Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001869

Physical Location & Seq

Genomic Coordinates Reverse (-)

8710030 .. 8714165

Gene Structure 4136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1102500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCCAAGACCAAACCTGGAAAAAAGGACCTTGACTCTTACACCATCAAGGGCACCAACAAAATCGTTCGACCTGGTGATTGTGTGTTAATGCGGCCGTCAGACACTGATAAGCCTCCGTATGTGGCACGCGTGGAGAAGCTCGAAGCTGACCACCGCAACAATGTGAAGGTTCGGATTCGATGGTATTATCGGCCTGAGGAATCGATTGGAGGAAGGAGACAGTTCCATGGGGCCAAGGAGCTGTTTTTATCAGACCACTATGATGTGCAGAGTGCACATACTATCGAAGGGAAGTGTACAGTGCACTCCTTCAAGAACTACACTAAGCTTGAGAATGTGGGAGCTGAGGATTACTTCTGTAGGTTTGAGTACAAGGCTTCCACTGGAGGGTTCACACCAGACCGCGTGGCTGTGTATTGTAAATGTGAGATGCCATACAATCCGGACGACCTTATGGTGCAATGCGAGGGATGCAAGGACTGGTTTCATCCCTCGTGTATGGGTATGACAATTGAAGATGCAAAAAAGTTGGAGCACTTTTTATGTTCTGACTGCTCATCTGATGATGATGCCAAAAGATCCTTGAACACATTTCCAGTATCACCATCTGTTGAGGCTAAGGCCGAGCCAAAGCGCAGGAAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032991 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH PHD

Protein Analysis

217

Amino Acids

24.81

Weight (kDa)

