MD05G1352300.v1.1

BAH and coiled-coil domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
46884053 .. 46886314
2262 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1352300.v1.1.491

Sequence Viewer

Length: 879 bp
ATGGGACCCCATAAAGGTCAAGCGTCGCACTCGCTTCTGTGCTCTCTCTCTCTCTCTCTCTCTAGTCTCCATGAGAAGAAGGGTCTAGACTCTAGGGTTTTCCGGTCTGAATTCTCCCTCGCAAATGTTCAAAATTATAGGGCTTTGAAATCAAACCAGTTTCCGCCATTGAAATTGATTCAAAGTTCCCACATTTTCCACCACCAGAACTTCCCAGAAAAGACCCACATGGCCAGAACCAGACCAGGAAAAAAGGAGTCAAAGGACGCGGACTCTTACACTATCAGGGGCACCAACAAAATCGTCAGAGCTGGGGATACCGTCCTGATGCGCCCGTCGGACACCGGAAAGCCGCCGTACGTGGCGCGCATCGAGAAGATCGAAGGTGAAAGTCGAGGCGGCATGAAAGTGAGAGTGAGGTGGTATTACAGGCCGGAGGAGTCGATTGGAGGGCGGAGGCAGTTCCATGGAGCCAAAGAGTTGTTCTTGTCCGACCACTATGATGTGCAGAGCGCTCACACCATTGAAGGCAAGTGTACAGTGCACTCCTTCAAGAACTACACTAAGCTGGAGAATGTTGGAGCTGAAGATTACTACTGTAGATTTGAGTACAAAGCTGCTACTGGAGCGTTCTCCCCCGACCGAGTTGCTGTGTATTGCAAGTGTGAGATGCCGTATAACCCGGATGACCTCATGGTACAATGTGAGGGGTGTAAGGACTGGTACCATCCTGCTTGTGTGGCCATGACTATTGTGGAAGCAAAAAAATTGGAAAGCTTTTTGTGTTCCGAGTGTTCAGCTGAAGGGGACGGGAAAAAGCCCCAGAATGCAGTTCCAGCAGCTGTCGCGAAGCTCGAGCCCAAGCGCCGTAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

293

Amino Acids

33.01

Weight (kDa)

