Rmu_ssc0000001.1_g000006

BAH and coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000001.1
OG0001869
Physical Location & Seq
Reverse (-)
17161 .. 24244
7084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000001.1_g000006.1.cds

Sequence Viewer

Length: 435 bp
atgatctgctttagcttaaataggttgtttcggtttttcttgtcgaggtttgcttgtagtgcgaacaccattgagggcaagtgtgtggttcactcgtttaagaattacacgaagctcgaaaatgtgggagctgaggactactactgtaggtttgagtacaaggctgctactggggcttttgctcctgatagagttgctgtgtattgcaagtgtgagatgccctataacccggatgacctcatggtgcagtgtgaggagtgcaaagactggtttcatccagcatgtgtgaacatctccaatgaggtagccaaaaaattggagcactatatatgttccgaatgttcagctgacgaggatgtgaaaaaacctcagagctcagtttcagcatcacttgcagatgatgtcaaggtggaccctaagcgccgaaagaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

144

Amino Acids

16.5

Weight (kDa)

6.8

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 158
AluBI AGCT 5 cut(s) 15, 115, 131, 347, 375
AluI AGCT 5 cut(s) 15, 115, 131, 347, 375
Alw21I GWGCWC 2 cut(s) 324, 377
ApeKI GCWGC 1 cut(s) 164
AspLEI GCGC 1 cut(s) 423
AspS9I GGNCC 1 cut(s) 412
AsuC2I CCSGG 1 cut(s) 230
AvaII GGWCC 1 cut(s) 412
BanII GRGCYC 1 cut(s) 377
Bbv12I GWGCWC 2 cut(s) 324, 377
BbvCI CCTCAGC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 151
BcnI CCSGG 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 145
BfoI RGCGCY 1 cut(s) 424
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 412
BmiI GGNNCC 1 cut(s) 414
BmrFI CCNGG 1 cut(s) 230
BmrI ACTGGG 1 cut(s) 180
BmsI GCATC 2 cut(s) 207, 395
BmuI ACTGGG 1 cut(s) 180
Bpu10I CCTNAGC 2 cut(s) 132, 417
BpuMI CCSGG 1 cut(s) 230
Bse1I ACTGG 2 cut(s) 175, 272
BseGI GGATG 3 cut(s) 238, 274, 361
BseMII CTCAG 3 cut(s) 123, 383, 390
BseNI ACTGG 2 cut(s) 175, 272
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 1 cut(s) 151
BsgI GTGCAG 1 cut(s) 266
BsiHKAI GWGCWC 2 cut(s) 324, 377
BsiSI CCGG 1 cut(s) 230
Bsp1286I GDGCHC 2 cut(s) 324, 377
Bsp143I GATC 1 cut(s) 3
BspCNI CTCAG 3 cut(s) 124, 382, 389
BspLI GGNNCC 1 cut(s) 414
BsrI ACTGG 2 cut(s) 175, 272
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 1 cut(s) 146
BstAPI GCANNNNNTGC 1 cut(s) 392
BstDEI CTNAG 4 cut(s) 132, 369, 376, 417
BstF5I GGATG 3 cut(s) 238, 274, 361
BstH2I RGCGCY 1 cut(s) 424
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 3 cut(s) 59, 173, 392
BstNSI RCATGY 1 cut(s) 285
BstSCI CCNGG 1 cut(s) 228
BstSFI CTRYAG 1 cut(s) 145
BstV1I GCAGC 1 cut(s) 151
BstXI CCANNNNNNTGG 1 cut(s) 316
BtsCI GGATG 3 cut(s) 238, 274, 361
BtsI GCAGTG 1 cut(s) 254
BtsIMutI CAGTG 1 cut(s) 254
CfoI GCGC 1 cut(s) 423
Cfr13I GGNCC 1 cut(s) 412
Csp6I GTAC 1 cut(s) 157
CviAII CATG 2 cut(s) 241, 282
CviJI RGCY 8 cut(s) 15, 115, 131, 164, 176, 308, 347, 375
CviKI_1 RGCY 8 cut(s) 15, 115, 131, 164, 176, 308, 347, 375
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 4 cut(s) 132, 369, 376, 417
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 377
Eco47I GGWCC 1 cut(s) 412
Eco53kI GAGCTC 1 cut(s) 375
EcoICRI GAGCTC 1 cut(s) 375
EcoT38I GRGCYC 1 cut(s) 377
FaeI CATG 2 cut(s) 244, 285
FaiI YATR 6 cut(s) 225, 242, 283, 327, 329, 331
FatI CATG 2 cut(s) 240, 281
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 3 cut(s) 245, 261, 368
FriOI GRGCYC 1 cut(s) 377
Fsp4HI GCNGC 1 cut(s) 165
GlaI GCGC 1 cut(s) 422
GluI GCNGC 1 cut(s) 165
HaeII RGCGCY 1 cut(s) 424
HapII CCGG 1 cut(s) 230
HhaI GCGC 1 cut(s) 423
Hin1II CATG 2 cut(s) 244, 285
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HpaII CCGG 1 cut(s) 230
Hpy166II GTNNAC 3 cut(s) 91, 289, 412
Hpy188I TCNGA 2 cut(s) 337, 372
Hpy188III TCNNGA 1 cut(s) 185
Hpy8I GTNNAC 3 cut(s) 91, 289, 412
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4V TGCA 4 cut(s) 207, 247, 261, 395
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 173, 392
HpyF3I CTNAG 4 cut(s) 132, 369, 376, 417
Hsp92II CATG 2 cut(s) 244, 285
HspAI GCGC 1 cut(s) 421
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 3 cut(s) 128, 187, 319
LpnPI CCDG 5 cut(s) 156, 198, 243, 253, 291
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 2 cut(s) 207, 395
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MhlI GDGCHC 2 cut(s) 324, 377
MluCI AATT 2 cut(s) 103, 314
MnlI CCTC 8 cut(s) 39, 67, 127, 247, 248, 295, 346, 378
MseI TTAA 2 cut(s) 17, 99
MspA1I CMGCKG 1 cut(s) 347
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 230
MwoI GCNNNNNNNGC 3 cut(s) 59, 173, 392
NciI CCSGG 1 cut(s) 230
NdeII GATC 1 cut(s) 3
NlaIII CATG 2 cut(s) 244, 285
NlaIV GGNNCC 1 cut(s) 414
NspI RCATGY 1 cut(s) 285
PkrI GCNGC 1 cut(s) 166
Psp124BI GAGCTC 1 cut(s) 377
PspN4I GGNNCC 1 cut(s) 414
PspPI GGNCC 1 cut(s) 412
PvuII CAGCTG 1 cut(s) 347
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SacI GAGCTC 1 cut(s) 377
SaqAI TTAA 2 cut(s) 17, 99
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 412
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 2 cut(s) 324, 377
SfaNI GCATC 2 cut(s) 207, 395
SfcI CTRYAG 1 cut(s) 145
SinI GGWCC 1 cut(s) 412
Sse9I AATT 2 cut(s) 103, 314
SstI GAGCTC 1 cut(s) 377
StyD4I CCNGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 146
TaqI TCGA 2 cut(s) 44, 117
TasI AATT 2 cut(s) 103, 314
TatI WGTACW 1 cut(s) 156
Tru1I TTAA 2 cut(s) 17, 99
Tru9I TTAA 2 cut(s) 17, 99
TscAI CASTG 1 cut(s) 254
TseI GCWGC 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 263
TspRI CASTG 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 412
XceI RCATGY 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.