8.45

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	23 - 134	1e-25	BAH domain
PHD	PF00628	141 - 186	6.2e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04260 AT4G22140 AT4G22140 AT4G22140
fragaria_vesca	FvH4_3g01411 FvH4_6g42580
malus_domestica	MD05G1352300.v1.1 MD09G1112400.v1.1 MD10G1326300.v1.1 MD11G1102600.v1.1 MD11G1102700.v1.1 MD17G1102500.v1.1
prunus_persica	Prupe.3G212300_v2.0.a1 Prupe.3G212300_v2.0.a1 Prupe.3G212300_v2.0.a1 Prupe.3G212300_v2.0.a1 Prupe.4G015400_v2.0.a1
pyrus_communis	pycom05g31920 pycom10g27630 pycom17g09690
rosa_chinensis	RchiOBHm_Chr2g0158431 RchiOBHm_Chr5g0002141
rosa_laevigata	RLG00000021087 RLG00000026695 RLG00000031000
rosa_multiflora	Rmu_sc0004855.1_g000006 Rmu_ssc0000001.1_g000006
rosa_roxburghii	Rroxscaffold_1G00024330 Rroxscaffold_1G00073770 Rroxscaffold_2G00091380
rosa_rugosa	Rorug02G0468700 Rorug02G0468800 Rorug02G0468900 Rorug04G0394600
rosa_samantha	Rh2AG534800 Rh2BG548200 Rh2CG518600 Rh2DG557800 Rh5AG016400 Rh5BG019900 Rh5CG017700 Rh5CG364100 Rh5CG364200 Rh5DG017900
rosa_wichuraiana	Rw2G044290 Rw5G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	53
AccII	CGCG	2 cut(s)	132, 408
AccIII	TCCGGA	1 cut(s)	445
AciI	CCGC	3 cut(s)	94, 157, 406
AclWI	GGATC	1 cut(s)	576
AcoI	YGGCCR	2 cut(s)	3, 95
AfaI	GTAC	2 cut(s)	301, 374
AfiI	CCNNNNNNNGG	1 cut(s)	390
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	3 cut(s)	316, 518, 589
AjnI	CCWGG	2 cut(s)	16, 73
AluBI	AGCT	5 cut(s)	142, 149, 244, 331, 347
AluI	AGCT	5 cut(s)	142, 149, 244, 331, 347
Alw21I	GWGCWC	3 cut(s)	280, 309, 540
Alw26I	GTCTC	1 cut(s)	214
Alw44I	GTGCAC	2 cut(s)	276, 305
AlwI	GGATC	1 cut(s)	576
AlwNI	CAGNNNCTG	1 cut(s)	107
Aor13HI	TCCGGA	1 cut(s)	445
AoxI	GGCC	5 cut(s)	3, 95, 194, 234, 624
ApaLI	GTGCAC	2 cut(s)	276, 305
AspLEI	GCGC	1 cut(s)	639
AspS9I	GGNCC	2 cut(s)	28, 234
AsuHPI	GGTGA	2 cut(s)	89, 597
AvaII	GGWCC	1 cut(s)	28
AxyI	CCTNAGG	1 cut(s)	198
BaeGI	GKGCMC	3 cut(s)	56, 280, 309
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	53
BauI	CACGAG	1 cut(s)	496
Bbv12I	GWGCWC	3 cut(s)	280, 309, 540
BbvCI	CCTCAGC	1 cut(s)	348
BccI	CCATC	3 cut(s)	53, 177, 616
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	2 cut(s)	18, 75
BcoDI	GTCTC	1 cut(s)	214
BfmI	CTRYAG	1 cut(s)	361
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	2 cut(s)	18, 75
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	2 cut(s)	28, 234
BmiI	GGNNCC	2 cut(s)	55, 235
BmrFI	CCNGG	2 cut(s)	18, 75
BmsI	GCATC	4 cut(s)	423, 464, 511, 562
BpmI	CTGGAG	1 cut(s)	408
Bpu10I	CCTNAGC	2 cut(s)	348, 621
BpuEI	CTTGAG	1 cut(s)	353
Bsa29I	ATCGAT	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	229, 237
BsaWI	WCCGGW	1 cut(s)	445
Bsc4I	CCNNNNNNNGG	1 cut(s)	390
Bse1I	ACTGG	3 cut(s)	391, 488, 599
Bse21I	CCTNAGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	470
BseAI	TCCGGA	1 cut(s)	445
BseBI	CCWGG	2 cut(s)	18, 75
BseCI	ATCGAT	1 cut(s)	206
BseDI	CCNNGG	2 cut(s)	229, 237
BseGI	GGATG	2 cut(s)	479, 490
BseLI	CCNNNNNNNGG	1 cut(s)	390
BseMI	GCAATG	1 cut(s)	470
BseMII	CTCAG	2 cut(s)	189, 339
