Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001923

Physical Location & Seq

Genomic Coordinates Reverse (-)

13093869 .. 13096049

Gene Structure 2181 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G25700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCGGCAGGACTCTCAACCGCCGTTACATTCAAACCACTCCACCGCTCTTTCTCCTCCTCCTCTACCGATTTCCGACTCCGCCTCCCGAAATCCTTATCCGGATTCTCTCCGTCTCTTCGATTTAAACGCTTTTCTGTCTGTTACGTCGTCGAAGAACGGAGACAGAATTCTCCGATTGAGAACGATGAGAGACCGGAGAGCACGAGCTCCACAAACGCTATAGACGCTGAGTATCTGGCGTTGCGTTTGGCGGAGAAATTGGAGAGGAAGAAATCGGAGAGGTCCACTTATCTAATCGCTGCTATGTTGTCGAGCTTTGGTATCACTTCTATGGCTGTTATGGCTGTTTACTACAGATTCTCTTGGCAAATGGAGGGAGGTGAGATCTCAATGTTGGAAATGTTTGGTACATTTGCTCTCTCTGTTGGTGCTGCTGTTGGTATGGAATTCTGGGCAAGATGGGCTCATAGAGCTCTGTGGCACGCTTCTCTATGGAATATGCATGAGTCACATCACAAACCAAGAGAAGGACCGTTTGAGCTAAACGATGTTTTTGCTATAGTGAACGCTGGTCCAGCGATTGGTCTCCTCTCTTATGGATTCTTCAATAAAGGACTCGTTCCTGGTCTCTGCTTTGGCGCCGGGTTAGGCATAACGGTGTTTGGAATCGCCTACATGTTTGTCCACGATGGTCTCGTGCACAAGCGTTTCCCTGTAGGTCCCATCGCCGACGTCCCTTACCTCCGAAAGGTCGCCGCCGCTCACCAGCTACATCACACAGACAAGTTCAATGGTGTACCATATGGACTGTTTCTTGGACCCAAGGAATTGGAAGAAGTTGGAGGAAATGAAGAGTTAGATAAGGAGATTAGTCGGAGAATCAAATCATACAAAAAGGCCTCGGGCTCCGGGTCGAGTTCGAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046148 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

310

Amino Acids

34.36

Weight (kDa)