9.21

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 102 - 213 2.2e-23 BAH domain
PHD PF00628 220 - 265 9.8e-09 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 723
AccB1I GGYRCC 2 cut(s) 290, 723
AccII CGCG 3 cut(s) 269, 367, 848
AciI CCGC 5 cut(s) 164, 269, 353, 399, 454
AcoI YGGCCR 2 cut(s) 231, 741
AcsI RAATTY 1 cut(s) 110
AcuI CTGAAG 2 cut(s) 606, 822
AfaI GTAC 5 cut(s) 359, 538, 611, 699, 725
AfeI AGCGCT 1 cut(s) 514
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 6 cut(s) 131, 148, 172, 182, 527, 553
AjnI CCWGG 1 cut(s) 244
AjuI GAANNNNNNNTTGG 2 cut(s) 467, 499
AluBI AGCT 8 cut(s) 311, 568, 584, 617, 777, 800, 842, 853
AluI AGCT 8 cut(s) 311, 568, 584, 617, 777, 800, 842, 853
Alw21I GWGCWC 2 cut(s) 44, 546
Alw26I GTCTC 1 cut(s) 71
Alw44I GTGCAC 1 cut(s) 542
AlwNI CAGNNNCTG 1 cut(s) 842
Ama87I CYCGRG 1 cut(s) 854
Aor51HI AGCGCT 1 cut(s) 514
AoxI GGCC 3 cut(s) 231, 431, 741
ApaLI GTGCAC 1 cut(s) 542
ApeKI GCWGC 2 cut(s) 617, 839
ApoI RAATTY 1 cut(s) 110
Asp718I GGTACC 1 cut(s) 723
AspLEI GCGC 5 cut(s) 333, 367, 369, 515, 867
AspS9I GGNCC 1 cut(s) 5
AsuC2I CCSGG 1 cut(s) 683
AsuHPI GGTGA 1 cut(s) 398
AvaI CYCGRG 1 cut(s) 854
AvaII GGWCC 1 cut(s) 5
BaeGI GKGCMC 2 cut(s) 293, 546
BalI TGGCCA 2 cut(s) 233, 743
BanI GGYRCC 2 cut(s) 290, 723
BanII GRGCYC 1 cut(s) 861
Bbv12I GWGCWC 2 cut(s) 44, 546
BbvI GCAGC 2 cut(s) 604, 851
BccI CCATC 1 cut(s) 735
BceAI ACGGC 3 cut(s) 340, 658, 852
BcgI CGANNNNNNTGC 2 cut(s) 629, 663
BciT130I CCWGG 1 cut(s) 246
BciVI GTATCC 1 cut(s) 310
BcnI CCSGG 1 cut(s) 683
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 3 cut(s) 63, 86, 93
BfmI CTRYAG 1 cut(s) 598
BfoI RGCGCY 2 cut(s) 516, 868
BfuI GTATCC 1 cut(s) 310
BisI GCNGC 4 cut(s) 353, 400, 618, 840
BlsI GCNGC 4 cut(s) 354, 401, 619, 841
Bme1390I CCNGG 2 cut(s) 246, 683
Bme18I GGWCC 1 cut(s) 5
BmeT110I CYCGRG 1 cut(s) 854
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 5 cut(s) 6, 7, 292, 472, 725
BmrFI CCNGG 2 cut(s) 246, 683
BmsI GCATC 3 cut(s) 318, 378, 660
BpmI CTGGAG 2 cut(s) 590, 645
BpuMI CCSGG 1 cut(s) 683
BsaAI YACGTR 1 cut(s) 361
BsaJI CCNNGG 1 cut(s) 466
BsaWI WCCGGW 2 cut(s) 102, 344
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse1I ACTGG 3 cut(s) 157, 628, 725
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 466
BseGI GGATG 2 cut(s) 691, 727
BseLI CCNNNNNNNGG 1 cut(s) 14
BseNI ACTGG 3 cut(s) 157, 628, 725
BsePI GCGCGC 1 cut(s) 365
BseRI GAGGAG 1 cut(s) 452
