Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001869

Physical Location & Seq

Genomic Coordinates Forward (+)

729275 .. 732158

Gene Structure 2884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g01411.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCCAAAACCAGACCCGGAAAAAAGGACATCGACGCCTACACTATCAGAGGCACCAACAAGGTGGTGAGAGCTGGAGACTGTGTGCTGATGCGGCCGTCGGATGTGGGGAAGCCGCAATACGTGGCGCGAATCGAGAAGATTGAGAGTGACAGCAAGAGCAATGCCAAGGTGAAAGTGAGGTGGTACTACAGGCCTGAGGAGTCTATTGGAGGGCGCAGGCAGTTCCATGGCTCGAAAGAGCTGTTCTTGTCGGACCATTACGATATGCAGAGTGCGAATACAATAGAGGGCAAGTGTGTGGTTCACTCTTTCAAGAACTACACCAAGCTGGAAAATGTGGGGGCTGAGGATTACTACTGTAGGTTTGAGTACAAGGCTGCTACTGGGGCTTTTACTCCGGATAGAGTTGCTGTGTATTGCAAGTGTGAGATGCCGTATAACCCGGATGACCTCATGGTGCAGTGTGAGGAGTGCAAAGATTGGTTTCATCCAGCATGTGTGAACCTCTCAAATGAAGTAGCCAAAAAACTGGAGCACTATATATGTTCAGAATGTTCAGCTGACGAGGATGTGAAAAAGCCTGAGAACTCATATTCAGCATCATTTGCAGATGATGTCAAGGTGGACCCTAAGCGCCGAAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH PHD

Protein Analysis

217

Amino Acids

24.77

Weight (kDa)

