Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001869

Physical Location & Seq

Genomic Coordinates Forward (+)

21668895 .. 21673418

Gene Structure 4524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G212300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCCAAGACCAAACCTGGAAAAAAGGACCTGGACTCTTACACCATCAAGGGCACCACCAAAGTCGTTCGAACTGGTGATTGTGTGTTAATGCGACCATCGGACTCCGATAAGCCTCCATATGTGGCACGCGTGGAGAAGATCGAAGCGGACCACCGCAACAACGTGAAGGTTCGGGTTCGATGGTATTATCGACCTGAGGAGTCCATCGGAGGGCGAAGACAGTTCCATGGAGCCAAGGAGCTGTTTCTATCAGACCACTATGATGTGCAGAGTGCACACACTATAGAAGGGAAGTGTACGGTGCACTCCTTCAAGAACTACACTAAGCTTGAGAATGTGGGAGCCGAGGATTACTTCTGTAGGTTTGAGTACAAGGCTTCCACTGGAGGGTTCACACCAGACCGCGTGGCTGTGTATTGTAAATGTGAGATGCCATACAATCCGGATGACCTTATGGTGCAGTGTGAGGGATGCAAGGACTGGTTTCATCCCTCTTGTATGGGTATGACCATTGAAGATGCAAAAAAGTTGGAGCACTTCTTGTGTTCTGACTGCTCATCTGATGATGATGCCAAAAGATCTTTGAATACATTCCCAGTATCACCATCTGTTGAGGCTAAGGTGGAGCCAAAGCGCAGGAAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032991 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH PHD

Protein Analysis

217

Amino Acids

24.79

Weight (kDa)

