Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001869

Physical Location & Seq

Genomic Coordinates Reverse (-)

12927700 .. 12931962

Gene Structure 4263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00091380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCCAAGACCAAACCTGGCAAGAAGGACCTTGACTCCTACAACATCAAGGGCACCAACAAAGCCGTTCGGGTTGGGGATTGTGTGTTGATGAGACCATCGGACACTGATAAGCCTCCATACGTGGCAAGGGTGGAGAAGCTTGAAGCTGACCACCGGAACAATGTGAAGGTTCGGGTTCGATGGTATTACCGGCCGGAGGAGTCAATAGGAGGAAGGAGACAGTTCCATGGAGCTAAGGAACTGTTTTTGTCGGACCACTTTGATGTGCAGAGTGCACACACTATCGAAGGGAAGTGTACAGTCCACTCCTTCAAGAACTACACTAAGCTTGAGAATGTGGGAGCTGAAGACTATTTTTGTAGGTTTGAGTATAAAGCTGCCACTGGTGGTTTCACACCGGACCGTGTGGCTGTGTATTGTAAATGTGAGATGCCATACAATCCGGACGACCTTATGGTGCAGTGTGAGGGATGCAAGGACTGGTTTCATCCCTCTTGTATGGGTATGTCCATTGAAGATGCCAAAAAGTTGGAACACTTCCTCTGTTCTGACTGTTCATCTGATGATGATGCCAAAAGATCCATGAATGCATTTCCAATGTCACCCTCTGTTGAGACTAAGTATAGGTTGAGCCAAAGCGCCGGAAGAGATGACCTTGTGATTGGGATGCTTAGCGAGGAGGTATTCAACTTCTTTGGCATTACCTCCAGTGTTGTGTGTTGTGGAAATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032991 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH PHD

Protein Analysis

245

Amino Acids

27.75

Weight (kDa)