BseSI GKGCMC 2 cut(s) 293, 546
BseXI GCAGC 2 cut(s) 604, 851
BseYI CCCAGC 1 cut(s) 311
BsgI GTGCAG 1 cut(s) 527
Bsh1236I CGCG 3 cut(s) 269, 367, 848
Bsh1285I CGRYCG 1 cut(s) 643
BshFI GGCC 3 cut(s) 233, 433, 743
BshNI GGYRCC 2 cut(s) 290, 723
BsiEI CGRYCG 1 cut(s) 643
BsiHKAI GWGCWC 2 cut(s) 44, 546
BsiHKCI CYCGRG 1 cut(s) 854
BsiSI CCGG 4 cut(s) 103, 345, 434, 683
BsiWI CGTACG 1 cut(s) 357
BslFI GGGAC 2 cut(s) 18, 821
BslI CCNNNNNNNGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 2 cut(s) 18, 821
BsmI GAATGC 1 cut(s) 832
BsnI GGCC 3 cut(s) 233, 433, 743
BsoBI CYCGRG 1 cut(s) 854
Bsp1286I GDGCHC 4 cut(s) 44, 293, 546, 861
Bsp1407I TGTACA 1 cut(s) 536
Bsp143I GATC 1 cut(s) 378
Bsp19I CCATGG 1 cut(s) 466
Bsp68I TCGCGA 1 cut(s) 848
BspACI CCGC 5 cut(s) 164, 269, 353, 399, 454
BspANI GGCC 3 cut(s) 233, 433, 743
BspFNI CGCG 3 cut(s) 269, 367, 848
BspLI GGNNCC 5 cut(s) 6, 7, 292, 472, 725
BspT107I GGYRCC 2 cut(s) 290, 723
BsrGI TGTACA 1 cut(s) 536
BsrI ACTGG 3 cut(s) 157, 628, 725
BssECI CCNNGG 1 cut(s) 466
BssHII GCGCGC 1 cut(s) 365
BssMI GATC 1 cut(s) 378
BssT1I CCWWGG 1 cut(s) 466
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 3 cut(s) 322, 541, 599
BstAUI TGTACA 1 cut(s) 536
BstBAI YACGTR 1 cut(s) 361
BstC8I GCNNGC 1 cut(s) 367
BstDEI CTNAG 1 cut(s) 564
BstDSI CCRYGG 1 cut(s) 466
BstF5I GGATG 2 cut(s) 691, 727
BstFNI CGCG 3 cut(s) 269, 367, 848
BstH2I RGCGCY 2 cut(s) 516, 868
BstHHI GCGC 5 cut(s) 333, 367, 369, 515, 867
BstKTI GATC 1 cut(s) 381
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 1 cut(s) 378
BstMCI CGRYCG 1 cut(s) 643
BstMWI GCNNNNNNNGC 4 cut(s) 626, 740, 836, 845
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 2 cut(s) 244, 681
BstSFI CTRYAG 1 cut(s) 598
BstSLI GKGCMC 2 cut(s) 293, 546
BstUI CGCG 3 cut(s) 269, 367, 848
BstV1I GCAGC 2 cut(s) 604, 851
BsuI GTATCC 1 cut(s) 310
BsuRI GGCC 3 cut(s) 233, 433, 743
BtgI CCRYGG 1 cut(s) 466
BtsCI GGATG 2 cut(s) 691, 727
BtsIMutI CAGTG 1 cut(s) 546
BtuMI TCGCGA 1 cut(s) 848
Cac8I GCNNGC 1 cut(s) 367
CaiI CAGNNNCTG 1 cut(s) 842
CfoI GCGC 5 cut(s) 333, 367, 369, 515, 867
Cfr13I GGNCC 1 cut(s) 5
CseI GACGC 2 cut(s) 12, 275
Csp6I GTAC 5 cut(s) 358, 537, 610, 698, 724
CviAII CATG 6 cut(s) 71, 229, 403, 467, 694, 745
CviQI GTAC 5 cut(s) 358, 537, 610, 698, 724
DdeI CTNAG 1 cut(s) 564
DpnI GATC 1 cut(s) 380
DpnII GATC 1 cut(s) 378
EaeI YGGCCR 2 cut(s) 231, 741
EciI GGCGGA 2 cut(s) 153, 469
Eco130I CCWWGG 1 cut(s) 466