8.23

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	23 - 134	4.1e-24	BAH domain
PHD_5	PF20826	139 - 186	2.6e-06	PhD finger domain
PHD	PF00628	141 - 186	1.1e-08	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04260 AT4G22140 AT4G22140 AT4G22140
fragaria_vesca	FvH4_3g01411 FvH4_6g42580
malus_domestica	MD05G1352300.v1.1 MD09G1112400.v1.1 MD10G1326300.v1.1 MD11G1102600.v1.1 MD11G1102700.v1.1 MD17G1102500.v1.1
prunus_persica	Prupe.3G212300_v2.0.a1 Prupe.3G212300_v2.0.a1 Prupe.3G212300_v2.0.a1 Prupe.3G212300_v2.0.a1 Prupe.4G015400_v2.0.a1
pyrus_communis	pycom05g31920 pycom10g27630 pycom17g09690
rosa_chinensis	RchiOBHm_Chr2g0158431 RchiOBHm_Chr5g0002141
rosa_laevigata	RLG00000021087 RLG00000026695 RLG00000031000
rosa_multiflora	Rmu_sc0004855.1_g000006 Rmu_ssc0000001.1_g000006
rosa_roxburghii	Rroxscaffold_1G00024330 Rroxscaffold_1G00073770 Rroxscaffold_2G00091380
rosa_rugosa	Rorug02G0468700 Rorug02G0468800 Rorug02G0468900 Rorug04G0394600
rosa_samantha	Rh2AG534800 Rh2BG548200 Rh2CG518600 Rh2DG557800 Rh5AG016400 Rh5BG019900 Rh5CG017700 Rh5CG364100 Rh5CG364200 Rh5DG017900
rosa_wichuraiana	Rw2G044290 Rw5G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	53
AccII	CGCG	1 cut(s)	130
AccIII	TCCGGA	1 cut(s)	400
AciI	CCGC	2 cut(s)	94, 116
AcoI	YGGCCR	2 cut(s)	3, 95
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	2 cut(s)	188, 374
AgsI	TTSAA	1 cut(s)	316
AluBI	AGCT	4 cut(s)	74, 244, 331, 563
AluI	AGCT	4 cut(s)	74, 244, 331, 563
Alw21I	GWGCWC	1 cut(s)	540
Alw26I	GTCTC	1 cut(s)	72
Aor13HI	TCCGGA	1 cut(s)	400
AoxI	GGCC	3 cut(s)	3, 95, 194
ApeKI	GCWGC	1 cut(s)	380
AspLEI	GCGC	3 cut(s)	130, 219, 639
AspS9I	GGNCC	2 cut(s)	256, 628
AsuC2I	CCSGG	2 cut(s)	18, 446
AsuHPI	GGTGA	2 cut(s)	79, 184
AvaII	GGWCC	2 cut(s)	256, 628
AxyI	CCTNAGG	1 cut(s)	198
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	53
BarI	GAAGNNNNNNTAC	2 cut(s)	104, 136
Bbv12I	GWGCWC	1 cut(s)	540
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	367
BceAI	ACGGC	2 cut(s)	82, 421
BcnI	CCSGG	2 cut(s)	18, 446
BcoDI	GTCTC	1 cut(s)	72
BfmI	CTRYAG	2 cut(s)	190, 361
BfoI	RGCGCY	1 cut(s)	640
BisI	GCNGC	3 cut(s)	95, 116, 381
BlsI	GCNGC	3 cut(s)	96, 117, 382
Bme1390I	CCNGG	2 cut(s)	18, 446
Bme18I	GGWCC	2 cut(s)	256, 628
BmgT120I	GGNCC	2 cut(s)	256, 628
BmiI	GGNNCC	2 cut(s)	55, 630
BmrFI	CCNGG	2 cut(s)	18, 446
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	3 cut(s)	81, 423, 611
BmuI	ACTGGG	1 cut(s)	396
BpmI	CTGGAG	2 cut(s)	96, 554
Bpu10I	CCTNAGC	2 cut(s)	348, 633
BpuMI	CCSGG	2 cut(s)	18, 446
BsaAI	YACGTR	1 cut(s)	124
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	168, 229
BsaWI	WCCGGW	1 cut(s)	400
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bse1I	ACTGG	2 cut(s)	391, 537
Bse21I	CCTNAGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	169
BseAI	TCCGGA	1 cut(s)	400
BseDI	CCNNGG	2 cut(s)	168, 229
BseGI	GGATG	4 cut(s)	109, 454, 490, 577
BseMI	GCAATG	1 cut(s)	169
BseMII	CTCAG	3 cut(s)	189, 339, 576
BseNI	ACTGG	2 cut(s)	391, 537
BseRI	GAGGAG	2 cut(s)	215, 485
BseX3I	CGGCCG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	367
BsgI	GTGCAG	1 cut(s)	482
Bsh1236I	CGCG	1 cut(s)	130
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	3 cut(s)	5, 97, 196
BshNI	GGYRCC	1 cut(s)	53
BsiEI	CGRYCG	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	540
BsiSI	CCGG	3 cut(s)	18, 401, 446
BsmAI	GTCTC	1 cut(s)	72
BsnI	GGCC	3 cut(s)	5, 97, 196
Bsp1286I	GDGCHC	1 cut(s)	540
Bsp13I	TCCGGA	1 cut(s)	400
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	2 cut(s)	94, 116
BspANI	GGCC	3 cut(s)	5, 97, 196
BspCNI	CTCAG	3 cut(s)	190, 340, 577
BspEI	TCCGGA	1 cut(s)	400
BspFNI	CGCG	1 cut(s)	130
BspLI	GGNNCC	2 cut(s)	55, 630
BspT107I	GGYRCC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	169
BsrI	ACTGG	2 cut(s)	391, 537
BssECI	CCNNGG	2 cut(s)	168, 229
BssNI	GRCGYC	1 cut(s)	36
BssT1I	CCWWGG	2 cut(s)	168, 229
Bst4CI	ACNGT	2 cut(s)	83, 362
BstACI	GRCGYC	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstBAI	YACGTR	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	221
BstDEI	CTNAG	4 cut(s)	198, 348, 585, 633
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	4 cut(s)	109, 454, 490, 577
BstFNI	CGCG	1 cut(s)	130
BstH2I	RGCGCY	1 cut(s)	640