6.39

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	23 - 134	6.6e-25	BAH domain
PHD	PF00628	141 - 186	1e-08	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04260 AT4G22140 AT4G22140 AT4G22140
fragaria_vesca	FvH4_3g01411 FvH4_6g42580
malus_domestica	MD05G1352300.v1.1 MD09G1112400.v1.1 MD10G1326300.v1.1 MD11G1102600.v1.1 MD11G1102700.v1.1 MD17G1102500.v1.1
prunus_persica	Prupe.3G212300_v2.0.a1 Prupe.3G212300_v2.0.a1 Prupe.3G212300_v2.0.a1 Prupe.3G212300_v2.0.a1 Prupe.4G015400_v2.0.a1
pyrus_communis	pycom05g31920 pycom10g27630 pycom17g09690
rosa_chinensis	RchiOBHm_Chr2g0158431 RchiOBHm_Chr5g0002141
rosa_laevigata	RLG00000021087 RLG00000026695 RLG00000031000
rosa_multiflora	Rmu_sc0004855.1_g000006 Rmu_ssc0000001.1_g000006
rosa_roxburghii	Rroxscaffold_1G00024330 Rroxscaffold_1G00073770 Rroxscaffold_2G00091380
rosa_rugosa	Rorug02G0468700 Rorug02G0468800 Rorug02G0468900 Rorug04G0394600
rosa_samantha	Rh2AG534800 Rh2BG548200 Rh2CG518600 Rh2DG557800 Rh5AG016400 Rh5BG019900 Rh5CG017700 Rh5CG364100 Rh5CG364200 Rh5DG017900
rosa_wichuraiana	Rw2G044290 Rw5G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	53
AccIII	TCCGGA	1 cut(s)	445
AclWI	GGATC	1 cut(s)	576
AcoI	YGGCCR	2 cut(s)	3, 194
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	1 cut(s)	301
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	4 cut(s)	146, 316, 518, 691
AjnI	CCWGG	1 cut(s)	16
AluBI	AGCT	6 cut(s)	142, 149, 236, 331, 347, 380
AluI	AGCT	6 cut(s)	142, 149, 236, 331, 347, 380
Alw21I	GWGCWC	1 cut(s)	280
Alw26I	GTCTC	3 cut(s)	88, 214, 611
Alw44I	GTGCAC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	576
Aor13HI	TCCGGA	1 cut(s)	445
AoxI	GGCC	2 cut(s)	3, 194
ApaLI	GTGCAC	1 cut(s)	276
ApeKI	GCWGC	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	644
AspS9I	GGNCC	3 cut(s)	28, 256, 403
AsuHPI	GGTGA	1 cut(s)	597
AvaII	GGWCC	3 cut(s)	28, 256, 403
BaeGI	GKGCMC	2 cut(s)	56, 280
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	280
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	2 cut(s)	106, 177
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	18
BcoDI	GTCTC	3 cut(s)	88, 214, 611
BfoI	RGCGCY	1 cut(s)	645
BisI	GCNGC	1 cut(s)	381
BlpI	GCTNAGC	1 cut(s)	674
BlsI	GCNGC	1 cut(s)	382
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	3 cut(s)	28, 256, 403
BmgT120I	GGNCC	3 cut(s)	28, 256, 403
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	5 cut(s)	423, 464, 511, 562, 660
BpiI	GAAGAC	1 cut(s)	357
BpmI	CTGGAG	1 cut(s)	694
Bpu10I	CCTNAGC	1 cut(s)	237
Bpu1102I	GCTNAGC	1 cut(s)	674
BpuEI	CTTGAG	1 cut(s)	353
BsaAI	YACGTR	1 cut(s)	124
BsaI	GGTCTC	1 cut(s)	88
BsaJI	CCNNGG	1 cut(s)	229
BsaWI	WCCGGW	3 cut(s)	156, 400, 445
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse118I	RCCGGY	1 cut(s)	192
Bse1I	ACTGG	3 cut(s)	391, 488, 711
BseAI	TCCGGA	1 cut(s)	445
BseBI	CCWGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	3 cut(s)	479, 490, 675
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseNI	ACTGG	3 cut(s)	391, 488, 711
BseRI	GAGGAG	2 cut(s)	215, 695
BseSI	GKGCMC	2 cut(s)	56, 280
BseX3I	CGGCCG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	367
BsgI	GTGCAG	2 cut(s)	290, 482
Bsh1285I	CGRYCG	1 cut(s)	197
BshFI	GGCC	2 cut(s)	5, 196
BshNI	GGYRCC	1 cut(s)	53
BsiEI	CGRYCG	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	280
BsiSI	CCGG	6 cut(s)	157, 193, 197, 401, 446, 645
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmAI	GTCTC	3 cut(s)	88, 214, 611
BsmI	GAATGC	1 cut(s)	595
BsnI	GGCC	2 cut(s)	5, 196
Bso31I	GGTCTC	1 cut(s)	88
Bsp1286I	GDGCHC	2 cut(s)	56, 280
Bsp13I	TCCGGA	1 cut(s)	445
Bsp1407I	TGTACA	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	581
Bsp1720I	GCTNAGC	1 cut(s)	674
Bsp19I	CCATGG	1 cut(s)	229
BspANI	GGCC	2 cut(s)	5, 196
BspEI	TCCGGA	1 cut(s)	445
BspLI	GGNNCC	1 cut(s)	55
BspPI	GGATC	1 cut(s)	576
BspT107I	GGYRCC	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	192
BsrGI	TGTACA	1 cut(s)	299
BsrI	ACTGG	3 cut(s)	391, 488, 711
BssAI	RCCGGY	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	1 cut(s)	581
BssT1I	CCWWGG	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	5 cut(s)	225, 246, 304, 407, 557
Bst6I	CTCTTC	1 cut(s)	643
BstAUI	TGTACA	1 cut(s)	299
BstBAI	YACGTR	1 cut(s)	124
BstDEI	CTNAG	4 cut(s)	237, 327, 621, 674
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	3 cut(s)	479, 490, 675
BstH2I	RGCGCY	1 cut(s)	645
BstHHI	GCGC	1 cut(s)	644
BstKTI	GATC	1 cut(s)	584
BstMAI	GTCTC	3 cut(s)	88, 214, 611
BstMBI	GATC	1 cut(s)	581
BstMCI	CGRYCG	1 cut(s)	197
