Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001869

Physical Location & Seq

Genomic Coordinates Reverse (-)

11727706 .. 11730509

Gene Structure 2804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCGAAAACTCGACCTGGTGTCGCCTCCAAAATTAAGACGGGAAGGAAGGAGCTGGACTCTTATACCATCAAGGGCACCAACAAAGTTGTGAGAGCGGGAGATTGTGTGTTGATGCGCCCATCAGATGCTGGTAAACCACCATATGTGGCCCGTGTTGAGAAGATTGAAGCTGATGCGAGGAACAATGTGAAGGTGCACTGTCGATGGTATTACCGCCCTGAGGAGTCACTTGGTGGTAGGAGACAATTTCATGGAGCCAAAGAGCTTTTCTTGTCTGACCATTTTGATGTTCAAAGTGCACACACCATTGAGGGAAAATGCATTGTTCACACCTTCAAAAACTACACGAGGCTTGAAAACGTTGGGGCAGAGGATTATTATTGTAGATTCGAGTACAAGGCTGCTACTGGCGCATTTACCCCTGATCGAGTTGCTGTGTACTGCAAATGTGAAATGCCTTACAATCCAGACGATCTCATGGTGCAGTGTGAAGGCTGCAAAGACTGGTATCATCCTGCGTGTGTTGGCATGACGATTGAAGAAGCAAAGAAGCTTGATCACTTTGTATGTGCTGAATGCAGTTCTGATGACGATGTCAAAAAATCGCAGAATGGGTTTACTTCATCTCCAGCTGATGATGTTAAGGTCCGTTTGTCTCTCTTTAGTCATCTCCTATATAGATGTTCTATCACTTATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH PHD

Protein Analysis

234

Amino Acids

26.57

Weight (kDa)

8.19

Isoelectric Point (pI)