8.45

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04260 AT4G22140 AT4G22140 AT4G22140
fragaria_vesca	FvH4_3g01411 FvH4_6g42580
malus_domestica	MD05G1352300.v1.1 MD09G1112400.v1.1 MD10G1326300.v1.1 MD11G1102600.v1.1 MD11G1102700.v1.1 MD17G1102500.v1.1
prunus_persica	Prupe.3G212300_v2.0.a1 Prupe.3G212300_v2.0.a1 Prupe.3G212300_v2.0.a1 Prupe.3G212300_v2.0.a1 Prupe.4G015400_v2.0.a1
pyrus_communis	pycom05g31920 pycom10g27630 pycom17g09690
rosa_chinensis	RchiOBHm_Chr2g0158431 RchiOBHm_Chr5g0002141
rosa_laevigata	RLG00000021087 RLG00000026695 RLG00000031000
rosa_multiflora	Rmu_sc0004855.1_g000006 Rmu_ssc0000001.1_g000006
rosa_roxburghii	Rroxscaffold_1G00024330 Rroxscaffold_1G00073770 Rroxscaffold_2G00091380
rosa_rugosa	Rorug02G0468700 Rorug02G0468800 Rorug02G0468900 Rorug04G0394600
rosa_samantha	Rh2AG534800 Rh2BG548200 Rh2CG518600 Rh2DG557800 Rh5AG016400 Rh5BG019900 Rh5CG017700 Rh5CG364100 Rh5CG364200 Rh5DG017900
rosa_wichuraiana	Rw2G044290 Rw5G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	53
AccII	CGCG	2 cut(s)	132, 408
AccIII	TCCGGA	1 cut(s)	445
AciI	CCGC	3 cut(s)	149, 157, 406
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	2 cut(s)	301, 374
AfiI	CCNNNNNNNGG	2 cut(s)	213, 390
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	3 cut(s)	316, 518, 589
AjnI	CCWGG	2 cut(s)	16, 30
AluBI	AGCT	2 cut(s)	244, 331
AluI	AGCT	2 cut(s)	244, 331
Alw21I	GWGCWC	3 cut(s)	280, 309, 540
Alw44I	GTGCAC	2 cut(s)	276, 305
Aor13HI	TCCGGA	1 cut(s)	445
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	2 cut(s)	276, 305
Asp700I	GAANNNNTTC	1 cut(s)	593
AspLEI	GCGC	1 cut(s)	639
AspS9I	GGNCC	2 cut(s)	28, 151
AsuHPI	GGTGA	2 cut(s)	89, 597
AsuII	TTCGAA	1 cut(s)	70
AvaII	GGWCC	2 cut(s)	28, 151
AxyI	CCTNAGG	1 cut(s)	198
BaeGI	GKGCMC	3 cut(s)	56, 280, 309
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	226
Bbv12I	GWGCWC	3 cut(s)	280, 309, 540
BccI	CCATC	5 cut(s)	53, 106, 177, 215, 616
BciT130I	CCWGG	2 cut(s)	18, 32
BfmI	CTRYAG	2 cut(s)	285, 361
BglII	AGATCT	1 cut(s)	581
Bme1390I	CCNGG	2 cut(s)	18, 32
Bme18I	GGWCC	2 cut(s)	28, 151
BmgT120I	GGNCC	2 cut(s)	28, 151
BmiI	GGNNCC	4 cut(s)	55, 235, 346, 630
BmrFI	CCNGG	2 cut(s)	18, 32
BmrI	ACTGGG	1 cut(s)	593
BmsI	GCATC	4 cut(s)	423, 464, 511, 562
BmuI	ACTGGG	1 cut(s)	593
BpiI	GAAGAC	1 cut(s)	226
BpmI	CTGGAG	1 cut(s)	408
Bpu10I	CCTNAGC	1 cut(s)	621
Bpu14I	TTCGAA	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	353
BsaJI	CCNNGG	3 cut(s)	229, 237, 348
BsaWI	WCCGGW	1 cut(s)	445
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 390
Bse1I	ACTGG	4 cut(s)	79, 391, 488, 599
Bse21I	CCTNAGG	1 cut(s)	198
BseAI	TCCGGA	1 cut(s)	445
BseBI	CCWGG	2 cut(s)	18, 32
BseDI	CCNNGG	3 cut(s)	229, 237, 348
BseGI	GGATG	3 cut(s)	454, 479, 490
BseLI	CCNNNNNNNGG	2 cut(s)	213, 390
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	4 cut(s)	79, 391, 488, 599
BseRI	GAGGAG	1 cut(s)	215
BseSI	GKGCMC	3 cut(s)	56, 280, 309
BsgI	GTGCAG	2 cut(s)	290, 482
Bsh1236I	CGCG	2 cut(s)	132, 408
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	53
BsiHKAI	GWGCWC	3 cut(s)	280, 309, 540
BsiSI	CCGG	1 cut(s)	446
BslI	CCNNNNNNNGG	2 cut(s)	213, 390
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	70
Bsp1286I	GDGCHC	4 cut(s)	56, 280, 309, 540
Bsp13I	TCCGGA	1 cut(s)	445
Bsp143I	GATC	2 cut(s)	141, 581
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	3 cut(s)	149, 157, 406
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	190
BspEI	TCCGGA	1 cut(s)	445
BspFNI	CGCG	2 cut(s)	132, 408
BspLI	GGNNCC	4 cut(s)	55, 235, 346, 630
BspT104I	TTCGAA	1 cut(s)	70
BspT107I	GGYRCC	1 cut(s)	53
BsrI	ACTGG	4 cut(s)	79, 391, 488, 599
BssECI	CCNNGG	3 cut(s)	229, 237, 348
BssMI	GATC	2 cut(s)	141, 581
BssT1I	CCWWGG	2 cut(s)	229, 237
Bst2UI	CCWGG	2 cut(s)	18, 32
Bst4CI	ACNGT	2 cut(s)	225, 304
Bst6I	CTCTTC	1 cut(s)	638
BstBI	TTCGAA	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	3 cut(s)	198, 327, 621
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	3 cut(s)	454, 479, 490
BstFNI	CGCG	2 cut(s)	132, 408
BstHHI	GCGC	1 cut(s)	639
BstKTI	GATC	2 cut(s)	144, 584
BstMBI	GATC	2 cut(s)	141, 581
BstNI	CCWGG	2 cut(s)	18, 32
BstSCI	CCNGG	2 cut(s)	16, 30
BstSFI	CTRYAG	2 cut(s)	285, 361
