 cut(s)	299, 314, 571, 692, 707, 975, 982, 1158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	436
HpyF3I	CTNAG	4 cut(s)	271, 282, 305, 659
HpySE526I	ACGT	2 cut(s)	855, 1056
Hsp92II	CATG	4 cut(s)	322, 556, 577, 711
KroI	GCCGGC	1 cut(s)	1188
KroNI	GCCGGC	1 cut(s)	1190
Kzo9I	GATC	7 cut(s)	259, 286, 385, 408, 450, 867, 877
LguI	GCTCTTC	1 cut(s)	495
Lsp1109I	GCAGC	4 cut(s)	41, 107, 417, 557
LweI	GCATC	6 cut(s)	286, 323, 346, 448, 679, 903
MabI	ACCWGGT	1 cut(s)	966
MaeII	ACGT	2 cut(s)	855, 1056
MaeIII	GTNAC	4 cut(s)	43, 199, 340, 710
MalI	GATC	7 cut(s)	261, 288, 387, 410, 452, 869, 879
MboI	GATC	7 cut(s)	259, 286, 385, 408, 450, 867, 877
MboII	GAAGA	8 cut(s)	211, 226, 482, 597, 673, 1071, 1077, 1080
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	1 cut(s)	861
MluCI	AATT	6 cut(s)	677, 702, 797, 988, 1029, 1051
MmeI	TCCRAC	2 cut(s)	1145, 1195
Mph1103I	ATGCAT	1 cut(s)	316
MroNI	GCCGGC	1 cut(s)	1188
MseI	TTAA	1 cut(s)	962
MspI	CCGG	3 cut(s)	240, 1092, 1189
MspR9I	CCNGG	3 cut(s)	240, 851, 968
MvaI	CCWGG	2 cut(s)	851, 968
MwoI	GCNNNNNNNGC	1 cut(s)	436
NaeI	GCCGGC	1 cut(s)	1190
NciI	CCSGG	1 cut(s)	240
NdeII	GATC	7 cut(s)	259, 286, 385, 408, 450, 867, 877
NgoMIV	GCCGGC	1 cut(s)	1188
NlaIII	CATG	4 cut(s)	322, 556, 577, 711
NlaIV	GGNNCC	2 cut(s)	288, 526
NmuCI	GTSAC	3 cut(s)	43, 340, 710
NsiI	ATGCAT	1 cut(s)	316
NspI	RCATGY	1 cut(s)	711
PaeR7I	CTCGAG	1 cut(s)	395
PciSI	GCTCTTC	1 cut(s)	495
PcsI	WCGNNNNNNNCGW	1 cut(s)	852
PdiI	GCCGGC	1 cut(s)	1190
PfeI	GAWTC	5 cut(s)	169, 424, 588, 728, 912
PflMI	CCANNNNNTGG	1 cut(s)	110
PkrI	GCNGC	6 cut(s)	31, 97, 245, 432, 547, 938
Ppu21I	YACGTR	1 cut(s)	1057
Psp6I	CCWGG	2 cut(s)	849, 966
PspGI	CCWGG	2 cut(s)	849, 966
PspN4I	GGNNCC	2 cut(s)	288, 526
PspPI	GGNCC	5 cut(s)	248, 460, 789, 1094, 1140
PstI	CTGCAG	1 cut(s)	1160
PsuI	RGATCY	1 cut(s)	286
RsaI	GTAC	3 cut(s)	67, 815, 1162
RsaNI	GTAC	3 cut(s)	66, 814, 1161
SapI	GCTCTTC	1 cut(s)	495
SaqAI	TTAA	1 cut(s)	962
SatI	GCNGC	6 cut(s)	30, 96, 244, 431, 546, 937
Sau3AI	GATC	7 cut(s)	259, 286, 385, 408, 450, 867, 877
Sau96I	GGNCC	5 cut(s)	248, 460, 789, 1094, 1140
ScaI	AGTACT	2 cut(s)	67, 1162
ScrFI	CCNGG	3 cut(s)	240, 851, 968
SduI	GDGCHC	1 cut(s)	861
SexAI	ACCWGGT	1 cut(s)	966
SfaNI	GCATC	6 cut(s)	286, 323, 346, 448, 679, 903
SfcI	CTRYAG	1 cut(s)	1156
Sfr274I	CTCGAG	1 cut(s)	395
SinI	GGWCC	5 cut(s)	248, 460, 789, 1094, 1140
SlaI	CTCGAG	1 cut(s)	395
SmlI	CTYRAG	3 cut(s)	395, 519, 820
SmoI	CTYRAG	3 cut(s)	395, 519, 820
Sse9I	AATT	6 cut(s)	677, 702, 797, 988, 1029, 1051
SsiI	CCGC	3 cut(s)	243, 246, 936
SspI	AATATT	2 cut(s)	178, 381
StyD4I	CCNGG	3 cut(s)	238, 849, 966
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	3 cut(s)	49, 65, 1144
TaiI	ACGT	2 cut(s)	858, 1059
TaqI	TCGA	4 cut(s)	384, 396, 612, 1005
TasI	AATT	6 cut(s)	677, 702, 797, 988, 1029, 1051
TatI	WGTACW	2 cut(s)	65, 1160
TauI	GCSGC	2 cut(s)	246, 939
TfiI	GAWTC	5 cut(s)	169, 424, 588, 728, 912
Tru1I	TTAA	1 cut(s)	962
Tru9I	TTAA	1 cut(s)	962
TscAI	CASTG	2 cut(s)	354, 506
TseFI	GTSAC	3 cut(s)	43, 340, 710
TseI	GCWGC	4 cut(s)	29, 95, 430, 545
Tsp45I	GTSAC	3 cut(s)	43, 340, 710
TspDTI	ATGAA	5 cut(s)	110, 335, 541, 874, 1071
TspGWI	ACGGA	5 cut(s)	168, 653, 771, 802, 870
TspRI	CASTG	2 cut(s)	354, 506
Van91I	CCANNNNNTGG	1 cut(s)	110
VpaK11BI	GGWCC	5 cut(s)	248, 460, 789, 1094, 1140
XapI	RAATTY	1 cut(s)	1029
XceI	RCATGY	1 cut(s)	711
XhoI	CTCGAG	1 cut(s)	395
ZrmI	AGTACT	2 cut(s)	67, 1162
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.