31.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	31 - 142	3.7e-23	BAH domain
PHD	PF00628	149 - 194	3.5e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04260 AT4G22140 AT4G22140 AT4G22140
fragaria_vesca	FvH4_3g01411 FvH4_6g42580
malus_domestica	MD05G1352300.v1.1 MD09G1112400.v1.1 MD10G1326300.v1.1 MD11G1102600.v1.1 MD11G1102700.v1.1 MD17G1102500.v1.1
prunus_persica	Prupe.3G212300_v2.0.a1 Prupe.3G212300_v2.0.a1 Prupe.3G212300_v2.0.a1 Prupe.3G212300_v2.0.a1 Prupe.4G015400_v2.0.a1
pyrus_communis	pycom05g31920 pycom10g27630 pycom17g09690
rosa_chinensis	RchiOBHm_Chr2g0158431 RchiOBHm_Chr5g0002141
rosa_laevigata	RLG00000021087 RLG00000026695 RLG00000031000
rosa_multiflora	Rmu_sc0004855.1_g000006 Rmu_ssc0000001.1_g000006
rosa_roxburghii	Rroxscaffold_1G00024330 Rroxscaffold_1G00073770 Rroxscaffold_2G00091380
rosa_rugosa	Rorug02G0468700 Rorug02G0468800 Rorug02G0468900 Rorug04G0394600
rosa_samantha	Rh2AG534800 Rh2BG548200 Rh2CG518600 Rh2DG557800 Rh5AG016400 Rh5BG019900 Rh5CG017700 Rh5CG364100 Rh5CG364200 Rh5DG017900
rosa_wichuraiana	Rw2G044290 Rw5G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	703
AccB1I	GGYRCC	1 cut(s)	77
AccBSI	CCGCTC	1 cut(s)	98
AciI	CCGC	2 cut(s)	98, 217
AclI	AACGTT	1 cut(s)	363
AdeI	CACNNNGTG	1 cut(s)	236
AfaI	GTAC	2 cut(s)	398, 443
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	5 cut(s)	170, 296, 340, 359, 542
AhdI	GACNNNNNGTC	1 cut(s)	20
AjnI	CCWGG	1 cut(s)	16
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	5 cut(s)	55, 173, 268, 556, 635
AluI	AGCT	5 cut(s)	55, 173, 268, 556, 635
Alw21I	GWGCWC	2 cut(s)	201, 304
Alw26I	GTCTC	2 cut(s)	238, 663
Alw44I	GTGCAC	2 cut(s)	197, 300
AlwNI	CAGNNNCTG	1 cut(s)	131
AoxI	GGCC	1 cut(s)	150
ApaLI	GTGCAC	2 cut(s)	197, 300
ApeKI	GCWGC	2 cut(s)	404, 498
AspLEI	GCGC	2 cut(s)	120, 416
AspS9I	GGNCC	2 cut(s)	151, 649
AvaII	GGWCC	1 cut(s)	649
AxyI	CCTNAGG	1 cut(s)	222
BaeGI	GKGCMC	3 cut(s)	80, 201, 304
BanI	GGYRCC	1 cut(s)	77
BauI	CACGAG	1 cut(s)	349
Bbv12I	GWGCWC	2 cut(s)	201, 304
BbvI	GCAGC	2 cut(s)	391, 485
BccI	CCATC	3 cut(s)	77, 130, 201
BciT130I	CCWGG	1 cut(s)	18
BclI	TGATCA	1 cut(s)	559
BcoDI	GTCTC	2 cut(s)	238, 663
BisI	GCNGC	2 cut(s)	405, 499
BlsI	GCNGC	2 cut(s)	406, 500
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	649
BmeRI	GACNNNNNGTC	1 cut(s)	20
BmgT120I	GGNCC	2 cut(s)	151, 649
BmiI	GGNNCC	2 cut(s)	79, 259
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	3 cut(s)	105, 118, 166
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
BpmI	CTGGAG	1 cut(s)	615
BsaXI	ACNNNNNCTCC	4 cut(s)	93, 123, 613, 643
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	2 cut(s)	415, 512
Bse21I	CCTNAGG	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	514
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	2 cut(s)	415, 512
BseRI	GAGGAG	1 cut(s)	239
BseSI	GKGCMC	3 cut(s)	80, 201, 304
BseXI	GCAGC	2 cut(s)	391, 485
BsgI	GTGCAG	1 cut(s)	506
BshFI	GGCC	1 cut(s)	152
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	2 cut(s)	201, 304
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	2 cut(s)	238, 663
BsmI	GAATGC	1 cut(s)	584
BsnI	GGCC	1 cut(s)	152
Bsp1286I	GDGCHC	3 cut(s)	80, 201, 304
Bsp143I	GATC	3 cut(s)	427, 475, 559
BspACI	CCGC	2 cut(s)	98, 217
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	79, 259
BspT107I	GGYRCC	1 cut(s)	77
BsrBI	CCGCTC	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	415, 512
BssMI	GATC	3 cut(s)	427, 475, 559
BssSI	CACGAG	1 cut(s)	349
Bst2BI	CACGAG	1 cut(s)	349
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	514
BstHHI	GCGC	2 cut(s)	120, 416
BstKTI	GATC	3 cut(s)	430, 478, 562
BstMAI	GTCTC	2 cut(s)	238, 663
BstMBI	GATC	3 cut(s)	427, 475, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstNI	CCWGG	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	16
BstSLI	GKGCMC	3 cut(s)	80, 201, 304
BstV1I	GCAGC	2 cut(s)	391, 485
Bsu36I	CCTNAGG	1 cut(s)	222
BsuRI	GGCC	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	514
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	2 cut(s)	199, 494