BstHHI	GCGC	3 cut(s)	130, 219, 639
BstMAI	GTCTC	1 cut(s)	72
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 389, 608
BstNSI	RCATGY	1 cut(s)	501
BstSCI	CCNGG	2 cut(s)	16, 444
BstSFI	CTRYAG	2 cut(s)	190, 361
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	367
BstXI	CCANNNNNNTGG	2 cut(s)	64, 532
BstZI	CGGCCG	1 cut(s)	95
Bsu36I	CCTNAGG	1 cut(s)	198
BsuRI	GGCC	3 cut(s)	5, 97, 196
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	4 cut(s)	109, 454, 490, 577
BtsI	GCAGTG	1 cut(s)	470
BtsIMutI	CAGTG	1 cut(s)	470
Cac8I	GCNNGC	1 cut(s)	221
CfoI	GCGC	3 cut(s)	130, 219, 639
Cfr13I	GGNCC	2 cut(s)	256, 628
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	2 cut(s)	187, 373
CviAII	CATG	3 cut(s)	230, 457, 498
CviQI	GTAC	2 cut(s)	187, 373
DdeI	CTNAG	4 cut(s)	198, 348, 585, 633
EaeI	YGGCCR	2 cut(s)	3, 95
EagI	CGGCCG	1 cut(s)	95
EclXI	CGGCCG	1 cut(s)	95
Eco130I	CCWWGG	2 cut(s)	168, 229
Eco147I	AGGCCT	1 cut(s)	196
Eco47I	GGWCC	2 cut(s)	256, 628
Eco52I	CGGCCG	1 cut(s)	95
Eco81I	CCTNAGG	1 cut(s)	198
EcoT14I	CCWWGG	2 cut(s)	168, 229
ErhI	CCWWGG	2 cut(s)	168, 229
FaeI	CATG	3 cut(s)	233, 460, 501
FaiI	YATR	9 cut(s)	231, 269, 441, 458, 499, 543, 545, 547, 595
FatI	CATG	3 cut(s)	229, 456, 497
Fnu4HI	GCNGC	3 cut(s)	95, 116, 381
FokI	GGATG	4 cut(s)	116, 461, 477, 584
Fsp4HI	GCNGC	3 cut(s)	95, 116, 381
GlaI	GCGC	3 cut(s)	129, 218, 638
GluI	GCNGC	3 cut(s)	95, 116, 381
GsuI	CTGGAG	2 cut(s)	96, 554
HaeII	RGCGCY	1 cut(s)	640
HaeIII	GGCC	3 cut(s)	5, 97, 196
HapII	CCGG	3 cut(s)	18, 401, 446
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	3 cut(s)	130, 219, 639
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	3 cut(s)	233, 460, 501
Hin6I	GCGC	3 cut(s)	128, 217, 637
HinP1I	GCGC	3 cut(s)	128, 217, 637
HinfI	GANTC	2 cut(s)	132, 203
HpaII	CCGG	3 cut(s)	18, 401, 446
HphI	GGTGA	2 cut(s)	79, 184
Hpy166II	GTNNAC	3 cut(s)	307, 505, 628
Hpy188I	TCNGA	4 cut(s)	50, 103, 256, 553
Hpy188III	TCNNGA	3 cut(s)	136, 316, 401
Hpy8I	GTNNAC	3 cut(s)	307, 505, 628
Hpy99I	CGWCG	2 cut(s)	38, 103
HpyCH4III	ACNGT	2 cut(s)	83, 362
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	5 cut(s)	271, 423, 463, 477, 611
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 389, 608
HpyF3I	CTNAG	4 cut(s)	198, 348, 585, 633
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	3 cut(s)	233, 460, 501
HspAI	GCGC	3 cut(s)	128, 217, 637
Kpn2I	TCCGGA	1 cut(s)	400
LmnI	GCTCC	1 cut(s)	535
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	3 cut(s)	81, 423, 611
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	149
MboII	GAAGA	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	540
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	2 cut(s)	81, 234
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	400
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	563
MspI	CCGG	3 cut(s)	18, 401, 446
MspR9I	CCNGG	2 cut(s)	18, 446
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	3 cut(s)	94, 389, 608
NciI	CCSGG	2 cut(s)	18, 446
NcoI	CCATGG	1 cut(s)	229
NlaIII	CATG	3 cut(s)	233, 460, 501
NlaIV	GGNNCC	2 cut(s)	55, 630
NmuCI	GTSAC	1 cut(s)	149
NspI	RCATGY	1 cut(s)	501
PceI	AGGCCT	1 cut(s)	196
PfeI	GAWTC	1 cut(s)	132
PkrI	GCNGC	3 cut(s)	96, 117, 382
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Ppu21I	YACGTR	1 cut(s)	124
PspN4I	GGNNCC	2 cut(s)	55, 630
PspPI	GGNCC	2 cut(s)	256, 628
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	2 cut(s)	188, 374
RsaNI	GTAC	2 cut(s)	187, 373
SatI	GCNGC	3 cut(s)	95, 116, 381
Sau96I	GGNCC	2 cut(s)	256, 628
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	2 cut(s)	18, 446
SduI	GDGCHC	1 cut(s)	540
SfaNI	GCATC	3 cut(s)	81, 423, 611
SfcI	CTRYAG	2 cut(s)	190, 361
SinI	GGWCC	2 cut(s)	256, 628
SseBI	AGGCCT	1 cut(s)	196
SsiI	CCGC	2 cut(s)	94, 116
StuI	AGGCCT	1 cut(s)	196
StyD4I	CCNGG	2 cut(s)	16, 444
StyI	CCWWGG	2 cut(s)	168, 229
TaaI	ACNGT	2 cut(s)	83, 362
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	3 cut(s)	33, 135, 236
TatI	WGTACW	1 cut(s)	372
TauI	GCSGC	2 cut(s)	97, 118
TfiI	GAWTC	1 cut(s)	132
TscAI	CASTG	1 cut(s)	470
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	2 cut(s)	479, 531
TspRI	CASTG	1 cut(s)	470
VpaK11BI	GGWCC	2 cut(s)	256, 628
XceI	RCATGY	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.