BseNI	ACTGG	3 cut(s)	391, 488, 599
BseSI	GKGCMC	3 cut(s)	56, 280, 309
BseX3I	CGGCCG	1 cut(s)	95
BsgI	GTGCAG	1 cut(s)	290
Bsh1236I	CGCG	2 cut(s)	132, 408
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	5 cut(s)	5, 97, 196, 236, 626
BshNI	GGYRCC	1 cut(s)	53
BshVI	ATCGAT	1 cut(s)	206
BsiEI	CGRYCG	1 cut(s)	98
BsiHKAI	GWGCWC	3 cut(s)	280, 309, 540
BsiSI	CCGG	1 cut(s)	446
BslI	CCNNNNNNNGG	1 cut(s)	390
BsmAI	GTCTC	1 cut(s)	214
BsnI	GGCC	5 cut(s)	5, 97, 196, 236, 626
Bsp1286I	GDGCHC	4 cut(s)	56, 280, 309, 540
Bsp13I	TCCGGA	1 cut(s)	445
Bsp1407I	TGTACA	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	581
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	3 cut(s)	94, 157, 406
BspANI	GGCC	5 cut(s)	5, 97, 196, 236, 626
BspCNI	CTCAG	2 cut(s)	190, 340
BspDI	ATCGAT	1 cut(s)	206
BspEI	TCCGGA	1 cut(s)	445
BspFNI	CGCG	2 cut(s)	132, 408
BspLI	GGNNCC	2 cut(s)	55, 235
BspPI	GGATC	1 cut(s)	576
BspT107I	GGYRCC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	470
BsrGI	TGTACA	1 cut(s)	299
BsrI	ACTGG	3 cut(s)	391, 488, 599
BssECI	CCNNGG	2 cut(s)	229, 237
BssMI	GATC	1 cut(s)	581
BssSI	CACGAG	1 cut(s)	496
BssT1I	CCWWGG	2 cut(s)	229, 237
Bst2BI	CACGAG	1 cut(s)	496
Bst2UI	CCWGG	2 cut(s)	18, 75
Bst4CI	ACNGT	2 cut(s)	225, 304
Bst6I	CTCTTC	1 cut(s)	638
BstAUI	TGTACA	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	4 cut(s)	198, 327, 348, 621
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	2 cut(s)	479, 490
BstFNI	CGCG	2 cut(s)	132, 408
BstHHI	GCGC	1 cut(s)	639
BstKTI	GATC	1 cut(s)	584
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	581
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	1 cut(s)	474
BstNI	CCWGG	2 cut(s)	18, 75
BstSCI	CCNGG	2 cut(s)	16, 73
BstSFI	CTRYAG	1 cut(s)	361
BstSLI	GKGCMC	3 cut(s)	56, 280, 309
BstUI	CGCG	2 cut(s)	132, 408
BstX2I	RGATCY	1 cut(s)	581
BstYI	RGATCY	1 cut(s)	581
BstZI	CGGCCG	1 cut(s)	95
Bsu15I	ATCGAT	1 cut(s)	206
Bsu36I	CCTNAGG	1 cut(s)	198
BsuRI	GGCC	5 cut(s)	5, 97, 196, 236, 626
BsuTUI	ATCGAT	1 cut(s)	206
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	479, 490
BtsIMutI	CAGTG	3 cut(s)	105, 309, 384
Cac8I	GCNNGC	1 cut(s)	130
CaiI	CAGNNNCTG	1 cut(s)	107
CfoI	GCGC	1 cut(s)	639
Cfr13I	GGNCC	2 cut(s)	28, 234
ClaI	ATCGAT	1 cut(s)	206
CsiI	ACCWGGT	1 cut(s)	73
Csp6I	GTAC	2 cut(s)	300, 373
CviAII	CATG	1 cut(s)	230
CviQI	GTAC	2 cut(s)	300, 373
DdeI	CTNAG	4 cut(s)	198, 327, 348, 621
DpnI	GATC	1 cut(s)	583
DpnII	GATC	1 cut(s)	581
EaeI	YGGCCR	2 cut(s)	3, 95
EagI	CGGCCG	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	638
EarI	CTCTTC	1 cut(s)	638
EclXI	CGGCCG	1 cut(s)	95
Eco130I	CCWWGG	2 cut(s)	229, 237
Eco47I	GGWCC	1 cut(s)	28
Eco52I	CGGCCG	1 cut(s)	95
Eco81I	CCTNAGG	1 cut(s)	198
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	16, 73
EcoT14I	CCWWGG	2 cut(s)	229, 237
ErhI	CCWWGG	2 cut(s)	229, 237
FaeI	CATG	1 cut(s)	233
FaiI	YATR	9 cut(s)	123, 231, 264, 282, 439, 458, 503, 509, 547
FatI	CATG	1 cut(s)	229
Fnu4HI	GCNGC	1 cut(s)	95
FokI	GGATG	2 cut(s)	477, 486
Fsp4HI	GCNGC	1 cut(s)	95
GlaI	GCGC	1 cut(s)	638
GluI	GCNGC	1 cut(s)	95
