Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001869

Physical Location & Seq

Genomic Coordinates Reverse (-)

59955848 .. 59958464

Gene Structure 2617 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0468700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGAAAAGAGAGAAGTCATAGGAGACTTCGCCGGAGTCCGGCCAACAATCGCTGTATTTCTCTGCCGCCAGAATCCGGTCACTTGCTGCCGCCCACCGGACTTCTTTGAAAACCTCGTCGGAGGTCCCTACAGAGGTCATCTGAGATCTCGTAGGAACTTTCCGGTGCAGCCAGAGAAGCTTATTAATGTCAAACACTTAGAGAAGCAACTAAACTACTCATTTCGTGATCCTTCTCTTCTAGTGGAAGCACTAACTCATGGTTCTTACATGCTCCCTGAGATCCCAGGATGTTATCAGCGGTTAGAATTTCTTGGGGACGCAGTTTTAGATTACCTGATCACTAGTTATCTGTACAACAAATATCCTGGGATGTCGCCAGGAGTCTTAACTAATATGAGGTCTGCTTCGGTACTAGGAGATATTATAGAGTCTCTTGGAGGGGCAATTTTTGTTGATTCCGGATACGATAAGAATGTTGTATTTCAGAGTATACGTCCTCTGTTAGAGCCCTTGATTACTCCAGAAATGATAACTCTCCATCCTGATAGAGAGCTAAATGAACTTTGTTCAAAAATGCATTATGACAGGAAGAAATCAAAATCATTCGAAAATGATATGGCTACCATTACTATTGAGGTTGAAGCTAATGGCGTCACATACAAGCATACATCAACAGCTCCTGATAAGTGGATGGCAAGTAAATTAGCAAGCAAAGAAGTTTTGAGGTCCTTGAAAGAGAGTGCTCATTTATCAAAAGATGCTCTCCCATCTTCAAACAACGCCTTCACCACTCCACAACTCGTTTCCTTCACCAAGTTGACTCAGGAAATGGTTCTAGCAGCAGCAGCAGCAGCTCCCCCAACAGGAAGTGCCGCAGCTGCTGCAAGCATGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032991 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH PHD

Protein Analysis

299

Amino Acids

33.16

Weight (kDa)