BstSLI	GKGCMC	3 cut(s)	56, 280, 309
BstUI	CGCG	2 cut(s)	132, 408
BstV2I	GAAGAC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	581
BstYI	RGATCY	1 cut(s)	581
Bsu36I	CCTNAGG	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	3 cut(s)	454, 479, 490
BtsI	GCAGTG	1 cut(s)	470
BtsIMutI	CAGTG	2 cut(s)	384, 470
Cac8I	GCNNGC	1 cut(s)	130
CfoI	GCGC	1 cut(s)	639
Cfr13I	GGNCC	2 cut(s)	28, 151
Csp6I	GTAC	2 cut(s)	300, 373
CviAII	CATG	1 cut(s)	230
CviQI	GTAC	2 cut(s)	300, 373
DdeI	CTNAG	3 cut(s)	198, 327, 621
DpnI	GATC	2 cut(s)	143, 583
DpnII	GATC	2 cut(s)	141, 581
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	638
EarI	CTCTTC	1 cut(s)	638
Eco130I	CCWWGG	2 cut(s)	229, 237
Eco47I	GGWCC	2 cut(s)	28, 151
Eco81I	CCTNAGG	1 cut(s)	198
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	16, 30
EcoT14I	CCWWGG	2 cut(s)	229, 237
ErhI	CCWWGG	2 cut(s)	229, 237
FaeI	CATG	1 cut(s)	233
FaiI	YATR	9 cut(s)	121, 123, 231, 264, 287, 439, 458, 503, 509
FatI	CATG	1 cut(s)	229
FauNDI	CATATG	1 cut(s)	121
FokI	GGATG	3 cut(s)	461, 477, 486
GlaI	GCGC	1 cut(s)	638
GsuI	CTGGAG	1 cut(s)	408
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	446
HhaI	GCGC	1 cut(s)	639
Hin1II	CATG	1 cut(s)	233
Hin6I	GCGC	1 cut(s)	637
HinP1I	GCGC	1 cut(s)	637
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	3 cut(s)	35, 104, 203
HpaII	CCGG	1 cut(s)	446
HphI	GGTGA	2 cut(s)	89, 597
Hpy166II	GTNNAC	4 cut(s)	278, 300, 307, 396
Hpy188I	TCNGA	6 cut(s)	103, 109, 212, 256, 553, 565
Hpy188III	TCNNGA	2 cut(s)	316, 446
Hpy8I	GTNNAC	4 cut(s)	278, 300, 307, 396
HpyAV	CCTTC	3 cut(s)	163, 284, 322
HpyCH4III	ACNGT	2 cut(s)	225, 304
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	6 cut(s)	271, 278, 307, 463, 477, 524
HpyF3I	CTNAG	3 cut(s)	198, 327, 621
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	1 cut(s)	233
HspAI	GCGC	1 cut(s)	637
Kpn2I	TCCGGA	1 cut(s)	445
Kzo9I	GATC	2 cut(s)	141, 581
LmnI	GCTCC	5 cut(s)	233, 241, 344, 535, 628
LweI	GCATC	4 cut(s)	423, 464, 511, 562
MaeII	ACGT	1 cut(s)	165
MalI	GATC	2 cut(s)	143, 583
MboI	GATC	2 cut(s)	141, 581
MboII	GAAGA	3 cut(s)	151, 231, 530
MflI	RGATCY	1 cut(s)	581
MhlI	GDGCHC	4 cut(s)	56, 280, 309, 540
MlsI	TGGCCA	1 cut(s)	5
MluI	ACGCGT	1 cut(s)	130
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	29, 98, 212
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	9 cut(s)	126, 193, 206, 343, 383, 463, 505, 610, 639
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	445
MroXI	GAANNNNTTC	1 cut(s)	593
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	264
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	446
MspR9I	CCNGG	2 cut(s)	18, 32
MvaI	CCWGG	2 cut(s)	18, 32
MvnI	CGCG	2 cut(s)	132, 408
NcoI	CCATGG	1 cut(s)	229
NdeI	CATATG	1 cut(s)	121
NdeII	GATC	2 cut(s)	141, 581
NlaIII	CATG	1 cut(s)	233
NlaIV	GGNNCC	4 cut(s)	55, 235, 346, 630
NmeAIII	GCCGAG	1 cut(s)	373
NspV	TTCGAA	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	593
PleI	GAGTC	3 cut(s)	29, 98, 211
PpsI	GAGTC	3 cut(s)	29, 98, 211
PpuMI	RGGWCCY	1 cut(s)	28
Psp5II	RGGWCCY	1 cut(s)	28
Psp6I	CCWGG	2 cut(s)	16, 30
PspGI	CCWGG	2 cut(s)	16, 30
PspN4I	GGNNCC	4 cut(s)	55, 235, 346, 630
PspPI	GGNCC	2 cut(s)	28, 151
PspPPI	RGGWCCY	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	581
RsaI	GTAC	2 cut(s)	301, 374
RsaNI	GTAC	2 cut(s)	300, 373
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	89
Sau3AI	GATC	2 cut(s)	141, 581
Sau96I	GGNCC	2 cut(s)	28, 151
SchI	GAGTC	3 cut(s)	29, 98, 212
ScrFI	CCNGG	2 cut(s)	18, 32
SduI	GDGCHC	4 cut(s)	56, 280, 309, 540
SfaNI	GCATC	4 cut(s)	423, 464, 511, 562
SfcI	CTRYAG	2 cut(s)	285, 361
SfuI	TTCGAA	1 cut(s)	70
SinI	GGWCC	2 cut(s)	28, 151
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
SsiI	CCGC	3 cut(s)	149, 157, 406
StyD4I	CCNGG	2 cut(s)	16, 30
StyI	CCWWGG	2 cut(s)	229, 237
TaaI	ACNGT	2 cut(s)	225, 304
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	4 cut(s)	70, 144, 181, 193
TatI	WGTACW	1 cut(s)	372
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	2 cut(s)	391, 470
TspDTI	ATGAA	1 cut(s)	479
TspRI	CASTG	2 cut(s)	391, 470
VneI	GTGCAC	2 cut(s)	276, 305
VpaK11BI	GGWCC	2 cut(s)	28, 151
XmnI	GAANNNNTTC	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.