Rh5AG016400

BAH and coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001869
Physical Location & Seq
Forward (+)
1184442 .. 1186891
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG016400.1

Sequence Viewer

Length: 651 bp
ATGGCCAAAACCAGACCCGGAAAAAAAGACGTCGACTCCTACACTATCAGAGGCACCAACAAGGTCGTCAGAGCTGGGGATTGTGTGCTGATGCAGCCGTCGGATGCGGGGAAGCCGCAATACGTGGCGCGAATCGAGAAGATTGAGACTGACAGCAAGAGCAATGCTAAGGTGAGAGTGAGGTGGTACTATAGGCCTGAGGAGTCTATTGGAGGGCGCAGGCAGTTCCATGGATCCAAAGAGCTCTTCTTGTCTGACCACTATGATGTTCAGAGTGCGAACACCATTGAGGGCAAGTGTGTGGTTCACTCGTTTAAGAATTACACGAAGCTCGAAAATGTGGGAGCTGAGGACTACTACTGTAGGTTTGAGTACAAGGCTGCTACTGGGGCTTTTGCTCCTGATAGAGTTGCTGTGTATTGCAAGTGTGAGATGCCCTATAACCCGGATGACCTCATGGTGCAGTGTGAGGAGTGCAAAGACTGGTTTCATCCAGCATGTGTGAACATCTCCAATGAGGTAGCCAAAAAATTGGAGCACTATATATGTTCCGAATGTTCAGCTGACGAGGATGTGAAAAAACCTCAGAACTCAGTTTCAGCATCACTTGCAGATGATGTCAAGGTGGACCCTAAGCGCCGAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

216

Amino Acids

24.6

Weight (kDa)

