Rorug02G0468800

BAH and coiled-coil domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
59960716 .. 59964779
4064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0468800.1

Sequence Viewer

Length: 1008 bp
ATGGCCGGTGCGGGAATTCACCCCTACCATCAGCAATGGGCGCCGGCAGCCGCCCCGCCTCCTCCTCCGGCCGTCGTCGCGGCCGCCCCTCCACCTCCACCTCACCACCTCGTCGACAACCCGAACCGACCCGCCAACGACGAGGTCCGCACCATTTTCATCACCGGTCTTCCCGAAGATGTGAAGGAGAGGGAGATACAGAACCTCCTCCGATGGCTGCCGGGCTACGAGGCCTCCCAGGTCAACTACAAAGGCGAGAAGCCCATGAGCTTCGCGCTCTTCGCCACTGCTCAGCAAGCTATCGCTGCCAAAGACGCTCTTCAGAGTATGGTTTTCGATACCGAATCGAAGGCGGTGTTGCATACGGAGATGGCAAAGAAGAATCTTTTTGTGAAAAGAGGGATTGTAGGGGATTCAAATGCTTATGATCAAAGTAAACGATTGCGTACTGGTGACTACACACAGGCTGGTTATTCCAGTCCGGTGCCTTTTCATCCGCCACCGCCACCTGTTTGGGGACCACACGGGTATATGGCTCCACCACCTCCTCCATATGATCCATATGGTTATCCTGTTGCTCCAGTACCAATGCCCCCTTCTGCTCCTGTACCAGCACCCAGCAGTTATGTACCTGTTCTGAACACAAAAGATAATCCACCATGCAATACCTTATTTATTGGCAATCTAGGAGAGAGCATTAACGAGGAAGAACTGAGGGGCCTATTCAGCTCACAACCTGGATTTAAGCAAATGAAGATCTTGCGACAGGAAAGGCATACTGTTTGCTTCATTGAGTTTGAAGATGTAAACAGTGCCACTGCTGTACACCACAATTTTCAAGGTGCTGTTATCCCCAGTTCTGGTTCTATAGGCATGAGAATACAATATCCTTTTATTACTTTGTTATCACTGATCCTTTTGAACCCATTTGGTAAAAGGAAAGATGGGAACTACCCTGGTGCTGTCCCTGCTGCAAATGGAGCTCCACCAGCTATGACATACCAGTAG

Protein Analysis

335

Amino Acids

36.41

Weight (kDa)

6.8

Isoelectric Point (pI)

