MD11G1102600.v1.1

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0001869
Physical Location & Seq
Reverse (-)
8659973 .. 8660460
488 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1102600.v1.1.491

Sequence Viewer

Length: 303 bp
ATGATTAATCATGATGGTGCAATAGTGAACGATCAGCCATGGGTGGCGGCCATCCTGCGTTTTAGTCACAATAAAAAGAAAGTGATGGTGAGGTGGTTCTATAGGTCAGATGATGCCCTTGAAAAGCGTCCTCCTTTCTTTGGAAAGGATGAGCTCATATGGTTTAATCATCGTGATACTATGAGCATTGATACCATTCTCGGAAAGTGTAATGTCCACACTCTTGATGAGTATTGCACTTGTCAGATACCGTATAACCCAGATAATCTCATGGTGTGCTGTGAGGCATGCAAGGAGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

101

Amino Acids

11.84

Weight (kDa)

6.03

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 18 - 97 4.7e-11 BAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 47
AcoI YGGCCR 1 cut(s) 48
AfiI CCNNNNNNNGG 1 cut(s) 140
AgsI TTSAA 1 cut(s) 122
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw21I GWGCWC 1 cut(s) 156
AoxI GGCC 1 cut(s) 48
AseI ATTAAT 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 100
BanII GRGCYC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 156
BccI CCATC 3 cut(s) 8, 59, 79
BfmI CTRYAG 1 cut(s) 100
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
BmsI GCATC 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 2 cut(s) 51, 154
BseLI CCNNNNNNNGG 1 cut(s) 140
BshFI GGCC 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 140
BsnI GGCC 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 1 cut(s) 31
Bsp19I CCATGG 1 cut(s) 38
BspACI CCGC 1 cut(s) 47
BspANI GGCC 1 cut(s) 50
BspHI TCATGA 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 1 cut(s) 31
BssT1I CCWWGG 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 289
BstDSI CCRYGG 1 cut(s) 38
BstF5I GGATG 2 cut(s) 51, 154
BstKTI GATC 1 cut(s) 34
BstMBI GATC 1 cut(s) 31
BstNSI RCATGY 1 cut(s) 291
BstSFI CTRYAG 1 cut(s) 100
BsuRI GGCC 1 cut(s) 50
BtgI CCRYGG 1 cut(s) 38
BtsCI GGATG 2 cut(s) 51, 154
Cac8I GCNNGC 1 cut(s) 289
CciI TCATGA 1 cut(s) 10
CseI GACGC 1 cut(s) 116
CviAII CATG 4 cut(s) 11, 39, 271, 288
CviJI RGCY 3 cut(s) 37, 50, 154
CviKI_1 RGCY 3 cut(s) 37, 50, 154
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
EaeI YGGCCR 1 cut(s) 48
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 156
Eco53kI GAGCTC 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 38
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 4 cut(s) 14, 42, 274, 291
FaiI YATR 9 cut(s) 12, 40, 102, 158, 160, 182, 255, 272, 289
FatI CATG 4 cut(s) 10, 38, 270, 287
FauNDI CATATG 1 cut(s) 158
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 2 cut(s) 38, 161
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 48
HaeIII GGCC 1 cut(s) 50
HgaI GACGC 1 cut(s) 116
Hin1II CATG 4 cut(s) 14, 42, 274, 291
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 2 cut(s) 28, 217
Hpy188I TCNGA 3 cut(s) 109, 203, 246
Hpy188III TCNNGA 3 cut(s) 11, 173, 224
Hpy8I GTNNAC 2 cut(s) 28, 217
HpyCH4III ACNGT 1 cut(s) 252
HpyCH4V TGCA 3 cut(s) 20, 237, 291
Hsp92II CATG 4 cut(s) 14, 42, 274, 291
Kzo9I GATC 1 cut(s) 31
LpnPI CCDG 2 cut(s) 68, 273
LweI GCATC 1 cut(s) 103
MaeIII GTNAC 1 cut(s) 65
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 156
MnlI CCTC 3 cut(s) 84, 141, 277
MseI TTAA 2 cut(s) 6, 165
MslI CAYNNNNRTG 1 cut(s) 15
NcoI CCATGG 1 cut(s) 38
NdeI CATATG 1 cut(s) 158
NdeII GATC 1 cut(s) 31
NlaIII CATG 4 cut(s) 14, 42, 274, 291
NmuCI GTSAC 1 cut(s) 65
NspI RCATGY 1 cut(s) 291
PaeI GCATGC 1 cut(s) 291
PagI TCATGA 1 cut(s) 10
PkrI GCNGC 1 cut(s) 49
PshBI ATTAAT 1 cut(s) 6
Psp124BI GAGCTC 1 cut(s) 156
RseI CAYNNNNRTG 1 cut(s) 15
SacI GAGCTC 1 cut(s) 156
SaqAI TTAA 2 cut(s) 6, 165
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 1 cut(s) 31
SduI GDGCHC 1 cut(s) 156
SetI ASST 3 cut(s) 95, 107, 156
SfaNI GCATC 1 cut(s) 103
SfcI CTRYAG 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 15
SphI GCATGC 1 cut(s) 291
SsiI CCGC 1 cut(s) 47
SstI GAGCTC 1 cut(s) 156
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 252
TauI GCSGC 1 cut(s) 50
Tru1I TTAA 2 cut(s) 6, 165
Tru9I TTAA 2 cut(s) 6, 165
TseFI GTSAC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 65
VspI ATTAAT 1 cut(s) 6
XceI RCATGY 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.