9.1

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	145 - 195	1.1e-06	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25700 AT4G25700 AT4G25700 AT5G52570 AT5G52570
fragaria_vesca	FvH4_5g03020 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220
malus_domestica	MD01G1208300.v1.1 MD06G1089200.v1.1 MD07G1278900.v1.1
prunus_persica	Prupe.1G173800_v2.0.a1 Prupe.2G300800_v2.0.a1 Prupe.5G105100_v2.0.a1 Prupe.5G133900_v2.0.a1 Prupe.5G201800_v2.0.a1 Prupe.6G049800_v2.0.a1 Prupe.7G160800_v2.0.a1 Prupe.7G160800_v2.0.a1
pyrus_communis	pycom01g21890 pycom06g08510 pycom07g25370
rosa_chinensis	RchiOBHm_Chr1g0378281 RchiOBHm_Chr7g0196841
rosa_laevigata	RLG00000003985 RLG00000026443
rosa_multiflora	Rmu_sc0001083.1_g000021 Rmu_sc0013545.1_g000006
rosa_roxburghii	Rroxscaffold_3G00258920 Rroxscaffold_4G00280530
rosa_rugosa	Rorug01G0407900 Rorug07G0036200 Rorug07G0036200
rosa_samantha	Rh1AG421600 Rh1BG387000 Rh1CG400500 Rh1DG418200 Rh7AG160500 Rh7BG162600 Rh7CG168900 Rh7DG162000
rosa_wichuraiana	Rw1G037580 Rw7G014030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	738
AccB1I	GGYRCC	1 cut(s)	641
AccB7I	CCANNNNNTGG	1 cut(s)	584
AccBSI	CCGCTC	2 cut(s)	48, 764
AccIII	TCCGGA	1 cut(s)	101
AciI	CCGC	7 cut(s)	5, 21, 46, 82, 254, 759, 762
AcsI	RAATTY	2 cut(s)	169, 449
AcyI	GRCGYC	2 cut(s)	642, 735
AfaI	GTAC	2 cut(s)	412, 801
AfiI	CCNNNNNNNGG	3 cut(s)	530, 584, 751
AflIII	ACRYGT	1 cut(s)	678
AgsI	TTSAA	3 cut(s)	34, 610, 793
AjnI	CCWGG	1 cut(s)	625
AluBI	AGCT	5 cut(s)	210, 318, 476, 544, 772
AluI	AGCT	5 cut(s)	210, 318, 476, 544, 772
Alw21I	GWGCWC	4 cut(s)	206, 212, 478, 705
Alw26I	GTCTC	6 cut(s)	120, 157, 187, 593, 635, 701
Alw44I	GTGCAC	1 cut(s)	701
Ama87I	CYCGRG	1 cut(s)	904
Aor13HI	TCCGGA	1 cut(s)	101
AoxI	GGCC	1 cut(s)	900
ApaLI	GTGCAC	1 cut(s)	701
ApeKI	GCWGC	2 cut(s)	302, 434
ApoI	RAATTY	2 cut(s)	169, 449
AspLEI	GCGC	1 cut(s)	644
AspS9I	GGNCC	5 cut(s)	285, 533, 575, 722, 821
AsuC2I	CCSGG	2 cut(s)	646, 913
AsuHPI	GGTGA	2 cut(s)	395, 758
AvaI	CYCGRG	1 cut(s)	904
AvaII	GGWCC	5 cut(s)	285, 533, 575, 722, 821
BaeGI	GKGCMC	1 cut(s)	705
BanI	GGYRCC	1 cut(s)	641
BanII	GRGCYC	4 cut(s)	212, 469, 478, 911
BauI	CACGAG	2 cut(s)	205, 698
Bbv12I	GWGCWC	4 cut(s)	206, 212, 478, 705
BbvI	GCAGC	2 cut(s)	289, 421
BccI	CCATC	3 cut(s)	456, 686, 734
BceAI	ACGGC	1 cut(s)	8
BcgI	CGANNNNNNTGC	2 cut(s)	539, 573
BciT130I	CCWGG	1 cut(s)	627
BcnI	CCSGG	2 cut(s)	646, 913
BcoDI	GTCTC	6 cut(s)	120, 157, 187, 593, 635, 701
BfmI	CTRYAG	4 cut(s)	222, 355, 561, 717
BfoI	RGCGCY	1 cut(s)	645
BglII	AGATCT	1 cut(s)	387
BisI	GCNGC	5 cut(s)	6, 303, 435, 759, 762
BlsI	GCNGC	5 cut(s)	7, 304, 436, 760, 763
Bme1390I	CCNGG	3 cut(s)	627, 646, 913