65.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 224 - 285 7.1e-10 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 40, 484
AccI GTMKAC 1 cut(s) 114
AccII CGCG 2 cut(s) 80, 275
AclWI GGATC 2 cut(s) 551, 907
AcoI YGGCCR 3 cut(s) 3, 69, 81
AcsI RAATTY 1 cut(s) 15
AcuI CTGAAG 1 cut(s) 305
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 5 cut(s) 448, 585, 609, 630, 825
AfiI CCNNNNNNNGG 2 cut(s) 515, 860
AgeI ACCGGT 1 cut(s) 164
AgsI TTSAA 4 cut(s) 417, 800, 839, 922
AjnI CCWGG 3 cut(s) 237, 736, 955
AjuI GAANNNNNNNTTGG 2 cut(s) 580, 612
AluBI AGCT 5 cut(s) 270, 299, 729, 983, 992
AluI AGCT 5 cut(s) 270, 299, 729, 983, 992
Alw21I GWGCWC 1 cut(s) 985
AlwI GGATC 2 cut(s) 551, 907
AoxI GGCC 5 cut(s) 3, 69, 81, 231, 718
ApeKI GCWGC 4 cut(s) 47, 217, 305, 971
ApoI RAATTY 1 cut(s) 15
AsiGI ACCGGT 1 cut(s) 164
AspLEI GCGC 2 cut(s) 43, 277
AspS9I GGNCC 3 cut(s) 145, 518, 718
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 4 cut(s) 11, 95, 154, 464
AvaII GGWCC 2 cut(s) 145, 518
BanI GGYRCC 2 cut(s) 40, 484
BanII GRGCYC 1 cut(s) 985
BbsI GAAGAC 1 cut(s) 161
Bbv12I GWGCWC 1 cut(s) 985
BbvI GCAGC 4 cut(s) 59, 204, 292, 958
BccI CCATC 4 cut(s) 36, 207, 364, 938
BceAI ACGGC 1 cut(s) 56
BciT130I CCWGG 3 cut(s) 239, 738, 957
BclI TGATCA 1 cut(s) 427
BcnI CCSGG 1 cut(s) 222
BfaI CTAG 1 cut(s) 686
BfmI CTRYAG 1 cut(s) 867
BfoI RGCGCY 1 cut(s) 44
BglII AGATCT 1 cut(s) 756
BisI GCNGC 7 cut(s) 48, 51, 81, 84, 218, 306, 972
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 7 cut(s) 49, 52, 82, 85, 219, 307, 973
Bme1390I CCNGG 4 cut(s) 222, 239, 738, 957
Bme18I GGWCC 2 cut(s) 145, 518
BmgT120I GGNCC 3 cut(s) 145, 518, 718
BmiI GGNNCC 5 cut(s) 42, 486, 519, 537, 719
BmrFI CCNGG 4 cut(s) 222, 239, 738, 957
BmrI ACTGGG 1 cut(s) 849
BmuI ACTGGG 1 cut(s) 849
BpiI GAAGAC 1 cut(s) 161
BpmI CTGGAG 1 cut(s) 564
Bpu1102I GCTNAGC 1 cut(s) 291
BpuMI CCSGG 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 2 cut(s) 237, 955
BsaWI WCCGGW 2 cut(s) 164, 481
BsaXI ACNNNNNCTCC 4 cut(s) 189, 218, 219, 248
Bsc4I CCNNNNNNNGG 2 cut(s) 515, 860
Bse118I RCCGGY 3 cut(s) 5, 43, 164
Bse1I ACTGG 5 cut(s) 454, 477, 581, 855, 1003
Bse3DI GCAATG 1 cut(s) 41
BseBI CCWGG 3 cut(s) 239, 738, 957
BseDI CCNNGG 2 cut(s) 237, 955
BseGI GGATG 1 cut(s) 493
BseLI CCNNNNNNNGG 2 cut(s) 515, 860
BseMI GCAATG 1 cut(s) 41
BseMII CTCAG 2 cut(s) 305, 704
BseNI ACTGG 5 cut(s) 454, 477, 581, 855, 1003
BseRI GAGGAG 4 cut(s) 51, 54, 197, 537
BseX3I CGGCCG 2 cut(s) 69, 81
