Rh5CG364100

Bromo adjacent homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001869
Physical Location & Seq
Forward (+)
43858725 .. 43859287
563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG364100.1

Sequence Viewer

Length: 477 bp
ATGGGAAAGAGGAGAAAGCGTCTGAAACCTTTCACTATAAGCAGTCGAATTTCTGTCAAAGTTGGCGATGATGTTCTTGTTAGAAATAAAGAATCAAATACATTATGGGCGGCACACATCCTGCGTATGACCAAAATTAAAGACAGAATTTCGGTGGAGTTGAGGTGGTACTATCGCATAGAGGAAATCTTATCCCAAATCCCTAGTTTCATCGGACATAAGGAGCTTATCGTGTCTGATCATTATGGTTTTGTGGATGCTGAAACCATTAACGAAAAATGTAGGGTACACACTTTCTCCGGGTACCAAGGCATCAGTATCGATAAACTGGAAGAGAATGATTACTATTGGCGATTTGAGTATTCTCCTGCGTTACATAAGTTCAAGGAAGTTTCTGTTCCTGTGTATTGCGAGTGTCGGCTGCCTGAGAACTCAGATAAAATCATGGTGATGTGTTCCGACTACGAGAAGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

158

Amino Acids

18.82

Weight (kDa)

8.6

Isoelectric Point (pI)

51.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 18 - 131 6.3e-16 BAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 303
AccB1I GGYRCC 1 cut(s) 303
AciI CCGC 1 cut(s) 110
AcsI RAATTY 2 cut(s) 48, 147
AfaI GTAC 3 cut(s) 170, 288, 305
AgsI TTSAA 1 cut(s) 385
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
ApeKI GCWGC 1 cut(s) 421
ApoI RAATTY 2 cut(s) 48, 147
Asp700I GAANNNNTTC 1 cut(s) 29
Asp718I GGTACC 1 cut(s) 303
AsuC2I CCSGG 1 cut(s) 301
AsuHPI GGTGA 1 cut(s) 460
BanI GGYRCC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 408
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BclI TGATCA 1 cut(s) 238
BcnI CCSGG 1 cut(s) 301
BfaI CTAG 1 cut(s) 204
BisI GCNGC 2 cut(s) 111, 422
BlsI GCNGC 2 cut(s) 112, 423
Bme1390I CCNGG 1 cut(s) 301
BmiI GGNNCC 1 cut(s) 305
BmrFI CCNGG 1 cut(s) 301
BmsI GCATC 2 cut(s) 247, 321
BpuMI CCSGG 1 cut(s) 301
Bsa29I ATCGAT 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 307
BsaXI ACNNNNNCTCC 5 cut(s) 34, 149, 179, 281, 311
Bse1I ACTGG 1 cut(s) 333
BseCI ATCGAT 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 307
BseGI GGATG 2 cut(s) 117, 262
BseMII CTCAG 2 cut(s) 417, 447
BseNI ACTGG 1 cut(s) 333
BseRI GAGGAG 1 cut(s) 25
BseXI GCAGC 1 cut(s) 408
BshNI GGYRCC 1 cut(s) 303
BshVI ATCGAT 1 cut(s) 321
BsiSI CCGG 1 cut(s) 300
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 1 cut(s) 110
BspCNI CTCAG 2 cut(s) 418, 446
BspDI ATCGAT 1 cut(s) 321
BspLI GGNNCC 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 303
BsrI ACTGG 1 cut(s) 333
BssECI CCNNGG 1 cut(s) 307
BssMI GATC 1 cut(s) 238
BssT1I CCWWGG 1 cut(s) 307
Bst6I CTCTTC 1 cut(s) 327
BstDEI CTNAG 2 cut(s) 426, 433
BstF5I GGATG 2 cut(s) 117, 262
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 299
BstV1I GCAGC 1 cut(s) 408
Bsu15I ATCGAT 1 cut(s) 321
BsuTUI ATCGAT 1 cut(s) 321
BtgZI GCGATG 1 cut(s) 81
BtsCI GGATG 2 cut(s) 117, 262
ClaI ATCGAT 1 cut(s) 321
CseI GACGC 1 cut(s) 8
Csp6I GTAC 3 cut(s) 169, 287, 304
CviAII CATG 1 cut(s) 445
CviJI RGCY 2 cut(s) 226, 421
CviKI_1 RGCY 2 cut(s) 226, 421
CviQI GTAC 3 cut(s) 169, 287, 304
DdeI CTNAG 2 cut(s) 426, 433
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
Eco130I CCWWGG 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 307
FaeI CATG 1 cut(s) 448
FaiI YATR 8 cut(s) 38, 106, 128, 179, 219, 246, 378, 446
FatI CATG 1 cut(s) 444
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 2 cut(s) 111, 422
FokI GGATG 2 cut(s) 104, 269
Fsp4HI GCNGC 2 cut(s) 111, 422
FspBI CTAG 1 cut(s) 204
GluI GCNGC 2 cut(s) 111, 422
HapII CCGG 1 cut(s) 300
HgaI GACGC 1 cut(s) 8
Hin1II CATG 1 cut(s) 448
HinfI GANTC 1 cut(s) 92
HpaII CCGG 1 cut(s) 300
HphI GGTGA 1 cut(s) 460
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 5 cut(s) 24, 215, 238, 436, 460
Hpy8I GTNNAC 1 cut(s) 289
HpyF3I CTNAG 2 cut(s) 426, 433
Hsp92II CATG 1 cut(s) 448
KpnI GGTACC 1 cut(s) 307
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 1 cut(s) 238
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 6 cut(s) 134, 313, 314, 381, 414, 438
Lsp1109I GCAGC 1 cut(s) 408
LweI GCATC 2 cut(s) 247, 321
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 372
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 1 cut(s) 344
MluCI AATT 3 cut(s) 48, 135, 147
MnlI CCTC 3 cut(s) 3, 156, 175
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 2 cut(s) 138, 270
MslI CAYNNNNRTG 1 cut(s) 449
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 1 cut(s) 301
NciI CCSGG 1 cut(s) 301
NdeII GATC 1 cut(s) 238
NlaIII CATG 1 cut(s) 448
NlaIV GGNNCC 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 2 cut(s) 112, 423
PspN4I GGNNCC 1 cut(s) 305
RsaI GTAC 3 cut(s) 170, 288, 305
RsaNI GTAC 3 cut(s) 169, 287, 304
RseI CAYNNNNRTG 1 cut(s) 449
SaqAI TTAA 2 cut(s) 138, 270
SatI GCNGC 2 cut(s) 111, 422
Sau3AI GATC 1 cut(s) 238
ScrFI CCNGG 1 cut(s) 301
SetI ASST 3 cut(s) 31, 167, 228
SfaNI GCATC 2 cut(s) 247, 321
SmiMI CAYNNNNRTG 1 cut(s) 449
Sse9I AATT 3 cut(s) 48, 135, 147
SsiI CCGC 1 cut(s) 110
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 299
StyI CCWWGG 1 cut(s) 307
TaqI TCGA 2 cut(s) 46, 321
TasI AATT 3 cut(s) 48, 135, 147
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 2 cut(s) 138, 270
Tru9I TTAA 2 cut(s) 138, 270
TseI GCWGC 1 cut(s) 421
TspDTI ATGAA 1 cut(s) 199
XapI RAATTY 2 cut(s) 48, 147
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.