RLG00000031000

BAH and coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001869
Physical Location & Seq
Forward (+)
1295133 .. 1297584
2452 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031000

Sequence Viewer

Length: 534 bp
ATGGCCAAAACCAGACCCGGAAAAAAAGACGTGGACTCCTACACTATCAGAGGCACCAACAAGGTCGTCCGAGCTGGGGATTGTGTGCTGATGCGGCCGTCGGATGTGGGGAAGCCGCAATACGTGGCGCGAATCGAGAAGATTGAGACTGACAGCAAGAGCAATGCGAAGGTGAGAGTGAGGTGGTACTATAGGCCTGAGGAGTCTATTGGAGGGCGCAGGCAGTTCCATGGGTCCAAAGAGCTCTTCTTGTCTGACCACTATGATGTTCAGAGTGCGAACACCATTGAGGGCAAGTGTGTGGTTCACTCGTTCAAGAATTACACGAAGCTCGAAAATGTGGGAGCTGAGGACTACTACTGTAGGTTTGATGACTCGGTGTATGTGCAATGTGCTACTTGCAAGTCCAAAAAATTGGAGCACTATATATGTTCCGAATGTTCAGCTGACGAGGATGTGAAAAAACCTCAGAACTCAGTTTCAGCATCACTTGCAGATGATGTCAAGGTGGACCCTAAGCGCCGAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

178

Amino Acids

20.2

Weight (kDa)