Bme18I	GGWCC	5 cut(s)	285, 533, 575, 722, 821
BmeT110I	CYCGRG	1 cut(s)	904
BmgT120I	GGNCC	5 cut(s)	285, 533, 575, 722, 821
BmiI	GGNNCC	4 cut(s)	643, 724, 823, 910
BmrFI	CCNGG	3 cut(s)	627, 646, 913
BpuMI	CCSGG	2 cut(s)	646, 913
BsaHI	GRCGYC	2 cut(s)	642, 735
BsaI	GGTCTC	4 cut(s)	187, 593, 635, 701
BsaJI	CCNNGG	2 cut(s)	825, 903
BsaWI	WCCGGW	2 cut(s)	101, 196
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	3 cut(s)	530, 584, 751
BseAI	TCCGGA	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	627
BseDI	CCNNGG	2 cut(s)	825, 903
BseLI	CCNNNNNNNGG	3 cut(s)	530, 584, 751
BseMII	CTCAG	1 cut(s)	222
BseRI	GAGGAG	4 cut(s)	46, 49, 52, 581
BseSI	GKGCMC	1 cut(s)	705
BseXI	GCAGC	2 cut(s)	289, 421
BshFI	GGCC	1 cut(s)	902
BshNI	GGYRCC	1 cut(s)	641
BsiHKAI	GWGCWC	4 cut(s)	206, 212, 478, 705
BsiHKCI	CYCGRG	1 cut(s)	904
BsiSI	CCGG	4 cut(s)	102, 197, 645, 912
BslFI	GGGAC	2 cut(s)	708, 722
BslI	CCNNNNNNNGG	3 cut(s)	530, 584, 751
BsmAI	GTCTC	6 cut(s)	120, 157, 187, 593, 635, 701
BsmBI	CGTCTC	1 cut(s)	120
BsmFI	GGGAC	2 cut(s)	708, 722
BsnI	GGCC	1 cut(s)	902
Bso31I	GGTCTC	4 cut(s)	187, 593, 635, 701
BsoBI	CYCGRG	1 cut(s)	904
Bsp1286I	GDGCHC	6 cut(s)	206, 212, 469, 478, 705, 911
Bsp13I	TCCGGA	1 cut(s)	101
Bsp143I	GATC	1 cut(s)	387
BspACI	CCGC	7 cut(s)	5, 21, 46, 82, 254, 759, 762
BspANI	GGCC	1 cut(s)	902
BspCNI	CTCAG	1 cut(s)	223
BspEI	TCCGGA	1 cut(s)	101
BspLI	GGNNCC	4 cut(s)	643, 724, 823, 910
BspT107I	GGYRCC	1 cut(s)	641
BspTNI	GGTCTC	4 cut(s)	187, 593, 635, 701
BsrBI	CCGCTC	2 cut(s)	48, 764
BssECI	CCNNGG	2 cut(s)	825, 903
BssMI	GATC	1 cut(s)	387
BssNI	GRCGYC	2 cut(s)	642, 735
BssSI	CACGAG	2 cut(s)	205, 698
BssT1I	CCWWGG	1 cut(s)	825
Bst2BI	CACGAG	2 cut(s)	205, 698
Bst2UI	CCWGG	1 cut(s)	627
Bst4CI	ACNGT	3 cut(s)	537, 661, 813
Bst6I	CTCTTC	2 cut(s)	123, 849
BstACI	GRCGYC	2 cut(s)	642, 735
BstC8I	GCNNGC	1 cut(s)	486
BstDEI	CTNAG	1 cut(s)	231
BstENI	CCTNNNNNAGG	1 cut(s)	749
BstH2I	RGCGCY	1 cut(s)	645
BstHHI	GCGC	1 cut(s)	644
BstKTI	GATC	1 cut(s)	390
BstMAI	GTCTC	6 cut(s)	120, 157, 187, 593, 635, 701
BstMBI	GATC	1 cut(s)	387
BstMWI	GCNNNNNNNGC	5 cut(s)	227, 344, 464, 473, 578
BstNI	CCWGG	1 cut(s)	627
BstNSI	RCATGY	1 cut(s)	682
BstSCI	CCNGG	3 cut(s)	625, 644, 911
BstSFI	CTRYAG	4 cut(s)	222, 355, 561, 717
BstSLI	GKGCMC	1 cut(s)	705
BstV1I	GCAGC	2 cut(s)	289, 421
BstX2I	RGATCY	1 cut(s)	387
BstXI	CCANNNNNNTGG	1 cut(s)	832
BstYI	RGATCY	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	902
BtgZI	GCGATG	1 cut(s)	712
Cac8I	GCNNGC	1 cut(s)	486
CfoI	GCGC	1 cut(s)	644
Cfr13I	GGNCC	5 cut(s)	285, 533, 575, 722, 821
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	2 cut(s)	411, 800
CviAII	CATG	2 cut(s)	506, 679