7.65

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonucleas_3_3	PF14622	77 - 134	8.2e-10	Ribonuclease-III-like
Ribonuclease_3	PF00636	100 - 138	2.5e-10	Ribonuclease III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04260 AT4G22140 AT4G22140 AT4G22140
fragaria_vesca	FvH4_3g01411 FvH4_6g42580
malus_domestica	MD05G1352300.v1.1 MD09G1112400.v1.1 MD10G1326300.v1.1 MD11G1102600.v1.1 MD11G1102700.v1.1 MD17G1102500.v1.1
prunus_persica	Prupe.3G212300_v2.0.a1 Prupe.3G212300_v2.0.a1 Prupe.3G212300_v2.0.a1 Prupe.3G212300_v2.0.a1 Prupe.4G015400_v2.0.a1
pyrus_communis	pycom05g31920 pycom10g27630 pycom17g09690
rosa_chinensis	RchiOBHm_Chr2g0158431 RchiOBHm_Chr5g0002141
rosa_laevigata	RLG00000021087 RLG00000026695 RLG00000031000
rosa_multiflora	Rmu_sc0004855.1_g000006 Rmu_ssc0000001.1_g000006
rosa_roxburghii	Rroxscaffold_1G00024330 Rroxscaffold_1G00073770 Rroxscaffold_2G00091380
rosa_rugosa	Rorug02G0468700 Rorug02G0468800 Rorug02G0468900 Rorug04G0394600
rosa_samantha	Rh2AG534800 Rh2BG548200 Rh2CG518600 Rh2DG557800 Rh5AG016400 Rh5BG019900 Rh5CG017700 Rh5CG364100 Rh5CG364200 Rh5DG017900
rosa_wichuraiana	Rw2G044290 Rw5G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	493
AccIII	TCCGGA	1 cut(s)	461
AciI	CCGC	4 cut(s)	67, 91, 301, 876
AclWI	GGATC	2 cut(s)	224, 277
AcoI	YGGCCR	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	308
AcyI	GRCGYC	1 cut(s)	654
AfaI	GTAC	2 cut(s)	356, 414
AfiI	CCNNNNNNNGG	5 cut(s)	39, 76, 97, 134, 866
AgsI	TTSAA	5 cut(s)	110, 573, 644, 736, 777
AhlI	ACTAGT	1 cut(s)	344
AjnI	CCWGG	3 cut(s)	286, 367, 379
AluBI	AGCT	6 cut(s)	181, 556, 647, 680, 857, 881
AluI	AGCT	6 cut(s)	181, 556, 647, 680, 857, 881
Alw21I	GWGCWC	1 cut(s)	748
Alw26I	GTCTC	2 cut(s)	18, 438
AlwI	GGATC	2 cut(s)	224, 277
AlwNI	CAGNNNCTG	2 cut(s)	683, 884
Aor13HI	TCCGGA	1 cut(s)	461
AoxI	GGCC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	308
AseI	ATTAAT	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	834
AspLEI	GCGC	1 cut(s)	897
AspS9I	GGNCC	2 cut(s)	125, 729
AsuHPI	GGTGA	2 cut(s)	781, 805
AsuII	TTCGAA	1 cut(s)	609
AvaII	GGWCC	2 cut(s)	125, 729
BanII	GRGCYC	1 cut(s)	513
Bbv12I	GWGCWC	1 cut(s)	748
BccI	CCATC	3 cut(s)	549, 688, 778
BciT130I	CCWGG	3 cut(s)	288, 369, 381
BciVI	GTATCC	1 cut(s)	458
BclI	TGATCA	1 cut(s)	339
BcoDI	GTCTC	2 cut(s)	18, 438
BcuI	ACTAGT	1 cut(s)	344
BfaI	CTAG	4 cut(s)	242, 345, 416, 839
BfmI	CTRYAG	1 cut(s)	130
BfuI	GTATCC	1 cut(s)	458
BglII	AGATCT	1 cut(s)	146
Bme1390I	CCNGG	3 cut(s)	288, 369, 381
Bme18I	GGWCC	2 cut(s)	125, 729
BmgT120I	GGNCC	2 cut(s)	125, 729
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	3 cut(s)	288, 369, 381
BmsI	GCATC	1 cut(s)	751
BpmI	CTGGAG	1 cut(s)	507
Bpu14I	TTCGAA	1 cut(s)	609
BsaHI	GRCGYC	1 cut(s)	654
BsaJI	CCNNGG	2 cut(s)	286, 368
BsaWI	WCCGGW	4 cut(s)	76, 97, 163, 461
Bsc4I	CCNNNNNNNGG	5 cut(s)	39, 76, 97, 134, 866
BseAI	TCCGGA	1 cut(s)	461
BseBI	CCWGG	3 cut(s)	288, 369, 381
BseDI	CCNNGG	2 cut(s)	286, 368
BseGI	GGATG	4 cut(s)	296, 378, 541, 699
BseLI	CCNNNNNNNGG	5 cut(s)	39, 76, 97, 134, 866
BseMII	CTCAG	3 cut(s)	134, 270, 839
BsgI	GTGCAG	1 cut(s)	188
BshFI	GGCC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	748