BseXI GCAGC 4 cut(s) 59, 204, 292, 958
BseYI CCCAGC 1 cut(s) 617
Bsh1236I CGCG 2 cut(s) 80, 275
Bsh1285I CGRYCG 2 cut(s) 72, 84
BshFI GGCC 5 cut(s) 5, 71, 83, 233, 720
BshNI GGYRCC 2 cut(s) 40, 484
BshTI ACCGGT 1 cut(s) 164
BsiEI CGRYCG 2 cut(s) 72, 84
BsiHKAI GWGCWC 1 cut(s) 985
BsiSI CCGG 6 cut(s) 6, 44, 68, 165, 221, 482
BslFI GGGAC 2 cut(s) 531, 950
BslI CCNNNNNNNGG 2 cut(s) 515, 860
BsmFI GGGAC 2 cut(s) 531, 950
BsnI GGCC 5 cut(s) 5, 71, 83, 233, 720
Bsp1286I GDGCHC 1 cut(s) 985
Bsp1407I TGTACA 1 cut(s) 823
Bsp143I GATC 4 cut(s) 427, 556, 756, 912
Bsp1720I GCTNAGC 1 cut(s) 291
BspANI GGCC 5 cut(s) 5, 71, 83, 233, 720
BspCNI CTCAG 2 cut(s) 304, 705
BspFNI CGCG 2 cut(s) 80, 275
BspLI GGNNCC 5 cut(s) 42, 486, 519, 537, 719
BspPI GGATC 2 cut(s) 551, 907
BspQI GCTCTTC 2 cut(s) 284, 324
BspT107I GGYRCC 2 cut(s) 40, 484
BsrDI GCAATG 1 cut(s) 41
BsrFI RCCGGY 3 cut(s) 5, 43, 164
BsrGI TGTACA 1 cut(s) 823
BsrI ACTGG 5 cut(s) 454, 477, 581, 855, 1003
BssAI RCCGGY 3 cut(s) 5, 43, 164
BssECI CCNNGG 2 cut(s) 237, 955
BssMI GATC 4 cut(s) 427, 556, 756, 912
BssNI GRCGYC 1 cut(s) 41
Bst2UI CCWGG 3 cut(s) 239, 738, 957
Bst4CI ACNGT 2 cut(s) 781, 812
Bst6I CTCTTC 2 cut(s) 284, 324
BstACI GRCGYC 1 cut(s) 41
BstAUI TGTACA 1 cut(s) 823
BstC8I GCNNGC 2 cut(s) 45, 297
BstDEI CTNAG 2 cut(s) 291, 713
BstF5I GGATG 1 cut(s) 493
BstFNI CGCG 2 cut(s) 80, 275
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 2 cut(s) 43, 277
BstKTI GATC 4 cut(s) 430, 559, 759, 915
BstMBI GATC 4 cut(s) 427, 556, 756, 912
BstMCI CGRYCG 2 cut(s) 72, 84
BstNI CCWGG 3 cut(s) 239, 738, 957
BstSCI CCNGG 4 cut(s) 220, 237, 736, 955
BstSFI CTRYAG 1 cut(s) 867
BstUI CGCG 2 cut(s) 80, 275
BstV1I GCAGC 4 cut(s) 59, 204, 292, 958
BstV2I GAAGAC 1 cut(s) 161
BstX2I RGATCY 1 cut(s) 756
BstXI CCANNNNNNTGG 1 cut(s) 513
BstYI RGATCY 1 cut(s) 756
BstZI CGGCCG 2 cut(s) 69, 81
BsuRI GGCC 5 cut(s) 5, 71, 83, 233, 720
BtsCI GGATG 1 cut(s) 493
BtsI GCAGTG 2 cut(s) 285, 816
BtsIMutI CAGTG 4 cut(s) 285, 816, 817, 908
Cac8I GCNNGC 2 cut(s) 45, 297
CciNI GCGGCCGC 1 cut(s) 81
CfoI GCGC 2 cut(s) 43, 277
Cfr10I RCCGGY 3 cut(s) 5, 43, 164
Cfr13I GGNCC 3 cut(s) 145, 518, 718
CseI GACGC 1 cut(s) 323
Csp6I GTAC 5 cut(s) 447, 584, 608, 629, 824
CspAI ACCGGT 1 cut(s) 164
CviAII CATG 3 cut(s) 265, 660, 874
CviQI GTAC 5 cut(s) 447, 584, 608, 629, 824
DdeI CTNAG 2 cut(s) 291, 713
DinI GGCGCC 1 cut(s) 42
DpnI GATC 4 cut(s) 429, 558, 758, 914
DpnII GATC 4 cut(s) 427, 556, 756, 912
EaeI YGGCCR 3 cut(s) 3, 69, 81
