RLG00000026695

Bromo adjacent homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001869
Physical Location & Seq
Reverse (-)
5088347 .. 5088869
523 bp
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UTR
Exon/CDS
Intron
RLM00000026695

Sequence Viewer

Length: 429 bp
ATGTATTTTGAACTCACATGTATTGAGAACGTACTGCAAACAACAAACAACGACAACTACTACTTGGATGAGTATGGTAAATCGAATTCCCTCATATTTGCTATATACTCGTTGAGGTGGTACTATCGCATAGGGGAAATCTTAACCTGCACCCCTAGTTTCATCGGAGACAAGGAGCTCATCATCTCTGATCATTATTGTTTTGTGGATGTTGAAACCATTAGCGAAAAATGTAAGGTACACACTTTCTCCGAGTACCAAGGCATCAGTATCGATGAACTGGAAGAGAATGATTATTATTGGCGATTTGAGTATTCTCCTGTGTTACAGAAGTTTAAGGAAGTTTATGTTCCTATGTATTGTGAGTGTCGGCTGCCTGAGAACCCAGATAAAATCATGGTGATGTGTTCCAACTGCGAGAAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

143

Amino Acids

17.1

Weight (kDa)

4.47

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 37 - 115 1.7e-09 BAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 155
AcsI RAATTY 1 cut(s) 85
AfaI GTAC 4 cut(s) 33, 122, 240, 257
AflIII ACRYGT 1 cut(s) 17
AgsI TTSAA 2 cut(s) 11, 215
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 373
ApoI RAATTY 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 412
BanII GRGCYC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 360
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 162
BfaI CTAG 1 cut(s) 156
BfuAI ACCTGC 1 cut(s) 155
BisI GCNGC 1 cut(s) 374
BlsI GCNGC 1 cut(s) 375
BmsI GCATC 1 cut(s) 273
Bsa29I ATCGAT 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bse1I ACTGG 1 cut(s) 285
BseCI ATCGAT 1 cut(s) 273
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 2 cut(s) 73, 214
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 1 cut(s) 285
BseXI GCAGC 1 cut(s) 360
BsgI GTGCAG 1 cut(s) 133
BshVI ATCGAT 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 180
BsmAI GTCTC 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 1 cut(s) 190
BspCNI CTCAG 1 cut(s) 370
BspDI ATCGAT 1 cut(s) 273
BspMI ACCTGC 1 cut(s) 155
BsrI ACTGG 1 cut(s) 285
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 1 cut(s) 190
BssT1I CCWWGG 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 279
BstDEI CTNAG 1 cut(s) 378
BstF5I GGATG 2 cut(s) 73, 214
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 162
BstMBI GATC 1 cut(s) 190
BstNSI RCATGY 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 360
Bsu15I ATCGAT 1 cut(s) 273
BsuTUI ATCGAT 1 cut(s) 273
BtsCI GGATG 2 cut(s) 73, 214
BveI ACCTGC 1 cut(s) 155
ClaI ATCGAT 1 cut(s) 273
Csp6I GTAC 4 cut(s) 32, 121, 239, 256
CviAII CATG 2 cut(s) 18, 397
CviJI RGCY 2 cut(s) 178, 373
CviKI_1 RGCY 2 cut(s) 178, 373
CviQI GTAC 4 cut(s) 32, 121, 239, 256
DdeI CTNAG 1 cut(s) 378
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 178
EcoRI GAATTC 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 259
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 2 cut(s) 21, 400
FaiI YATR 9 cut(s) 19, 75, 95, 104, 106, 131, 348, 356, 398
FatI CATG 2 cut(s) 17, 396
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 374
FokI GGATG 2 cut(s) 80, 221
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 374
FspBI CTAG 1 cut(s) 156
GluI GCNGC 1 cut(s) 374
Hin1II CATG 2 cut(s) 21, 400
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 3 cut(s) 167, 190, 253
Hpy8I GTNNAC 1 cut(s) 241
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 2 cut(s) 37, 150
HpyF3I CTNAG 1 cut(s) 378
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 2 cut(s) 21, 400
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 5 cut(s) 160, 266, 333, 390, 399
Lsp1109I GCAGC 1 cut(s) 360
LweI GCATC 1 cut(s) 273
MaeI CTAG 1 cut(s) 156
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 324
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 1 cut(s) 296
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 1 cut(s) 85
MnlI CCTC 2 cut(s) 101, 108
MseI TTAA 2 cut(s) 143, 336
MslI CAYNNNNRTG 1 cut(s) 401
NdeII GATC 1 cut(s) 190
NlaIII CATG 2 cut(s) 21, 400
NspI RCATGY 1 cut(s) 21
PciI ACATGT 1 cut(s) 17
PkrI GCNGC 1 cut(s) 375
PscI ACATGT 1 cut(s) 17
Psp124BI GAGCTC 1 cut(s) 180
RsaI GTAC 4 cut(s) 33, 122, 240, 257
RsaNI GTAC 4 cut(s) 32, 121, 239, 256
RseI CAYNNNNRTG 1 cut(s) 401
SacI GAGCTC 1 cut(s) 180
SaqAI TTAA 2 cut(s) 143, 336
SatI GCNGC 1 cut(s) 374
Sau3AI GATC 1 cut(s) 190
SduI GDGCHC 1 cut(s) 180
SetI ASST 5 cut(s) 33, 119, 149, 180, 240
SfaNI GCATC 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 401
Sse9I AATT 1 cut(s) 85
SspMI CTAG 1 cut(s) 156
SstI GAGCTC 1 cut(s) 180
StyI CCWWGG 1 cut(s) 259
TaiI ACGT 1 cut(s) 33
TaqI TCGA 2 cut(s) 83, 273
TasI AATT 1 cut(s) 85
Tru1I TTAA 2 cut(s) 143, 336
Tru9I TTAA 2 cut(s) 143, 336
TseI GCWGC 1 cut(s) 373
TspDTI ATGAA 2 cut(s) 151, 291
XapI RAATTY 1 cut(s) 85
XceI RCATGY 1 cut(s) 21
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.