CaiI	CAGNNNCTG	1 cut(s)	131
CfoI	GCGC	2 cut(s)	120, 416
Cfr13I	GGNCC	2 cut(s)	151, 649
CsiI	ACCWGGT	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	397, 442
CviAII	CATG	3 cut(s)	254, 481, 532
CviQI	GTAC	2 cut(s)	397, 442
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	3 cut(s)	429, 477, 561
DpnII	GATC	3 cut(s)	427, 475, 559
DraIII	CACNNNGTG	1 cut(s)	236
DriI	GACNNNNNGTC	1 cut(s)	20
Eam1105I	GACNNNNNGTC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	649
Eco81I	CCTNAGG	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	16
EcoT22I	ATGCAT	1 cut(s)	326
FaeI	CATG	3 cut(s)	257, 484, 535
FatI	CATG	3 cut(s)	253, 480, 531
FauI	CCCGC	1 cut(s)	91
FauNDI	CATATG	1 cut(s)	145
FbaI	TGATCA	1 cut(s)	559
Fnu4HI	GCNGC	2 cut(s)	405, 499
FokI	GGATG	1 cut(s)	501
Fsp4HI	GCNGC	2 cut(s)	405, 499
GlaI	GCGC	2 cut(s)	119, 415
GluI	GCNGC	2 cut(s)	405, 499
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	1 cut(s)	152
HhaI	GCGC	2 cut(s)	120, 416
Hin1II	CATG	3 cut(s)	257, 484, 535
Hin6I	GCGC	2 cut(s)	118, 414
HinP1I	GCGC	2 cut(s)	118, 414
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	3 cut(s)	59, 227, 390
Hpy166II	GTNNAC	6 cut(s)	137, 199, 302, 331, 442, 621
Hpy188I	TCNGA	3 cut(s)	127, 280, 589
Hpy188III	TCNNGA	1 cut(s)	470
Hpy8I	GTNNAC	6 cut(s)	137, 199, 302, 331, 442, 621
HpyAV	CCTTC	5 cut(s)	39, 43, 187, 346, 488
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	7 cut(s)	199, 302, 324, 447, 487, 501, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	3 cut(s)	257, 484, 535
HspAI	GCGC	2 cut(s)	118, 414
Ksp22I	TGATCA	1 cut(s)	559
Kzo9I	GATC	3 cut(s)	427, 475, 559
LmnI	GCTCC	2 cut(s)	52, 257
Lsp1109I	GCAGC	2 cut(s)	391, 485
LweI	GCATC	3 cut(s)	105, 118, 166
MabI	ACCWGGT	1 cut(s)	16
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	3 cut(s)	429, 477, 561
MbiI	CCGCTC	1 cut(s)	98
MboI	GATC	3 cut(s)	427, 475, 559
MboII	GAAGA	2 cut(s)	175, 554
MhlI	GDGCHC	3 cut(s)	80, 201, 304
MluCI	AATT	2 cut(s)	33, 248
MlyI	GAGTC	2 cut(s)	53, 236
MnlI	CCTC	6 cut(s)	37, 174, 217, 307, 345, 367
Mph1103I	ATGCAT	1 cut(s)	326
MseI	TTAA	2 cut(s)	36, 645
MslI	CAYNNNNRTG	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	635
MspR9I	CCNGG	1 cut(s)	18
Mva1269I	GAATGC	1 cut(s)	584
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	413
NdeI	CATATG	1 cut(s)	145
NdeII	GATC	3 cut(s)	427, 475, 559
NlaIII	CATG	3 cut(s)	257, 484, 535
NlaIV	GGNNCC	2 cut(s)	79, 259
NmuCI	GTSAC	1 cut(s)	228
NsiI	ATGCAT	1 cut(s)	326
PctI	GAATGC	1 cut(s)	584
PfeI	GAWTC	1 cut(s)	390
PflFI	GACNNNGTC	1 cut(s)	596
PkrI	GCNGC	2 cut(s)	406, 500
PleI	GAGTC	2 cut(s)	53, 235
PpsI	GAGTC	2 cut(s)	53, 235
PsiI	TTATAA	1 cut(s)	703
Psp1406I	AACGTT	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	2 cut(s)	79, 259
PspPI	GGNCC	2 cut(s)	151, 649
PstNI	CAGNNNCTG	1 cut(s)	131
PsyI	GACNNNGTC	1 cut(s)	596
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	2 cut(s)	398, 443
RsaNI	GTAC	2 cut(s)	397, 442
RseI	CAYNNNNRTG	1 cut(s)	288
SaqAI	TTAA	2 cut(s)	36, 645
SatI	GCNGC	2 cut(s)	405, 499
Sau3AI	GATC	3 cut(s)	427, 475, 559
Sau96I	GGNCC	2 cut(s)	151, 649
SchI	GAGTC	2 cut(s)	53, 236
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	3 cut(s)	80, 201, 304
SexAI	ACCWGGT	1 cut(s)	16
SfaNI	GCATC	3 cut(s)	105, 118, 166
SinI	GGWCC	1 cut(s)	649
SmiMI	CAYNNNNRTG	1 cut(s)	288
Sse9I	AATT	2 cut(s)	33, 248
SsiI	CCGC	2 cut(s)	98, 217
StyD4I	CCNGG	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	4 cut(s)	13, 205, 393, 430
TasI	AATT	2 cut(s)	33, 248
TatI	WGTACW	2 cut(s)	396, 441
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	2 cut(s)	36, 645
Tru9I	TTAA	2 cut(s)	36, 645
TscAI	CASTG	2 cut(s)	206, 494
TseFI	GTSAC	1 cut(s)	228
TseI	GCWGC	2 cut(s)	404, 498
Tsp45I	GTSAC	1 cut(s)	228
TspDTI	ATGAA	2 cut(s)	242, 615
TspGWI	ACGGA	1 cut(s)	641
TspRI	CASTG	2 cut(s)	206, 494
Tth111I	GACNNNGTC	1 cut(s)	596
VneI	GTGCAC	2 cut(s)	197, 300
VpaK11BI	GGWCC	1 cut(s)	649
Zsp2I	ATGCAT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.