BsiSI	CCGG	6 cut(s)	33, 40, 77, 98, 164, 462
BslFI	GGGAC	2 cut(s)	111, 332
BslI	CCNNNNNNNGG	5 cut(s)	39, 76, 97, 134, 866
BsmAI	GTCTC	2 cut(s)	18, 438
BsmFI	GGGAC	2 cut(s)	111, 332
BsnI	GGCC	1 cut(s)	43
Bsp119I	TTCGAA	1 cut(s)	609
Bsp1286I	GDGCHC	2 cut(s)	513, 748
Bsp13I	TCCGGA	1 cut(s)	461
Bsp1407I	TGTACA	1 cut(s)	354
Bsp143I	GATC	4 cut(s)	146, 229, 282, 339
BspACI	CCGC	4 cut(s)	67, 91, 301, 876
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	3 cut(s)	135, 271, 838
BspEI	TCCGGA	1 cut(s)	461
BspLI	GGNNCC	1 cut(s)	127
BspPI	GGATC	2 cut(s)	224, 277
BspT104I	TTCGAA	1 cut(s)	609
BsrGI	TGTACA	1 cut(s)	354
BssECI	CCNNGG	2 cut(s)	286, 368
BssMI	GATC	4 cut(s)	146, 229, 282, 339
BssNAI	GTATAC	1 cut(s)	494
BssNI	GRCGYC	1 cut(s)	654
Bst1107I	GTATAC	1 cut(s)	494
Bst2UI	CCWGG	3 cut(s)	288, 369, 381
Bst6I	CTCTTC	1 cut(s)	243
BstACI	GRCGYC	1 cut(s)	654
BstAPI	GCANNNNNTGC	1 cut(s)	884
BstAUI	TGTACA	1 cut(s)	354
BstBI	TTCGAA	1 cut(s)	609
BstC8I	GCNNGC	3 cut(s)	712, 889, 893
BstDEI	CTNAG	4 cut(s)	143, 199, 279, 825
BstF5I	GGATG	4 cut(s)	296, 378, 541, 699
BstHHI	GCGC	1 cut(s)	897
BstKTI	GATC	4 cut(s)	149, 232, 285, 342
BstMAI	GTCTC	2 cut(s)	18, 438
BstMBI	GATC	4 cut(s)	146, 229, 282, 339
BstMWI	GCNNNNNNNGC	6 cut(s)	178, 848, 851, 854, 881, 884
BstNI	CCWGG	3 cut(s)	288, 369, 381
BstNSI	RCATGY	2 cut(s)	274, 895
BstSCI	CCNGG	3 cut(s)	286, 367, 379
BstSFI	CTRYAG	1 cut(s)	130
BstX2I	RGATCY	2 cut(s)	146, 282
BstYI	RGATCY	2 cut(s)	146, 282
BstZ17I	GTATAC	1 cut(s)	494
BsuI	GTATCC	1 cut(s)	458
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	4 cut(s)	296, 378, 541, 699
Cac8I	GCNNGC	3 cut(s)	712, 889, 893
CaiI	CAGNNNCTG	2 cut(s)	683, 884
CfoI	GCGC	1 cut(s)	897
Cfr13I	GGNCC	2 cut(s)	125, 729
CseI	GACGC	2 cut(s)	329, 643
Csp6I	GTAC	2 cut(s)	355, 413
CviAII	CATG	3 cut(s)	260, 271, 892
CviQI	GTAC	2 cut(s)	355, 413
DdeI	CTNAG	4 cut(s)	143, 199, 279, 825
DpnI	GATC	4 cut(s)	148, 231, 284, 341
DpnII	GATC	4 cut(s)	146, 229, 282, 339
EaeI	YGGCCR	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	513
Eco47I	GGWCC	2 cut(s)	125, 729
EcoO109I	RGGNCCY	2 cut(s)	125, 729
EcoRII	CCWGG	3 cut(s)	286, 367, 379
EcoT22I	ATGCAT	1 cut(s)	582
EcoT38I	GRGCYC	1 cut(s)	513
FaeI	CATG	3 cut(s)	263, 274, 895
FaqI	GGGAC	2 cut(s)	111, 332
FatI	CATG	3 cut(s)	259, 270, 891
FbaI	TGATCA	1 cut(s)	339
FblI	GTMKAC	1 cut(s)	493
FokI	GGATG	4 cut(s)	303, 385, 528, 706
FriOI	GRGCYC	1 cut(s)	513
FspBI	CTAG	4 cut(s)	242, 345, 416, 839
GlaI	GCGC	1 cut(s)	896
GsuI	CTGGAG	1 cut(s)	507
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	6 cut(s)	33, 40, 77, 98, 164, 462
HgaI	GACGC	2 cut(s)	329, 643
HhaI	GCGC	1 cut(s)	897
Hin1I	GRCGYC	1 cut(s)	654
Hin1II	CATG	3 cut(s)	263, 274, 895
Hin6I	GCGC	1 cut(s)	895
HinP1I	GCGC	1 cut(s)	895
HincII	GTYRAC	1 cut(s)	822
HindII	GTYRAC	1 cut(s)	822
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	6 cut(s)	36, 73, 384, 431, 458, 823
HpaII	CCGG	6 cut(s)	33, 40, 77, 98, 164, 462
HphI	GGTGA	2 cut(s)	781, 805
Hpy166II	GTNNAC	2 cut(s)	494, 822
Hpy188I	TCNGA	3 cut(s)	122, 144, 489
Hpy188III	TCNNGA	6 cut(s)	227, 462, 524, 545, 683, 827
Hpy8I	GTNNAC	2 cut(s)	494, 822