EagI CGGCCG 2 cut(s) 69, 81
Eam1104I CTCTTC 2 cut(s) 284, 324
EarI CTCTTC 2 cut(s) 284, 324
EciI GGCGGA 1 cut(s) 486
Ecl136II GAGCTC 1 cut(s) 983
EclXI CGGCCG 2 cut(s) 69, 81
Eco147I AGGCCT 1 cut(s) 233
Eco24I GRGCYC 1 cut(s) 985
Eco47I GGWCC 2 cut(s) 145, 518
Eco52I CGGCCG 2 cut(s) 69, 81
Eco53kI GAGCTC 1 cut(s) 983
Eco57I CTGAAG 1 cut(s) 305
EcoICRI GAGCTC 1 cut(s) 983
EcoO109I RGGNCCY 1 cut(s) 718
EcoRI GAATTC 1 cut(s) 15
EcoRII CCWGG 3 cut(s) 237, 736, 955
EcoT38I GRGCYC 1 cut(s) 985
EgeI GGCGCC 1 cut(s) 42
EheI GGCGCC 1 cut(s) 42
FaeI CATG 3 cut(s) 268, 663, 877
FalI AAGNNNNNCTT 2 cut(s) 303, 335
FaqI GGGAC 2 cut(s) 531, 950
FatI CATG 3 cut(s) 264, 659, 873
FauI CCCGC 3 cut(s) 4, 63, 139
FauNDI CATATG 2 cut(s) 553, 562
FbaI TGATCA 1 cut(s) 427
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 7 cut(s) 48, 51, 81, 84, 218, 306, 972
FokI GGATG 1 cut(s) 480
FriOI GRGCYC 1 cut(s) 985
Fsp4HI GCNGC 7 cut(s) 48, 51, 81, 84, 218, 306, 972
FspBI CTAG 1 cut(s) 686
GlaI GCGC 2 cut(s) 42, 276
GluI GCNGC 7 cut(s) 48, 51, 81, 84, 218, 306, 972
GsaI CCCAGC 1 cut(s) 621
GsuI CTGGAG 1 cut(s) 564
HaeII RGCGCY 1 cut(s) 44
HaeIII GGCC 5 cut(s) 5, 71, 83, 233, 720
HapII CCGG 6 cut(s) 6, 44, 68, 165, 221, 482
HgaI GACGC 1 cut(s) 323
HhaI GCGC 2 cut(s) 43, 277
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 3 cut(s) 268, 663, 877
Hin6I GCGC 2 cut(s) 41, 275
HinP1I GCGC 2 cut(s) 41, 275
HincII GTYRAC 2 cut(s) 115, 244
HindII GTYRAC 2 cut(s) 115, 244
HinfI GANTC 3 cut(s) 344, 382, 413
HpaII CCGG 6 cut(s) 6, 44, 68, 165, 221, 482
HphI GGTGA 4 cut(s) 11, 95, 154, 464
Hpy166II GTNNAC 5 cut(s) 115, 244, 437, 808, 826
Hpy188I TCNGA 3 cut(s) 212, 324, 639
Hpy188III TCNNGA 1 cut(s) 173
Hpy8I GTNNAC 5 cut(s) 115, 244, 437, 808, 826
Hpy99I CGWCG 4 cut(s) 77, 80, 116, 143
HpyAV CCTTC 3 cut(s) 178, 343, 606
HpyCH4III ACNGT 2 cut(s) 781, 812
HpyCH4V TGCA 3 cut(s) 361, 663, 974
HpyF3I CTNAG 2 cut(s) 291, 713
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 3 cut(s) 268, 663, 877
HspAI GCGC 2 cut(s) 41, 275
KasI GGCGCC 1 cut(s) 40
KroI GCCGGC 1 cut(s) 43
KroNI GCCGGC 1 cut(s) 45
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 4 cut(s) 427, 556, 756, 912
LguI GCTCTTC 2 cut(s) 284, 324
LmnI GCTCC 5 cut(s) 541, 583, 607, 980, 988
Lsp1109I GCAGC 4 cut(s) 59, 204, 292, 958
MaeI CTAG 1 cut(s) 686
MaeIII GTNAC 1 cut(s) 452
MalI GATC 4 cut(s) 429, 558, 758, 914
MboI GATC 4 cut(s) 427, 556, 756, 912
MboII GAAGA 8 cut(s) 161, 188, 271, 311, 391, 719, 766, 812
