MD11G1102700.v1.1

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0001869
Physical Location & Seq
Forward (+)
8663708 .. 8664277
570 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1102700.v1.1.491

Sequence Viewer

Length: 456 bp
ATGATTGCATGTTATTTGGAGAGGATGACCACTTGTTGCATTACAACTACCAATGAGACTTTCTCCATTGGGGATTGTGTCCTGATTAATCATGATAGTGCAATAGTGAACGATCAGCCATGGATGACGGTCATCCCGTGTTTCAGTCATAATAAAAAGAAAGCGATGGTGAGATGGTTCTATAGGTCAGAGGATGCCCTTGAAAAGCATCCTCCTTTCTTTGGAAATGATGAGCTCATATGGTCTAATCATCGTGATCATGTGAGCATTGATAACATTCTCGGAAAGTGTAATGTCCACACTCTTGATGAGTACGTAAAACTCCAAACGGTAACATATGAGGATTACTATTGGAGATTTAGGTACTTGCCTTCCAGGAAAGGGTATTGCACTTGTCAGATGCCGTATAACCCAGATAATCTCATGGTGTGGTGTGAGGCATGCAAGGAGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

152

Amino Acids

18.0

Weight (kDa)

5.82

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 19 - 128 9.9e-13 BAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 314, 365
AfiI CCNNNNNNNGG 2 cut(s) 221, 381
AgsI TTSAA 1 cut(s) 203
AjnI CCWGG 1 cut(s) 374
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 50
AseI ATTAAT 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 181
BanII GRGCYC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 237
BccI CCATC 2 cut(s) 160, 168
BceAI ACGGC 1 cut(s) 388
BciT130I CCWGG 1 cut(s) 376
BclI TGATCA 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 376
BmrFI CCNGG 1 cut(s) 376
BmsI GCATC 3 cut(s) 184, 217, 390
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BsaAI YACGTR 1 cut(s) 316
BsaJI CCNNGG 1 cut(s) 119
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 381
BseBI CCWGG 1 cut(s) 376
BseDI CCNNGG 1 cut(s) 119
BseGI GGATG 5 cut(s) 30, 129, 132, 199, 208
BseLI CCNNNNNNNGG 2 cut(s) 221, 381
BsiHKAI GWGCWC 1 cut(s) 237
BslI CCNNNNNNNGG 2 cut(s) 221, 381
BsmAI GTCTC 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 2 cut(s) 112, 256
Bsp19I CCATGG 1 cut(s) 119
BspHI TCATGA 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 119
BssMI GATC 2 cut(s) 112, 256
BssT1I CCWWGG 1 cut(s) 119
Bst2UI CCWGG 1 cut(s) 376
Bst4CI ACNGT 2 cut(s) 130, 331
BstBAI YACGTR 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 442
BstDSI CCRYGG 1 cut(s) 119
BstF5I GGATG 5 cut(s) 30, 129, 132, 199, 208
BstKTI GATC 2 cut(s) 115, 259
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 2 cut(s) 112, 256
BstNI CCWGG 1 cut(s) 376
BstNSI RCATGY 2 cut(s) 12, 444
BstSCI CCNGG 1 cut(s) 374
BstSFI CTRYAG 1 cut(s) 181
BstSNI TACGTA 1 cut(s) 316
BtgI CCRYGG 1 cut(s) 119
BtgZI GCGATG 1 cut(s) 179
BtsCI GGATG 5 cut(s) 30, 129, 132, 199, 208
Cac8I GCNNGC 1 cut(s) 442
CciI TCATGA 1 cut(s) 91
Csp6I GTAC 2 cut(s) 313, 364
CviAII CATG 6 cut(s) 9, 92, 120, 260, 424, 441
CviJI RGCY 2 cut(s) 118, 235
CviKI_1 RGCY 2 cut(s) 118, 235
CviQI GTAC 2 cut(s) 313, 364
DpnI GATC 2 cut(s) 114, 258
DpnII GATC 2 cut(s) 112, 256
Ecl136II GAGCTC 1 cut(s) 235
Eco105I TACGTA 1 cut(s) 316
Eco130I CCWWGG 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 235
EcoICRI GAGCTC 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 374
EcoT14I CCWWGG 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 119
FaeI CATG 6 cut(s) 12, 95, 123, 263, 427, 444
FatI CATG 6 cut(s) 8, 91, 119, 259, 423, 440
FauNDI CATATG 2 cut(s) 239, 337
FbaI TGATCA 1 cut(s) 256
FokI GGATG 5 cut(s) 37, 119, 136, 195, 206
FriOI GRGCYC 1 cut(s) 237
Hin1II CATG 6 cut(s) 12, 95, 123, 263, 427, 444
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 2 cut(s) 109, 298
Hpy188I TCNGA 3 cut(s) 190, 284, 399
Hpy188III TCNNGA 4 cut(s) 82, 92, 254, 305
Hpy8I GTNNAC 2 cut(s) 109, 298
HpyAV CCTTC 1 cut(s) 381
HpyCH4III ACNGT 2 cut(s) 130, 331
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 5 cut(s) 8, 39, 101, 390, 444
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 6 cut(s) 12, 95, 123, 263, 427, 444
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 2 cut(s) 112, 256
LpnPI CCDG 4 cut(s) 95, 361, 388, 426
LweI GCATC 3 cut(s) 184, 217, 390
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 1 cut(s) 331
MalI GATC 2 cut(s) 114, 258
MboI GATC 2 cut(s) 112, 256
MhlI GDGCHC 1 cut(s) 237
MnlI CCTC 5 cut(s) 15, 184, 222, 334, 430
MseI TTAA 1 cut(s) 87
MslI CAYNNNNRTG 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 376
MvaI CCWGG 1 cut(s) 376
NcoI CCATGG 1 cut(s) 119
NdeI CATATG 2 cut(s) 239, 337
NdeII GATC 2 cut(s) 112, 256
NlaIII CATG 6 cut(s) 12, 95, 123, 263, 427, 444
NspI RCATGY 2 cut(s) 12, 444
PaeI GCATGC 1 cut(s) 444
PagI TCATGA 1 cut(s) 91
PcsI WCGNNNNNNNCGW 1 cut(s) 134
PfoI TCCNGGA 1 cut(s) 374
Ppu21I YACGTR 1 cut(s) 316
PshBI ATTAAT 1 cut(s) 87
Psp124BI GAGCTC 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 374
PspGI CCWGG 1 cut(s) 374
RsaI GTAC 2 cut(s) 314, 365
RsaNI GTAC 2 cut(s) 313, 364
RseI CAYNNNNRTG 1 cut(s) 96
SacI GAGCTC 1 cut(s) 237
SaqAI TTAA 1 cut(s) 87
Sau3AI GATC 2 cut(s) 112, 256
ScrFI CCNGG 1 cut(s) 376
SduI GDGCHC 1 cut(s) 237
SetI ASST 4 cut(s) 188, 237, 318, 365
SfaNI GCATC 3 cut(s) 184, 217, 390
SfcI CTRYAG 1 cut(s) 181
SmiMI CAYNNNNRTG 1 cut(s) 96
SnaBI TACGTA 1 cut(s) 316
SphI GCATGC 1 cut(s) 444
SstI GAGCTC 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 374
StyI CCWWGG 1 cut(s) 119
TaaI ACNGT 2 cut(s) 130, 331
TaiI ACGT 1 cut(s) 318
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
VspI ATTAAT 1 cut(s) 87
XceI RCATGY 2 cut(s) 12, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.