GsuI	CTGGAG	1 cut(s)	408
HaeIII	GGCC	5 cut(s)	5, 97, 196, 236, 626
HapII	CCGG	1 cut(s)	446
HhaI	GCGC	1 cut(s)	639
Hin1II	CATG	1 cut(s)	233
Hin6I	GCGC	1 cut(s)	637
HinP1I	GCGC	1 cut(s)	637
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	3 cut(s)	35, 178, 203
HpaII	CCGG	1 cut(s)	446
HphI	GGTGA	2 cut(s)	89, 597
Hpy166II	GTNNAC	4 cut(s)	278, 300, 307, 396
Hpy188I	TCNGA	5 cut(s)	103, 177, 256, 553, 565
Hpy188III	TCNNGA	2 cut(s)	316, 446
Hpy8I	GTNNAC	4 cut(s)	278, 300, 307, 396
HpyAV	CCTTC	4 cut(s)	163, 210, 284, 322
HpyCH4III	ACNGT	2 cut(s)	225, 304
HpyCH4V	TGCA	6 cut(s)	271, 278, 307, 463, 477, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	474
HpyF3I	CTNAG	4 cut(s)	198, 327, 348, 621
Hsp92II	CATG	1 cut(s)	233
HspAI	GCGC	1 cut(s)	637
Kpn2I	TCCGGA	1 cut(s)	445
Kzo9I	GATC	1 cut(s)	581
LmnI	GCTCC	3 cut(s)	241, 344, 535
LweI	GCATC	4 cut(s)	423, 464, 511, 562
MabI	ACCWGGT	1 cut(s)	73
MalI	GATC	1 cut(s)	583
MboI	GATC	1 cut(s)	581
MboII	GAAGA	1 cut(s)	530
MfeI	CAATTG	1 cut(s)	513
MflI	RGATCY	1 cut(s)	581
MhlI	GDGCHC	4 cut(s)	56, 280, 309, 540
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	513
MluI	ACGCGT	1 cut(s)	130
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	9 cut(s)	126, 193, 206, 343, 383, 463, 505, 610, 639
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	445
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	264
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	446
MspR9I	CCNGG	2 cut(s)	18, 75
MunI	CAATTG	1 cut(s)	513
MvaI	CCWGG	2 cut(s)	18, 75
MvnI	CGCG	2 cut(s)	132, 408
MwoI	GCNNNNNNNGC	1 cut(s)	474
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	1 cut(s)	581
NlaIII	CATG	1 cut(s)	233
NlaIV	GGNNCC	2 cut(s)	55, 235
PfeI	GAWTC	2 cut(s)	178, 203
PkrI	GCNGC	1 cut(s)	96
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
PpuMI	RGGWCCY	1 cut(s)	28
Psp5II	RGGWCCY	1 cut(s)	28
Psp6I	CCWGG	2 cut(s)	16, 73
PspGI	CCWGG	2 cut(s)	16, 73
PspN4I	GGNNCC	2 cut(s)	55, 235
PspPI	GGNCC	2 cut(s)	28, 234
PspPPI	RGGWCCY	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	581
RsaI	GTAC	2 cut(s)	301, 374
RsaNI	GTAC	2 cut(s)	300, 373
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	1 cut(s)	581
Sau96I	GGNCC	2 cut(s)	28, 234
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	2 cut(s)	18, 75
SduI	GDGCHC	4 cut(s)	56, 280, 309, 540
SexAI	ACCWGGT	1 cut(s)	73
SfaNI	GCATC	4 cut(s)	423, 464, 511, 562
SfcI	CTRYAG	1 cut(s)	361
SinI	GGWCC	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	1 cut(s)	513
SsiI	CCGC	3 cut(s)	94, 157, 406
StyD4I	CCNGG	2 cut(s)	16, 73
StyI	CCWWGG	2 cut(s)	229, 237
TaaI	ACNGT	2 cut(s)	225, 304
TaqI	TCGA	5 cut(s)	70, 144, 181, 206, 288
TasI	AATT	1 cut(s)	513
TatI	WGTACW	2 cut(s)	299, 372
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	2 cut(s)	178, 203
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	3 cut(s)	112, 309, 391
TspDTI	ATGAA	1 cut(s)	479
TspGWI	ACGGA	1 cut(s)	108
TspRI	CASTG	3 cut(s)	112, 309, 391
VneI	GTGCAC	2 cut(s)	276, 305
VpaK11BI	GGWCC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.