MflI RGATCY 1 cut(s) 756
MhlI GDGCHC 1 cut(s) 985
MluCI AATT 2 cut(s) 15, 832
Mly113I GGCGCC 1 cut(s) 41
MroNI GCCGGC 1 cut(s) 43
MseI TTAA 2 cut(s) 699, 744
MspI CCGG 6 cut(s) 6, 44, 68, 165, 221, 482
MspR9I CCNGG 4 cut(s) 222, 239, 738, 957
MvaI CCWGG 3 cut(s) 239, 738, 957
MvnI CGCG 2 cut(s) 80, 275
NaeI GCCGGC 1 cut(s) 45
NarI GGCGCC 1 cut(s) 41
NciI CCSGG 1 cut(s) 222
NdeI CATATG 2 cut(s) 553, 562
NdeII GATC 4 cut(s) 427, 556, 756, 912
NgoMIV GCCGGC 1 cut(s) 43
NlaIII CATG 3 cut(s) 268, 663, 877
NlaIV GGNNCC 5 cut(s) 42, 486, 519, 537, 719
NmuCI GTSAC 1 cut(s) 452
NotI GCGGCCGC 1 cut(s) 81
PceI AGGCCT 1 cut(s) 233
PciSI GCTCTTC 2 cut(s) 284, 324
PdiI GCCGGC 1 cut(s) 45
PfeI GAWTC 3 cut(s) 344, 382, 413
PflFI GACNNNGTC 1 cut(s) 143
PinAI ACCGGT 1 cut(s) 164
PkrI GCNGC 7 cut(s) 49, 52, 82, 85, 219, 307, 973
PluTI GGCGCC 1 cut(s) 44
Psp124BI GAGCTC 1 cut(s) 985
Psp6I CCWGG 3 cut(s) 237, 736, 955
PspFI CCCAGC 1 cut(s) 617
PspGI CCWGG 3 cut(s) 237, 736, 955
PspN4I GGNNCC 5 cut(s) 42, 486, 519, 537, 719
PspPI GGNCC 3 cut(s) 145, 518, 718
PsuI RGATCY 1 cut(s) 756
PsyI GACNNNGTC 1 cut(s) 143
RsaI GTAC 5 cut(s) 448, 585, 609, 630, 825
RsaNI GTAC 5 cut(s) 447, 584, 608, 629, 824
SacI GAGCTC 1 cut(s) 985
SalI GTCGAC 1 cut(s) 113
SapI GCTCTTC 2 cut(s) 284, 324
SaqAI TTAA 2 cut(s) 699, 744
SatI GCNGC 7 cut(s) 48, 51, 81, 84, 218, 306, 972
Sau3AI GATC 4 cut(s) 427, 556, 756, 912
Sau96I GGNCC 3 cut(s) 145, 518, 718
ScrFI CCNGG 4 cut(s) 222, 239, 738, 957
SduI GDGCHC 1 cut(s) 985
SfcI CTRYAG 1 cut(s) 867
SfoI GGCGCC 1 cut(s) 42
SinI GGWCC 2 cut(s) 145, 518
Sse9I AATT 2 cut(s) 15, 832
SseBI AGGCCT 1 cut(s) 233
SspDI GGCGCC 1 cut(s) 40
SspMI CTAG 1 cut(s) 686
SstI GAGCTC 1 cut(s) 985
StuI AGGCCT 1 cut(s) 233
StyD4I CCNGG 4 cut(s) 220, 237, 736, 955
TaaI ACNGT 2 cut(s) 781, 812
TaqI TCGA 3 cut(s) 114, 336, 347
TasI AATT 2 cut(s) 15, 832
TatI WGTACW 1 cut(s) 823
TauI GCSGC 3 cut(s) 53, 83, 86
TfiI GAWTC 3 cut(s) 344, 382, 413
Tru1I TTAA 2 cut(s) 699, 744
Tru9I TTAA 2 cut(s) 699, 744
TscAI CASTG 4 cut(s) 292, 817, 823, 915
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 4 cut(s) 47, 217, 305, 971
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 4 cut(s) 148, 482, 767, 778
TspGWI ACGGA 1 cut(s) 380
TspRI CASTG 4 cut(s) 292, 817, 823, 915
Tth111I GACNNNGTC 1 cut(s) 143
VpaK11BI GGWCC 2 cut(s) 145, 518
XapI RAATTY 1 cut(s) 15
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 1 cut(s) 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.