9.07

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 23 - 123 3.2e-23 BAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 53
AccII CGCG 1 cut(s) 130
AciI CCGC 2 cut(s) 94, 116
AcoI YGGCCR 2 cut(s) 3, 95
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 1 cut(s) 316
AjiI CACGTC 1 cut(s) 31
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
AluBI AGCT 5 cut(s) 74, 244, 331, 347, 446
AluI AGCT 5 cut(s) 74, 244, 331, 347, 446
Alw21I GWGCWC 2 cut(s) 246, 423
Alw26I GTCTC 1 cut(s) 140
AoxI GGCC 3 cut(s) 3, 95, 194
AspLEI GCGC 3 cut(s) 130, 219, 522
AspS9I GGNCC 2 cut(s) 234, 511
AsuC2I CCSGG 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 184
AvaII GGWCC 2 cut(s) 234, 511
AxyI CCTNAGG 1 cut(s) 198
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 53
BanII GRGCYC 1 cut(s) 246
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
Bbv12I GWGCWC 2 cut(s) 246, 423
BbvCI CCTCAGC 1 cut(s) 348
BceAI ACGGC 1 cut(s) 82
BcnI CCSGG 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 140
BfmI CTRYAG 2 cut(s) 190, 361
BfoI RGCGCY 1 cut(s) 523
BisI GCNGC 2 cut(s) 95, 116
BlsI GCNGC 2 cut(s) 96, 117
Bme1390I CCNGG 1 cut(s) 18
Bme18I GGWCC 2 cut(s) 234, 511
BmgBI CACGTC 1 cut(s) 31
BmgT120I GGNCC 2 cut(s) 234, 511
BmiI GGNNCC 3 cut(s) 55, 235, 513
BmrFI CCNGG 1 cut(s) 18
BmsI GCATC 2 cut(s) 81, 494
Bpu10I CCTNAGC 2 cut(s) 348, 516
BpuMI CCSGG 1 cut(s) 18
BsaAI YACGTR 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 229
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse21I CCTNAGG 1 cut(s) 198
Bse3DI GCAATG 2 cut(s) 169, 395
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 2 cut(s) 109, 460
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMI GCAATG 2 cut(s) 169, 395
BseMII CTCAG 4 cut(s) 189, 339, 482, 489
BseRI GAGGAG 1 cut(s) 215
BseX3I CGGCCG 1 cut(s) 95
BseYI CCCAGC 1 cut(s) 74
Bsh1236I CGCG 1 cut(s) 130
Bsh1285I CGRYCG 1 cut(s) 98
BshFI GGCC 3 cut(s) 5, 97, 196
BshNI GGYRCC 1 cut(s) 53
BsiEI CGRYCG 1 cut(s) 98
BsiHKAI GWGCWC 2 cut(s) 246, 423
BsiSI CCGG 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 140
BsnI GGCC 3 cut(s) 5, 97, 196
Bsp1286I GDGCHC 2 cut(s) 246, 423
Bsp19I CCATGG 1 cut(s) 229
BspACI CCGC 2 cut(s) 94, 116
BspANI GGCC 3 cut(s) 5, 97, 196
BspCNI CTCAG 4 cut(s) 190, 340, 481, 488
BspFNI CGCG 1 cut(s) 130
BspLI GGNNCC 3 cut(s) 55, 235, 513
BspQI GCTCTTC 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 53
BsrDI GCAATG 2 cut(s) 169, 395
BssECI CCNNGG 1 cut(s) 229
BssT1I CCWWGG 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 1 cut(s) 251
BstAPI GCANNNNNTGC 1 cut(s) 491
BstBAI YACGTR 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 221
BstDEI CTNAG 5 cut(s) 198, 348, 468, 475, 516
BstDSI CCRYGG 1 cut(s) 229
BstF5I GGATG 2 cut(s) 109, 460
BstFNI CGCG 1 cut(s) 130
BstH2I RGCGCY 1 cut(s) 523
BstHHI GCGC 3 cut(s) 130, 219, 522
BstMAI GTCTC 1 cut(s) 140
BstMCI CGRYCG 1 cut(s) 98
BstMWI GCNNNNNNNGC 2 cut(s) 94, 491
BstSCI CCNGG 1 cut(s) 16
BstSFI CTRYAG 2 cut(s) 190, 361
BstUI CGCG 1 cut(s) 130
BstXI CCANNNNNNTGG 1 cut(s) 415
BstZI CGGCCG 1 cut(s) 95
Bsu36I CCTNAGG 1 cut(s) 198
BsuRI GGCC 3 cut(s) 5, 97, 196
BtgI CCRYGG 1 cut(s) 229
BtrI CACGTC 1 cut(s) 31
BtsCI GGATG 2 cut(s) 109, 460
Cac8I GCNNGC 1 cut(s) 221
CfoI GCGC 3 cut(s) 130, 219, 522
Cfr13I GGNCC 2 cut(s) 234, 511
Csp6I GTAC 1 cut(s) 187
CviAII CATG 1 cut(s) 230
CviJI RGCY 9 cut(s) 5, 74, 97, 115, 196, 244, 331, 347, 446
CviKI_1 RGCY 9 cut(s) 5, 74, 97, 115, 196, 244, 331, 347, 446