Eco24I GRGCYC 1 cut(s) 861
Eco47I GGWCC 1 cut(s) 5
Eco47III AGCGCT 1 cut(s) 514
Eco57I CTGAAG 2 cut(s) 606, 822
Eco88I CYCGRG 1 cut(s) 854
EcoO109I RGGNCCY 1 cut(s) 5
EcoRI GAATTC 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 466
EcoT38I GRGCYC 1 cut(s) 861
ErhI CCWWGG 1 cut(s) 466
FaeI CATG 6 cut(s) 74, 232, 406, 470, 697, 748
FaqI GGGAC 2 cut(s) 18, 821
FatI CATG 6 cut(s) 70, 228, 402, 466, 693, 744
Fnu4HI GCNGC 4 cut(s) 353, 400, 618, 840
FokI GGATG 2 cut(s) 698, 714
FriOI GRGCYC 1 cut(s) 861
Fsp4HI GCNGC 4 cut(s) 353, 400, 618, 840
FspBI CTAG 3 cut(s) 63, 86, 93
GlaI GCGC 5 cut(s) 332, 366, 368, 514, 866
GluI GCNGC 4 cut(s) 353, 400, 618, 840
GsaI CCCAGC 1 cut(s) 315
GsuI CTGGAG 2 cut(s) 590, 645
HaeII RGCGCY 2 cut(s) 516, 868
HaeIII GGCC 3 cut(s) 233, 433, 743
HapII CCGG 4 cut(s) 103, 345, 434, 683
HgaI GACGC 2 cut(s) 12, 275
HhaI GCGC 5 cut(s) 333, 367, 369, 515, 867
Hin1II CATG 6 cut(s) 74, 232, 406, 470, 697, 748
Hin6I GCGC 5 cut(s) 331, 365, 367, 513, 865
HinP1I GCGC 5 cut(s) 331, 365, 367, 513, 865
HindIII AAGCTT 1 cut(s) 775
HinfI GANTC 5 cut(s) 89, 178, 257, 272, 440
HpaII CCGG 4 cut(s) 103, 345, 434, 683
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 2 cut(s) 537, 544
Hpy188I TCNGA 5 cut(s) 109, 308, 340, 493, 790
Hpy188III TCNNGA 5 cut(s) 86, 325, 373, 553, 847
Hpy8I GTNNAC 2 cut(s) 537, 544
Hpy99I CGWCG 2 cut(s) 28, 340
HpyAV CCTTC 5 cut(s) 73, 377, 521, 559, 797
HpyCH4III ACNGT 3 cut(s) 322, 541, 599
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 4 cut(s) 508, 544, 660, 830
HpyF10VI GCNNNNNNNGC 4 cut(s) 626, 740, 836, 845
HpyF3I CTNAG 1 cut(s) 564
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 6 cut(s) 74, 232, 406, 470, 697, 748
HspAI GCGC 5 cut(s) 331, 365, 367, 513, 865
KflI GGGWCCC 1 cut(s) 5
KpnI GGTACC 1 cut(s) 727
Kzo9I GATC 1 cut(s) 378
LmnI GCTCC 3 cut(s) 470, 581, 626
Lsp1109I GCAGC 2 cut(s) 604, 851
LweI GCATC 3 cut(s) 318, 378, 660
MaeI CTAG 3 cut(s) 63, 86, 93
MaeII ACGT 1 cut(s) 360
MalI GATC 1 cut(s) 380
MboI GATC 1 cut(s) 378
MboII GAAGA 3 cut(s) 88, 388, 599
MhlI GDGCHC 4 cut(s) 44, 293, 546, 861
MlsI TGGCCA 2 cut(s) 233, 743
MluCI AATT 4 cut(s) 110, 133, 173, 767
MluNI TGGCCA 2 cut(s) 233, 743
MlyI GAGTC 4 cut(s) 83, 266, 266, 449
MmeI TCCRAC 3 cut(s) 318, 516, 559
MnlI CCTC 8 cut(s) 128, 389, 411, 430, 443, 450, 700, 701
Mox20I TGGCCA 2 cut(s) 233, 743
MscI TGGCCA 2 cut(s) 233, 743
MslI CAYNNNNRTG 2 cut(s) 407, 501
Msp20I TGGCCA 2 cut(s) 233, 743