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	3 cut(s)	243, 796, 820
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	3 cut(s)	169, 580, 887
HpyF10VI	GCNNNNNNNGC	6 cut(s)	178, 848, 851, 854, 881, 884
HpyF3I	CTNAG	4 cut(s)	143, 199, 279, 825
HpySE526I	ACGT	1 cut(s)	496
Hsp92I	GRCGYC	1 cut(s)	654
Hsp92II	CATG	3 cut(s)	263, 274, 895
HspAI	GCGC	1 cut(s)	895
Kpn2I	TCCGGA	1 cut(s)	461
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	4 cut(s)	146, 229, 282, 339
LmnI	GCTCC	3 cut(s)	279, 685, 862
LweI	GCATC	1 cut(s)	751
MaeI	CTAG	4 cut(s)	242, 345, 416, 839
MaeII	ACGT	1 cut(s)	496
MaeIII	GTNAC	2 cut(s)	79, 655
MalI	GATC	4 cut(s)	148, 231, 284, 341
MboI	GATC	4 cut(s)	146, 229, 282, 339
MboII	GAAGA	3 cut(s)	230, 604, 765
MflI	RGATCY	2 cut(s)	146, 282
MhlI	GDGCHC	2 cut(s)	513, 748
MluCI	AATT	3 cut(s)	308, 447, 704
MlyI	GAGTC	4 cut(s)	45, 393, 440, 817
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	8 cut(s)	116, 125, 128, 393, 434, 510, 631, 720
Mph1103I	ATGCAT	1 cut(s)	582
MroI	TCCGGA	1 cut(s)	461
MroXI	GAANNNNTTC	1 cut(s)	834
MseI	TTAA	2 cut(s)	186, 389
MspA1I	CMGCKG	2 cut(s)	301, 881
MspI	CCGG	6 cut(s)	33, 40, 77, 98, 164, 462
MspR9I	CCNGG	3 cut(s)	288, 369, 381
MvaI	CCWGG	3 cut(s)	288, 369, 381
MwoI	GCNNNNNNNGC	6 cut(s)	178, 848, 851, 854, 881, 884
NdeII	GATC	4 cut(s)	146, 229, 282, 339
NlaIII	CATG	3 cut(s)	263, 274, 895
NlaIV	GGNNCC	1 cut(s)	127
NmuCI	GTSAC	2 cut(s)	79, 655
NsiI	ATGCAT	1 cut(s)	582
NspI	RCATGY	2 cut(s)	274, 895
NspV	TTCGAA	1 cut(s)	609
PaeI	GCATGC	1 cut(s)	895
PdmI	GAANNNNTTC	1 cut(s)	834
PfeI	GAWTC	2 cut(s)	73, 458
PleI	GAGTC	4 cut(s)	44, 392, 439, 817
PpsI	GAGTC	4 cut(s)	44, 392, 439, 817
PpuMI	RGGWCCY	2 cut(s)	125, 729
PshBI	ATTAAT	1 cut(s)	186
Psp5II	RGGWCCY	2 cut(s)	125, 729
Psp6I	CCWGG	3 cut(s)	286, 367, 379
PspGI	CCWGG	3 cut(s)	286, 367, 379
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	2 cut(s)	125, 729
PspPPI	RGGWCCY	2 cut(s)	125, 729
PstNI	CAGNNNCTG	2 cut(s)	683, 884
PsuI	RGATCY	2 cut(s)	146, 282
PvuII	CAGCTG	1 cut(s)	881
RsaI	GTAC	2 cut(s)	356, 414
RsaNI	GTAC	2 cut(s)	355, 413
SaqAI	TTAA	2 cut(s)	186, 389
Sau3AI	GATC	4 cut(s)	146, 229, 282, 339
Sau96I	GGNCC	2 cut(s)	125, 729
SchI	GAGTC	4 cut(s)	45, 393, 440, 817
ScrFI	CCNGG	3 cut(s)	288, 369, 381
SduI	GDGCHC	2 cut(s)	513, 748
SfaNI	GCATC	1 cut(s)	751
SfcI	CTRYAG	1 cut(s)	130
SfuI	TTCGAA	1 cut(s)	609
SinI	GGWCC	2 cut(s)	125, 729
SpeI	ACTAGT	1 cut(s)	344
SphI	GCATGC	1 cut(s)	895
Sse9I	AATT	3 cut(s)	308, 447, 704
SsiI	CCGC	4 cut(s)	67, 91, 301, 876
SspMI	CTAG	4 cut(s)	242, 345, 416, 839
StyD4I	CCNGG	3 cut(s)	286, 367, 379
TaiI	ACGT	1 cut(s)	499
TaqI	TCGA	1 cut(s)	609
TasI	AATT	3 cut(s)	308, 447, 704
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	3 cut(s)	69, 93, 878
TfiI	GAWTC	2 cut(s)	73, 458
Tru1I	TTAA	2 cut(s)	186, 389
Tru9I	TTAA	2 cut(s)	186, 389
TseFI	GTSAC	2 cut(s)	79, 655
Tsp45I	GTSAC	2 cut(s)	79, 655
TspDTI	ATGAA	1 cut(s)	576
VpaK11BI	GGWCC	2 cut(s)	125, 729
VspI	ATTAAT	1 cut(s)	186
XapI	RAATTY	1 cut(s)	308
XceI	RCATGY	2 cut(s)	274, 895
XmiI	GTMKAC	1 cut(s)	493
XmnI	GAANNNNTTC	1 cut(s)	834
XspI	CTAG	4 cut(s)	242, 345, 416, 839
Zsp2I	ATGCAT	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.