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 5 cut(s) 198, 348, 468, 475, 516
EaeI YGGCCR 2 cut(s) 3, 95
EagI CGGCCG 1 cut(s) 95
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Ecl136II GAGCTC 1 cut(s) 244
EclXI CGGCCG 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 229
Eco147I AGGCCT 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 246
Eco47I GGWCC 2 cut(s) 234, 511
Eco52I CGGCCG 1 cut(s) 95
Eco53kI GAGCTC 1 cut(s) 244
Eco81I CCTNAGG 1 cut(s) 198
EcoICRI GAGCTC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 229
FaeI CATG 1 cut(s) 233
FaiI YATR 7 cut(s) 192, 231, 264, 384, 426, 428, 430
FatI CATG 1 cut(s) 229
Fnu4HI GCNGC 2 cut(s) 95, 116
FokI GGATG 2 cut(s) 116, 467
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 2 cut(s) 95, 116
GlaI GCGC 3 cut(s) 129, 218, 521
GluI GCNGC 2 cut(s) 95, 116
GsaI CCCAGC 1 cut(s) 78
HaeII RGCGCY 1 cut(s) 523
HaeIII GGCC 3 cut(s) 5, 97, 196
HapII CCGG 1 cut(s) 18
HhaI GCGC 3 cut(s) 130, 219, 522
Hin1II CATG 1 cut(s) 233
Hin6I GCGC 3 cut(s) 128, 217, 520
HinP1I GCGC 3 cut(s) 128, 217, 520
HinfI GANTC 4 cut(s) 35, 132, 203, 374
HpaII CCGG 1 cut(s) 18
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 3 cut(s) 34, 307, 511
Hpy188I TCNGA 7 cut(s) 50, 71, 103, 256, 273, 436, 471
Hpy188III TCNNGA 2 cut(s) 136, 316
Hpy8I GTNNAC 3 cut(s) 34, 307, 511
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4IV ACGT 2 cut(s) 30, 123
HpyCH4V TGCA 3 cut(s) 388, 402, 494
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 491
HpyF3I CTNAG 5 cut(s) 198, 348, 468, 475, 516
HpySE526I ACGT 2 cut(s) 30, 123
Hsp92II CATG 1 cut(s) 233
HspAI GCGC 3 cut(s) 128, 217, 520
LguI GCTCTTC 1 cut(s) 251
LmnI GCTCC 2 cut(s) 344, 418
LpnPI CCDG 5 cut(s) 25, 31, 60, 205, 210
LweI GCATC 2 cut(s) 81, 494
MaeII ACGT 2 cut(s) 30, 123
MboII GAAGA 2 cut(s) 151, 238
MhlI GDGCHC 2 cut(s) 246, 423
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 319, 413
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 29, 212, 368
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 8 cut(s) 44, 174, 193, 206, 283, 343, 445, 477
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 264
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 18
MvnI CGCG 1 cut(s) 130
MwoI GCNNNNNNNGC 2 cut(s) 94, 491
NciI CCSGG 1 cut(s) 18
NcoI CCATGG 1 cut(s) 229
NlaIII CATG 1 cut(s) 233
NlaIV GGNNCC 3 cut(s) 55, 235, 513
PceI AGGCCT 1 cut(s) 196
PciSI GCTCTTC 1 cut(s) 251
PfeI GAWTC 1 cut(s) 132
PkrI GCNGC 2 cut(s) 96, 117
PleI GAGTC 3 cut(s) 29, 211, 368
PpsI GAGTC 3 cut(s) 29, 211, 368
Ppu21I YACGTR 1 cut(s) 124
Psp124BI GAGCTC 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 74
PspN4I GGNNCC 3 cut(s) 55, 235, 513
PspPI GGNCC 2 cut(s) 234, 511
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 264
SacI GAGCTC 1 cut(s) 246
SapI GCTCTTC 1 cut(s) 251
SatI GCNGC 2 cut(s) 95, 116
Sau96I GGNCC 2 cut(s) 234, 511
SchI GAGTC 3 cut(s) 29, 212, 368
ScrFI CCNGG 1 cut(s) 18
SduI GDGCHC 2 cut(s) 246, 423
SfaNI GCATC 2 cut(s) 81, 494
SfcI CTRYAG 2 cut(s) 190, 361
SinI GGWCC 2 cut(s) 234, 511
SmiMI CAYNNNNRTG 1 cut(s) 264
Sse9I AATT 2 cut(s) 319, 413
SseBI AGGCCT 1 cut(s) 196
SsiI CCGC 2 cut(s) 94, 116
SstI GAGCTC 1 cut(s) 246
StuI AGGCCT 1 cut(s) 196
StyD4I CCNGG 1 cut(s) 16
StyI CCWWGG 1 cut(s) 229
TaaI ACNGT 1 cut(s) 362
TaiI ACGT 2 cut(s) 33, 126
TaqI TCGA 2 cut(s) 135, 333
TasI AATT 2 cut(s) 319, 413
TauI GCSGC 2 cut(s) 97, 118
TfiI GAWTC 1 cut(s) 132
VpaK11BI GGWCC 2 cut(s) 234, 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.