CviQI	GTAC	2 cut(s)	411, 800
DdeI	CTNAG	1 cut(s)	231
DinI	GGCGCC	1 cut(s)	643
DpnI	GATC	1 cut(s)	389
DpnII	GATC	1 cut(s)	387
DraI	TTTAAA	1 cut(s)	127
Eam1104I	CTCTTC	2 cut(s)	123, 849
EarI	CTCTTC	2 cut(s)	123, 849
EciI	GGCGGA	2 cut(s)	71, 269
Ecl136II	GAGCTC	2 cut(s)	210, 476
Eco130I	CCWWGG	1 cut(s)	825
Eco147I	AGGCCT	1 cut(s)	902
Eco24I	GRGCYC	4 cut(s)	212, 469, 478, 911
Eco31I	GGTCTC	4 cut(s)	187, 593, 635, 701
Eco47I	GGWCC	5 cut(s)	285, 533, 575, 722, 821
Eco53kI	GAGCTC	2 cut(s)	210, 476
Eco88I	CYCGRG	1 cut(s)	904
EcoICRI	GAGCTC	2 cut(s)	210, 476
EcoNI	CCTNNNNNAGG	1 cut(s)	749
EcoO109I	RGGNCCY	1 cut(s)	722
EcoRI	GAATTC	2 cut(s)	169, 449
EcoRII	CCWGG	1 cut(s)	625
EcoT14I	CCWWGG	1 cut(s)	825
EcoT22I	ATGCAT	1 cut(s)	507
EcoT38I	GRGCYC	4 cut(s)	212, 469, 478, 911
EgeI	GGCGCC	1 cut(s)	643
EheI	GGCGCC	1 cut(s)	643
ErhI	CCWWGG	1 cut(s)	825
Esp3I	CGTCTC	1 cut(s)	120
FaeI	CATG	2 cut(s)	509, 682
FaqI	GGGAC	2 cut(s)	708, 722
FatI	CATG	2 cut(s)	505, 678
FauNDI	CATATG	1 cut(s)	805
Fnu4HI	GCNGC	5 cut(s)	6, 303, 435, 759, 762
FriOI	GRGCYC	4 cut(s)	212, 469, 478, 911
Fsp4HI	GCNGC	5 cut(s)	6, 303, 435, 759, 762
GlaI	GCGC	1 cut(s)	643
GluI	GCNGC	5 cut(s)	6, 303, 435, 759, 762
HaeII	RGCGCY	1 cut(s)	645
HaeIII	GGCC	1 cut(s)	902
HapII	CCGG	4 cut(s)	102, 197, 645, 912
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	1 cut(s)	644
Hin1I	GRCGYC	2 cut(s)	642, 735
Hin1II	CATG	2 cut(s)	509, 682
Hin6I	GCGC	1 cut(s)	642
HinP1I	GCGC	1 cut(s)	642
HinfI	GANTC	9 cut(s)	12, 78, 105, 360, 509, 603, 618, 669, 882
HpaII	CCGG	4 cut(s)	102, 197, 645, 912
HphI	GGTGA	2 cut(s)	395, 758
Hpy166II	GTNNAC	6 cut(s)	288, 352, 568, 688, 703, 800
Hpy188I	TCNGA	5 cut(s)	77, 177, 280, 749, 879
Hpy188III	TCNNGA	3 cut(s)	88, 102, 930
Hpy8I	GTNNAC	6 cut(s)	288, 352, 568, 688, 703, 800
Hpy99I	CGWCG	3 cut(s)	152, 155, 737
HpyAV	CCTTC	1 cut(s)	524
HpyCH4III	ACNGT	3 cut(s)	537, 661, 813
HpyCH4IV	ACGT	2 cut(s)	147, 735
HpyCH4V	TGCA	2 cut(s)	505, 703
HpyF10VI	GCNNNNNNNGC	5 cut(s)	227, 344, 464, 473, 578
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	2 cut(s)	147, 735
Hsp92I	GRCGYC	2 cut(s)	642, 735
Hsp92II	CATG	2 cut(s)	509, 682
HspAI	GCGC	1 cut(s)	642
KasI	GGCGCC	1 cut(s)	641
Kpn2I	TCCGGA	1 cut(s)	101
Kzo9I	GATC	1 cut(s)	387
LmnI	GCTCC	2 cut(s)	215, 914
Lsp1109I	GCAGC	2 cut(s)	289, 421
MaeII	ACGT	2 cut(s)	147, 735
MaeIII	GTNAC	3 cut(s)	25, 143, 510
MalI	GATC	1 cut(s)	389
MbiI	CCGCTC	2 cut(s)	48, 764
MboI	GATC	1 cut(s)	387
MboII	GAAGA	6 cut(s)	110, 167, 283, 598, 848, 866
MflI	RGATCY	1 cut(s)	387
MhlI	GDGCHC	6 cut(s)	206, 212, 469, 478, 705, 911
MluCI	AATT	4 cut(s)	169, 260, 449, 830
Mly113I	GGCGCC	1 cut(s)	642
MlyI	GAGTC	4 cut(s)	6, 72, 518, 612