BstNI	CCWGG	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	16
BstSLI	GKGCMC	2 cut(s)	56, 280
BstV1I	GCAGC	1 cut(s)	367
BstV2I	GAAGAC	1 cut(s)	357
BstX2I	RGATCY	1 cut(s)	581
BstXI	CCANNNNNNTGG	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	581
BstZI	CGGCCG	1 cut(s)	194
BsuRI	GGCC	2 cut(s)	5, 196
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	3 cut(s)	479, 490, 675
BtsI	GCAGTG	1 cut(s)	470
BtsIMutI	CAGTG	4 cut(s)	105, 384, 470, 718
CfoI	GCGC	1 cut(s)	644
Cfr10I	RCCGGY	1 cut(s)	192
Cfr13I	GGNCC	3 cut(s)	28, 256, 403
CpoI	CGGWCCG	1 cut(s)	403
Csp6I	GTAC	1 cut(s)	300
CspI	CGGWCCG	1 cut(s)	403
CviAII	CATG	2 cut(s)	230, 586
CviQI	GTAC	1 cut(s)	300
DdeI	CTNAG	4 cut(s)	237, 327, 621, 674
DpnI	GATC	1 cut(s)	583
DpnII	GATC	1 cut(s)	581
EaeI	YGGCCR	2 cut(s)	3, 194
EagI	CGGCCG	1 cut(s)	194
Eam1104I	CTCTTC	1 cut(s)	643
EarI	CTCTTC	1 cut(s)	643
EclXI	CGGCCG	1 cut(s)	194
Eco130I	CCWWGG	1 cut(s)	229
Eco31I	GGTCTC	1 cut(s)	88
Eco47I	GGWCC	3 cut(s)	28, 256, 403
Eco52I	CGGCCG	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	369
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	16
EcoT14I	CCWWGG	1 cut(s)	229
EcoT22I	ATGCAT	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	229
FaeI	CATG	2 cut(s)	233, 589
FatI	CATG	2 cut(s)	229, 585
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	3 cut(s)	477, 486, 682
Fsp4HI	GCNGC	1 cut(s)	381
GlaI	GCGC	1 cut(s)	643
GluI	GCNGC	1 cut(s)	381
GsuI	CTGGAG	1 cut(s)	694
HaeII	RGCGCY	1 cut(s)	645
HaeIII	GGCC	2 cut(s)	5, 196
HapII	CCGG	6 cut(s)	157, 193, 197, 401, 446, 645
HhaI	GCGC	1 cut(s)	644
Hin1II	CATG	2 cut(s)	233, 589
Hin6I	GCGC	1 cut(s)	642
HinP1I	GCGC	1 cut(s)	642
HindIII	AAGCTT	2 cut(s)	140, 329
HinfI	GANTC	2 cut(s)	35, 203
HpaII	CCGG	6 cut(s)	157, 193, 197, 401, 446, 645
HphI	GGTGA	1 cut(s)	597
Hpy166II	GTNNAC	3 cut(s)	278, 300, 307
Hpy188I	TCNGA	4 cut(s)	103, 256, 553, 565
Hpy188III	TCNNGA	2 cut(s)	316, 446
Hpy8I	GTNNAC	3 cut(s)	278, 300, 307
HpyAV	CCTTC	5 cut(s)	19, 163, 210, 284, 322
HpyCH4III	ACNGT	5 cut(s)	225, 246, 304, 407, 557
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	5 cut(s)	271, 278, 463, 477, 593
HpyF3I	CTNAG	4 cut(s)	237, 327, 621, 674
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	233, 589
HspAI	GCGC	1 cut(s)	642
Kpn2I	TCCGGA	1 cut(s)	445
Kzo9I	GATC	1 cut(s)	581
LmnI	GCTCC	2 cut(s)	233, 344
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	5 cut(s)	423, 464, 511, 562, 660
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	603
MalI	GATC	1 cut(s)	583
MboI	GATC	1 cut(s)	581
MboII	GAAGA	3 cut(s)	362, 530, 660
MflI	RGATCY	1 cut(s)	581
MhlI	GDGCHC	2 cut(s)	56, 280
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	29, 212
MmeI	TCCRAC	2 cut(s)	234, 513
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	595
MroI	TCCGGA	1 cut(s)	445
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	264
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	6 cut(s)	157, 193, 197, 401, 446, 645
MspR9I	CCNGG	1 cut(s)	18
Mva1269I	GAATGC	1 cut(s)	595
MvaI	CCWGG	1 cut(s)	18
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	1 cut(s)	581
NlaIII	CATG	2 cut(s)	233, 589
NlaIV	GGNNCC	1 cut(s)	55
NmuCI	GTSAC	1 cut(s)	603
NsiI	ATGCAT	1 cut(s)	595
PctI	GAATGC	1 cut(s)	595
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	2 cut(s)	29, 211
PpsI	GAGTC	2 cut(s)	29, 211
Ppu21I	YACGTR	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	28
Psp5II	RGGWCCY	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	55
PspPI	GGNCC	3 cut(s)	28, 256, 403
PspPPI	RGGWCCY	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	581
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
RseI	CAYNNNNRTG	1 cut(s)	264
Rsr2I	CGGWCCG	1 cut(s)	403
RsrII	CGGWCCG	1 cut(s)	403
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	1 cut(s)	581
Sau96I	GGNCC	3 cut(s)	28, 256, 403
SchI	GAGTC	2 cut(s)	29, 212
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	2 cut(s)	56, 280
SfaNI	GCATC	5 cut(s)	423, 464, 511, 562, 660
SinI	GGWCC	3 cut(s)	28, 256, 403
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
StyD4I	CCNGG	1 cut(s)	16
StyI	CCWWGG	1 cut(s)	229
TaaI	ACNGT	5 cut(s)	225, 246, 304, 407, 557
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	181, 288
TatI	WGTACW	1 cut(s)	299
TscAI	CASTG	4 cut(s)	112, 391, 470, 718
TseFI	GTSAC	1 cut(s)	603
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	1 cut(s)	603
TspDTI	ATGAA	3 cut(s)	479, 549, 602
TspRI	CASTG	4 cut(s)	112, 391, 470, 718
VneI	GTGCAC	1 cut(s)	276
VpaK11BI	GGWCC	3 cut(s)	28, 256, 403
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.