8.24

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 23 - 134 1.3e-25 BAH domain
PHD_5 PF20826 139 - 186 8.5e-06 PhD finger domain
PHD PF00628 141 - 186 5.4e-09 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 33
AccB1I GGYRCC 1 cut(s) 53
AccI GTMKAC 1 cut(s) 33
AccII CGCG 1 cut(s) 130
AciI CCGC 2 cut(s) 107, 116
AclWI GGATC 2 cut(s) 228, 241
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 2 cut(s) 188, 374
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
AluBI AGCT 5 cut(s) 74, 244, 331, 347, 563
AluI AGCT 5 cut(s) 74, 244, 331, 347, 563
Alw21I GWGCWC 2 cut(s) 246, 540
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 2 cut(s) 228, 241
AoxI GGCC 2 cut(s) 3, 194
ApeKI GCWGC 2 cut(s) 94, 380
AspLEI GCGC 3 cut(s) 130, 219, 639
AspS9I GGNCC 1 cut(s) 628
AsuC2I CCSGG 2 cut(s) 18, 446
AsuHPI GGTGA 1 cut(s) 184
AvaII GGWCC 1 cut(s) 628
AxyI CCTNAGG 1 cut(s) 198
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 233
BanI GGYRCC 1 cut(s) 53
BanII GRGCYC 1 cut(s) 246
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
Bbv12I GWGCWC 2 cut(s) 246, 540
BbvCI CCTCAGC 1 cut(s) 348
BbvI GCAGC 2 cut(s) 106, 367
BceAI ACGGC 1 cut(s) 82
BcnI CCSGG 2 cut(s) 18, 446
BcoDI GTCTC 1 cut(s) 140
BfmI CTRYAG 2 cut(s) 190, 361
BfoI RGCGCY 1 cut(s) 640
BisI GCNGC 3 cut(s) 95, 116, 381
BlsI GCNGC 3 cut(s) 96, 117, 382
Bme1390I CCNGG 2 cut(s) 18, 446
Bme18I GGWCC 1 cut(s) 628
BmgT120I GGNCC 1 cut(s) 628
BmiI GGNNCC 3 cut(s) 55, 235, 630
BmrFI CCNGG 2 cut(s) 18, 446
BmrI ACTGGG 1 cut(s) 396
BmsI GCATC 4 cut(s) 81, 94, 423, 611
BmuI ACTGGG 1 cut(s) 396
Bpu10I CCTNAGC 3 cut(s) 168, 348, 633
BpuMI CCSGG 2 cut(s) 18, 446
BsaAI YACGTR 1 cut(s) 124
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 229
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bse1I ACTGG 2 cut(s) 391, 488
Bse21I CCTNAGG 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 4 cut(s) 109, 454, 490, 577
BseMI GCAATG 1 cut(s) 169
BseMII CTCAG 4 cut(s) 189, 339, 599, 606
BseNI ACTGG 2 cut(s) 391, 488
BseRI GAGGAG 2 cut(s) 215, 485
BseXI GCAGC 2 cut(s) 106, 367
BseYI CCCAGC 1 cut(s) 74
BsgI GTGCAG 1 cut(s) 482
Bsh1236I CGCG 1 cut(s) 130
BshFI GGCC 2 cut(s) 5, 196
BshNI GGYRCC 1 cut(s) 53
BsiHKAI GWGCWC 2 cut(s) 246, 540
BsiSI CCGG 2 cut(s) 18, 446
BsmAI GTCTC 1 cut(s) 140
BsnI GGCC 2 cut(s) 5, 196
Bsp1286I GDGCHC 2 cut(s) 246, 540
Bsp143I GATC 1 cut(s) 233
Bsp19I CCATGG 1 cut(s) 229
BspACI CCGC 2 cut(s) 107, 116
BspANI GGCC 2 cut(s) 5, 196
BspCNI CTCAG 4 cut(s) 190, 340, 598, 605
BspFNI CGCG 1 cut(s) 130
BspLI GGNNCC 3 cut(s) 55, 235, 630
BspPI GGATC 2 cut(s) 228, 241
BspQI GCTCTTC 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 169
BsrI ACTGG 2 cut(s) 391, 488
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 1 cut(s) 233
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 1 cut(s) 251
BstACI GRCGYC 1 cut(s) 30
BstAPI GCANNNNNTGC 1 cut(s) 608
BstBAI YACGTR 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 221
BstDEI CTNAG 6 cut(s) 168, 198, 348, 585, 592, 633
BstDSI CCRYGG 1 cut(s) 229
BstF5I GGATG 4 cut(s) 109, 454, 490, 577
BstFNI CGCG 1 cut(s) 130
BstH2I RGCGCY 1 cut(s) 640
BstHHI GCGC 3 cut(s) 130, 219, 639
BstKTI GATC 1 cut(s) 236
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 1 cut(s) 233
BstMWI GCNNNNNNNGC 3 cut(s) 94, 389, 608
BstNSI RCATGY 1 cut(s) 501
BstSCI CCNGG 2 cut(s) 16, 444
BstSFI CTRYAG 2 cut(s) 190, 361
BstUI CGCG 1 cut(s) 130
BstV1I GCAGC 2 cut(s) 106, 367
BstX2I RGATCY 1 cut(s) 233
BstXI CCANNNNNNTGG 1 cut(s) 532
BstYI RGATCY 1 cut(s) 233
Bsu36I CCTNAGG 1 cut(s) 198
BsuRI GGCC 2 cut(s) 5, 196
BtgI CCRYGG 1 cut(s) 229
BtsCI GGATG 4 cut(s) 109, 454, 490, 577
BtsI GCAGTG 1 cut(s) 470
BtsIMutI CAGTG 1 cut(s) 470
Cac8I GCNNGC 1 cut(s) 221
CfoI GCGC 3 cut(s) 130, 219, 639
Cfr13I GGNCC 1 cut(s) 628
Csp6I GTAC 2 cut(s) 187, 373
CviAII CATG 3 cut(s) 230, 457, 498
CviQI GTAC 2 cut(s) 187, 373
DdeI CTNAG 6 cut(s) 168, 198, 348, 585, 592, 633
DpnI GATC 1 cut(s) 235
DpnII GATC 1 cut(s) 233
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Ecl136II GAGCTC 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 229