MspA1I CMGCKG 2 cut(s) 800, 842
MspI CCGG 4 cut(s) 103, 345, 434, 683
MspR9I CCNGG 2 cut(s) 246, 683
Mva1269I GAATGC 1 cut(s) 832
MvaI CCWGG 1 cut(s) 246
MvnI CGCG 3 cut(s) 269, 367, 848
MwoI GCNNNNNNNGC 4 cut(s) 626, 740, 836, 845
NciI CCSGG 1 cut(s) 683
NcoI CCATGG 1 cut(s) 466
NdeII GATC 1 cut(s) 378
NlaIII CATG 6 cut(s) 74, 232, 406, 470, 697, 748
NlaIV GGNNCC 5 cut(s) 6, 7, 292, 472, 725
NruI TCGCGA 1 cut(s) 848
PaeR7I CTCGAG 1 cut(s) 854
PauI GCGCGC 1 cut(s) 365
PcsI WCGNNNNNNNCGW 2 cut(s) 378, 852
PctI GAATGC 1 cut(s) 832
PfeI GAWTC 1 cut(s) 178
Pfl23II CGTACG 1 cut(s) 357
PkrI GCNGC 4 cut(s) 354, 401, 619, 841
PleI GAGTC 4 cut(s) 83, 265, 266, 448
PpsI GAGTC 4 cut(s) 83, 265, 266, 448
Ppu21I YACGTR 1 cut(s) 361
PpuMI RGGWCCY 1 cut(s) 5
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 1 cut(s) 244
PspFI CCCAGC 1 cut(s) 311
PspGI CCWGG 1 cut(s) 244
PspLI CGTACG 1 cut(s) 357
PspN4I GGNNCC 5 cut(s) 6, 7, 292, 472, 725
PspPI GGNCC 1 cut(s) 5
PspPPI RGGWCCY 1 cut(s) 5
PspXI VCTCGAGB 1 cut(s) 854
PstNI CAGNNNCTG 1 cut(s) 842
PteI GCGCGC 1 cut(s) 365
PvuII CAGCTG 2 cut(s) 800, 842
RruI TCGCGA 1 cut(s) 848
RsaI GTAC 5 cut(s) 359, 538, 611, 699, 725
RsaNI GTAC 5 cut(s) 358, 537, 610, 698, 724
RseI CAYNNNNRTG 2 cut(s) 407, 501
SatI GCNGC 4 cut(s) 353, 400, 618, 840
Sau3AI GATC 1 cut(s) 378
Sau96I GGNCC 1 cut(s) 5
SchI GAGTC 4 cut(s) 83, 266, 266, 449
ScrFI CCNGG 2 cut(s) 246, 683
SduI GDGCHC 4 cut(s) 44, 293, 546, 861
SfaNI GCATC 3 cut(s) 318, 378, 660
SfcI CTRYAG 1 cut(s) 598
Sfr274I CTCGAG 1 cut(s) 854
SinI GGWCC 1 cut(s) 5
SlaI CTCGAG 1 cut(s) 854
SmiMI CAYNNNNRTG 2 cut(s) 407, 501
SmlI CTYRAG 1 cut(s) 854
SmoI CTYRAG 1 cut(s) 854
Sse9I AATT 4 cut(s) 110, 133, 173, 767
SsiI CCGC 5 cut(s) 164, 269, 353, 399, 454
SspMI CTAG 3 cut(s) 63, 86, 93
StyD4I CCNGG 2 cut(s) 244, 681
StyI CCWWGG 1 cut(s) 466
TaaI ACNGT 3 cut(s) 322, 541, 599
TaiI ACGT 1 cut(s) 363
TaqI TCGA 5 cut(s) 372, 381, 394, 443, 855
TaqII GACCGA 1 cut(s) 657
TasI AATT 4 cut(s) 110, 133, 173, 767
TatI WGTACW 2 cut(s) 536, 609
TauI GCSGC 2 cut(s) 355, 402
TfiI GAWTC 1 cut(s) 178
TscAI CASTG 1 cut(s) 546
TseI GCWGC 2 cut(s) 617, 839
TspDTI ATGAA 1 cut(s) 419
TspRI CASTG 1 cut(s) 546
VneI GTGCAC 1 cut(s) 542
VpaK11BI GGWCC 1 cut(s) 5
XapI RAATTY 1 cut(s) 110
XbaI TCTAGA 1 cut(s) 85
XcmI CCANNNNNNNNNTGG 1 cut(s) 751
XhoI CTCGAG 1 cut(s) 854
XspI CTAG 3 cut(s) 63, 86, 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.