Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001869

Physical Location & Seq

Genomic Coordinates Forward (+)

30233778 .. 30240579

Gene Structure 6802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00024330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGTCTGACTACTATGATGTTCAAAGTGCTAACACCATTGAGGGAAAGTGTGTGGTTCACTCGTTCACGAACTACACGAAGCACAAAAATGTGGGAGCTGAGGATTACTACTGTAGATTTGAGTACAAGGCTGCTGCTAGGGCTTTTACTCCTAATACAGTTGCTATTGCTCGAGAATATTTTCCAAAATTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH PHD

Protein Analysis

65

Amino Acids

7.52

Weight (kDa)

7.77

Isoelectric Point (pI)

35.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04260 AT4G22140 AT4G22140 AT4G22140
fragaria_vesca	FvH4_3g01411 FvH4_6g42580
malus_domestica	MD05G1352300.v1.1 MD09G1112400.v1.1 MD10G1326300.v1.1 MD11G1102600.v1.1 MD11G1102700.v1.1 MD17G1102500.v1.1
prunus_persica	Prupe.3G212300_v2.0.a1 Prupe.3G212300_v2.0.a1 Prupe.3G212300_v2.0.a1 Prupe.3G212300_v2.0.a1 Prupe.4G015400_v2.0.a1
pyrus_communis	pycom05g31920 pycom10g27630 pycom17g09690
rosa_chinensis	RchiOBHm_Chr2g0158431 RchiOBHm_Chr5g0002141
rosa_laevigata	RLG00000021087 RLG00000026695 RLG00000031000
rosa_multiflora	Rmu_sc0004855.1_g000006 Rmu_ssc0000001.1_g000006
rosa_roxburghii	Rroxscaffold_1G00024330 Rroxscaffold_1G00073770 Rroxscaffold_2G00091380
rosa_rugosa	Rorug02G0468700 Rorug02G0468800 Rorug02G0468900 Rorug04G0394600
rosa_samantha	Rh2AG534800 Rh2BG548200 Rh2CG518600 Rh2DG557800 Rh5AG016400 Rh5BG019900 Rh5CG017700 Rh5CG364100 Rh5CG364200 Rh5DG017900
rosa_wichuraiana	Rw2G044290 Rw5G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	188
AfaI	GTAC	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	23
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
Ama87I	CYCGRG	1 cut(s)	171
ApeKI	GCWGC	2 cut(s)	131, 134
ApoI	RAATTY	1 cut(s)	188
Asp700I	GAANNNNTTC	1 cut(s)	180
AvaI	CYCGRG	1 cut(s)	171
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	2 cut(s)	118, 121
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	112
BisI	GCNGC	2 cut(s)	132, 135
BlsI	GCNGC	2 cut(s)	133, 136
BmeT110I	CYCGRG	1 cut(s)	171
Bpu10I	CCTNAGC	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	90
BseXI	GCAGC	2 cut(s)	118, 121
BsiHKCI	CYCGRG	1 cut(s)	171
BsoBI	CYCGRG	1 cut(s)	171
BspCNI	CTCAG	1 cut(s)	91
Bst4CI	ACNGT	2 cut(s)	113, 160
BstDEI	CTNAG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstSFI	CTRYAG	1 cut(s)	112
BstV1I	GCAGC	2 cut(s)	118, 121
Csp6I	GTAC	1 cut(s)	124
CviJI	RGCY	3 cut(s)	98, 131, 143
CviKI_1	RGCY	3 cut(s)	98, 131, 143
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	1 cut(s)	99
Eco88I	CYCGRG	1 cut(s)	171
FaiI	YATR	2 cut(s)	15, 196
Fnu4HI	GCNGC	2 cut(s)	132, 135
Fsp4HI	GCNGC	2 cut(s)	132, 135
FspBI	CTAG	1 cut(s)	138
GluI	GCNGC	2 cut(s)	132, 135
Hpy166II	GTNNAC	2 cut(s)	58, 66
Hpy188I	TCNGA	1 cut(s)	7
Hpy188III	TCNNGA	2 cut(s)	67, 173
Hpy8I	GTNNAC	2 cut(s)	58, 66
HpyCH4III	ACNGT	2 cut(s)	113, 160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	1 cut(s)	99
LmnI	GCTCC	1 cut(s)	95
Lsp1109I	GCAGC	2 cut(s)	118, 121
MaeI	CTAG	1 cut(s)	138
MluCI	AATT	1 cut(s)	188
MnlI	CCTC	2 cut(s)	34, 94
MroXI	GAANNNNTTC	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	140
PaeR7I	CTCGAG	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PdmI	GAANNNNTTC	1 cut(s)	180
PkrI	GCNGC	2 cut(s)	133, 136
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	87
SatI	GCNGC	2 cut(s)	132, 135
SetI	ASST	1 cut(s)	100
SfcI	CTRYAG	1 cut(s)	112
Sfr274I	CTCGAG	1 cut(s)	171
SgeI	CNNG	7 cut(s)	73, 79, 88, 139, 150, 183, 185
SlaI	CTCGAG	1 cut(s)	171
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
Sse9I	AATT	1 cut(s)	188
SspI	AATATT	1 cut(s)	179
SspMI	CTAG	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	113, 160
TaqI	TCGA	1 cut(s)	172
TasI	AATT	1 cut(s)	188
TatI	WGTACW	1 cut(s)	123
TseI	GCWGC	2 cut(s)	131, 134
TspDTI	ATGAA	1 cut(s)	183
XapI	RAATTY	1 cut(s)	188
XhoI	CTCGAG	1 cut(s)	171
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.