Eco147I AGGCCT 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 628
Eco53kI GAGCTC 1 cut(s) 244
Eco81I CCTNAGG 1 cut(s) 198
EcoICRI GAGCTC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 229
FaeI CATG 3 cut(s) 233, 460, 501
FaiI YATR 9 cut(s) 192, 231, 264, 441, 458, 499, 543, 545, 547
FatI CATG 3 cut(s) 229, 456, 497
FauI CCCGC 1 cut(s) 100
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 3 cut(s) 95, 116, 381
FokI GGATG 4 cut(s) 116, 461, 477, 584
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 3 cut(s) 95, 116, 381
GlaI GCGC 3 cut(s) 129, 218, 638
GluI GCNGC 3 cut(s) 95, 116, 381
GsaI CCCAGC 1 cut(s) 78
HaeII RGCGCY 1 cut(s) 640
HaeIII GGCC 2 cut(s) 5, 196
HapII CCGG 2 cut(s) 18, 446
HhaI GCGC 3 cut(s) 130, 219, 639
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 3 cut(s) 233, 460, 501
Hin6I GCGC 3 cut(s) 128, 217, 637
HinP1I GCGC 3 cut(s) 128, 217, 637
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HinfI GANTC 3 cut(s) 35, 132, 203
HpaII CCGG 2 cut(s) 18, 446
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 4 cut(s) 34, 307, 505, 628
Hpy188I TCNGA 7 cut(s) 50, 71, 103, 256, 273, 553, 588
Hpy188III TCNNGA 2 cut(s) 136, 401
Hpy8I GTNNAC 4 cut(s) 34, 307, 505, 628
Hpy99I CGWCG 2 cut(s) 35, 103
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4IV ACGT 2 cut(s) 30, 123
HpyCH4V TGCA 5 cut(s) 94, 423, 463, 477, 611
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 389, 608
HpyF3I CTNAG 6 cut(s) 168, 198, 348, 585, 592, 633
HpySE526I ACGT 2 cut(s) 30, 123
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 3 cut(s) 233, 460, 501
HspAI GCGC 3 cut(s) 128, 217, 637
Kzo9I GATC 1 cut(s) 233
LguI GCTCTTC 1 cut(s) 251
LmnI GCTCC 3 cut(s) 344, 403, 535
Lsp1109I GCAGC 2 cut(s) 106, 367
LweI GCATC 4 cut(s) 81, 94, 423, 611
MaeII ACGT 2 cut(s) 30, 123
MalI GATC 1 cut(s) 235
MboI GATC 1 cut(s) 233
MboII GAAGA 2 cut(s) 151, 238
MflI RGATCY 1 cut(s) 233
MhlI GDGCHC 2 cut(s) 246, 540
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 319, 530
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 29, 212
MmeI TCCRAC 1 cut(s) 81
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 315
MslI CAYNNNNRTG 1 cut(s) 264
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 563
MspI CCGG 2 cut(s) 18, 446
MspR9I CCNGG 2 cut(s) 18, 446
MvnI CGCG 1 cut(s) 130
MwoI GCNNNNNNNGC 3 cut(s) 94, 389, 608
NciI CCSGG 2 cut(s) 18, 446
NcoI CCATGG 1 cut(s) 229
NdeII GATC 1 cut(s) 233
NlaIII CATG 3 cut(s) 233, 460, 501
NlaIV GGNNCC 3 cut(s) 55, 235, 630
NspI RCATGY 1 cut(s) 501
PceI AGGCCT 1 cut(s) 196
PciSI GCTCTTC 1 cut(s) 251
PfeI GAWTC 1 cut(s) 132
PkrI GCNGC 3 cut(s) 96, 117, 382
PleI GAGTC 2 cut(s) 29, 211
PpsI GAGTC 2 cut(s) 29, 211
Ppu21I YACGTR 1 cut(s) 124
Psp124BI GAGCTC 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 74
PspN4I GGNNCC 3 cut(s) 55, 235, 630
PspPI GGNCC 1 cut(s) 628
PsuI RGATCY 1 cut(s) 233
PvuII CAGCTG 1 cut(s) 563
RsaI GTAC 2 cut(s) 188, 374
RsaNI GTAC 2 cut(s) 187, 373
RseI CAYNNNNRTG 1 cut(s) 264
SacI GAGCTC 1 cut(s) 246
SalI GTCGAC 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 251
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 3 cut(s) 95, 116, 381
Sau3AI GATC 1 cut(s) 233
Sau96I GGNCC 1 cut(s) 628
SchI GAGTC 2 cut(s) 29, 212
ScrFI CCNGG 2 cut(s) 18, 446
SduI GDGCHC 2 cut(s) 246, 540
SfaNI GCATC 4 cut(s) 81, 94, 423, 611
SfcI CTRYAG 2 cut(s) 190, 361
SinI GGWCC 1 cut(s) 628
SmiMI CAYNNNNRTG 1 cut(s) 264
Sse9I AATT 2 cut(s) 319, 530
SseBI AGGCCT 1 cut(s) 196
SsiI CCGC 2 cut(s) 107, 116
SstI GAGCTC 1 cut(s) 246
StuI AGGCCT 1 cut(s) 196
StyD4I CCNGG 2 cut(s) 16, 444
StyI CCWWGG 1 cut(s) 229
TaaI ACNGT 1 cut(s) 362
TaiI ACGT 2 cut(s) 33, 126
TaqI TCGA 3 cut(s) 33, 135, 333
TasI AATT 2 cut(s) 319, 530
TatI WGTACW 1 cut(s) 372
TauI GCSGC 1 cut(s) 118
TfiI GAWTC 1 cut(s) 132
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 1 cut(s) 470
TseI GCWGC 2 cut(s) 94, 380
TspDTI ATGAA 1 cut(s) 479
TspRI CASTG 1 cut(s) 470
VpaK11BI GGWCC 1 cut(s) 628
XceI RCATGY 1 cut(s) 501
XmiI GTMKAC 1 cut(s) 33
ZraI GACGTC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.