MmeI	TCCRAC	4 cut(s)	100, 378, 823, 857
Mph1103I	ATGCAT	1 cut(s)	507
MroI	TCCGGA	1 cut(s)	101
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	2 cut(s)	332, 659
MspI	CCGG	4 cut(s)	102, 197, 645, 912
MspR9I	CCNGG	3 cut(s)	627, 646, 913
MvaI	CCWGG	1 cut(s)	627
MwoI	GCNNNNNNNGC	5 cut(s)	227, 344, 464, 473, 578
NarI	GGCGCC	1 cut(s)	642
NciI	CCSGG	2 cut(s)	646, 913
NdeI	CATATG	1 cut(s)	805
NdeII	GATC	1 cut(s)	387
NlaIII	CATG	2 cut(s)	509, 682
NlaIV	GGNNCC	4 cut(s)	643, 724, 823, 910
NmuCI	GTSAC	1 cut(s)	510
NsiI	ATGCAT	1 cut(s)	507
NspI	RCATGY	1 cut(s)	682
PceI	AGGCCT	1 cut(s)	902
PciI	ACATGT	1 cut(s)	678
PcsI	WCGNNNNNNNCGW	1 cut(s)	696
PfeI	GAWTC	5 cut(s)	105, 360, 603, 669, 882
PflMI	CCANNNNNTGG	1 cut(s)	584
PkrI	GCNGC	5 cut(s)	7, 304, 436, 760, 763
PleI	GAGTC	4 cut(s)	6, 72, 517, 612
PluTI	GGCGCC	1 cut(s)	645
PpsI	GAGTC	4 cut(s)	6, 72, 517, 612
PpuMI	RGGWCCY	1 cut(s)	722
PscI	ACATGT	1 cut(s)	678
Psp124BI	GAGCTC	2 cut(s)	212, 478
Psp5II	RGGWCCY	1 cut(s)	722
Psp6I	CCWGG	1 cut(s)	625
PspGI	CCWGG	1 cut(s)	625
PspN4I	GGNNCC	4 cut(s)	643, 724, 823, 910
PspPI	GGNCC	5 cut(s)	285, 533, 575, 722, 821
PspPPI	RGGWCCY	1 cut(s)	722
PsuI	RGATCY	1 cut(s)	387
RsaI	GTAC	2 cut(s)	412, 801
RsaNI	GTAC	2 cut(s)	411, 800
RseI	CAYNNNNRTG	2 cut(s)	332, 659
SacI	GAGCTC	2 cut(s)	212, 478
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	5 cut(s)	6, 303, 435, 759, 762
Sau3AI	GATC	1 cut(s)	387
Sau96I	GGNCC	5 cut(s)	285, 533, 575, 722, 821
SchI	GAGTC	4 cut(s)	6, 72, 518, 612
ScrFI	CCNGG	3 cut(s)	627, 646, 913
SduI	GDGCHC	6 cut(s)	206, 212, 469, 478, 705, 911
SfcI	CTRYAG	4 cut(s)	222, 355, 561, 717
SfoI	GGCGCC	1 cut(s)	643
SinI	GGWCC	5 cut(s)	285, 533, 575, 722, 821
SmiMI	CAYNNNNRTG	2 cut(s)	332, 659
Sse9I	AATT	4 cut(s)	169, 260, 449, 830
SseBI	AGGCCT	1 cut(s)	902
SsiI	CCGC	7 cut(s)	5, 21, 46, 82, 254, 759, 762
SspDI	GGCGCC	1 cut(s)	641
SstI	GAGCTC	2 cut(s)	212, 478
StuI	AGGCCT	1 cut(s)	902
StyD4I	CCNGG	3 cut(s)	625, 644, 911
StyI	CCWWGG	1 cut(s)	825
TaaI	ACNGT	3 cut(s)	537, 661, 813
TaiI	ACGT	2 cut(s)	150, 738
TaqI	TCGA	5 cut(s)	121, 153, 314, 917, 923
TasI	AATT	4 cut(s)	169, 260, 449, 830
TauI	GCSGC	3 cut(s)	8, 761, 764
TfiI	GAWTC	5 cut(s)	105, 360, 603, 669, 882
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TseFI	GTSAC	1 cut(s)	510
TseI	GCWGC	2 cut(s)	302, 434
Tsp45I	GTSAC	1 cut(s)	510
TspDTI	ATGAA	1 cut(s)	867
TspGWI	ACGGA	2 cut(s)	102, 175
Van91I	CCANNNNNTGG	1 cut(s)	584
VneI	GTGCAC	1 cut(s)	701
VpaK11BI	GGWCC	5 cut(s)	285, 533, 575, 722, 821
XagI	CCTNNNNNAGG	1 cut(s)	749
XapI	RAATTY	2 cut(s)	169, 449
XceI	RCATGY	1 cut(s)	682
ZraI	GACGTC	1 cut(s)	736
Zsp2I	ATGCAT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.