Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001923

Physical Location & Seq

Genomic Coordinates Reverse (-)

21334793 .. 21337126

Gene Structure 2334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCAGCAGGACTATCAACAATCGCCGTAACACTCAAACCACTCAACCGCTCTTCTTTCTCCGCAAACCACCCTATATCCACCGCAGTTTTCCCTCCATCTCTAAGATTCAACGGCTTCCGACGTCGAAAGATTCTCACCGTTTGTTTCGTCGTGGAAGAACGGAAACAAAGCTCTCCCATGGACGATGACAACAAACCAGAAAGCACGACAAGCTCTTCTGAGATCTTGATGACGTCGCGGCTTCTCAAGAAAGCGGAGAAGAAGAAATCAGAGAGGTTCACTTATTTAATAGCAGCTGTGATGTCGAGCTTTGGTATCACTTCTATGGCTATAATGGCTGTTTATTACCGATTTTCTTGGCAAATGAAGGGAGGTGAAGTGTCTGTGTTAGAGATGTTTGGTACATTTGCTCTTTCCGTTGGTGCTGCCGTTGGGATGGAGTTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGATTCTTTATGGAACATGCATGAGTCACATCACAAACCAAGAGAAGGAGCGTTTGAGTTAAACGATGTGTTTGCTATAACAAACGCGGTTCCTGCGATTGGTCTACTCTATTATGGATTCTTGAATAAAGGACTTGTTCCTGGTCTCTGCTTCGGTGCCGGACTGGGAATAACGATGTTTGGAATGGCTTACATGTTCGTTCACGATGGACTTGTGCACAAGAGATTCCCTGTAGGTCCCATTGCCAACGTTCCTTACCTTCGAAAGGTCGCCGCCGCTCACCAGCTACACCACACAGACAAATTCAAAGGTGTACCATATGGGCTGTTTCTTGGACCAAAGGAAGTAGAAGAAGTGGGAGGAAAAGAAGAGTTGGAGAAAGAGATAAGCCGGAGAATCAAATTATACAACAAGGGTTCTTCTACCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046148 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

303

Amino Acids

33.78

Weight (kDa)

9.59

Isoelectric Point (pI)

48.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25700 AT4G25700 AT4G25700 AT5G52570 AT5G52570
fragaria_vesca	FvH4_5g03020 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220
malus_domestica	MD01G1208300.v1.1 MD06G1089200.v1.1 MD07G1278900.v1.1
prunus_persica	Prupe.1G173800_v2.0.a1 Prupe.2G300800_v2.0.a1 Prupe.5G105100_v2.0.a1 Prupe.5G133900_v2.0.a1 Prupe.5G201800_v2.0.a1 Prupe.6G049800_v2.0.a1 Prupe.7G160800_v2.0.a1 Prupe.7G160800_v2.0.a1
pyrus_communis	pycom01g21890 pycom06g08510 pycom07g25370
rosa_chinensis	RchiOBHm_Chr1g0378281 RchiOBHm_Chr7g0196841
rosa_laevigata	RLG00000003985 RLG00000026443
rosa_multiflora	Rmu_sc0001083.1_g000021 Rmu_sc0013545.1_g000006
rosa_roxburghii	Rroxscaffold_3G00258920 Rroxscaffold_4G00280530
rosa_rugosa	Rorug01G0407900 Rorug07G0036200 Rorug07G0036200
rosa_samantha	Rh1AG421600 Rh1BG387000 Rh1CG400500 Rh1DG418200 Rh7AG160500 Rh7BG162600 Rh7CG168900 Rh7DG162000
rosa_wichuraiana	Rw1G037580 Rw7G014030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	127, 239
AccB1I	GGYRCC	1 cut(s)	635
AccBSI	CCGCTC	2 cut(s)	51, 758
AccI	GTMKAC	1 cut(s)	583
AccII	CGCG	2 cut(s)	241, 566
AciI	CCGC	8 cut(s)	49, 63, 84, 241, 257, 566, 753, 756
AclI	AACGTT	1 cut(s)	729
AcsI	RAATTY	1 cut(s)	782
AcyI	GRCGYC	2 cut(s)	124, 236
AfaI	GTAC	2 cut(s)	406, 795
AfiI	CCNNNNNNNGG	3 cut(s)	524, 578, 745
AflIII	ACRYGT	1 cut(s)	672
AgsI	TTSAA	3 cut(s)	112, 604, 787
AjnI	CCWGG	1 cut(s)	619
AluBI	AGCT	6 cut(s)	174, 216, 299, 312, 470, 766
AluI	AGCT	6 cut(s)	174, 216, 299, 312, 470, 766
Alw21I	GWGCWC	2 cut(s)	472, 699
Alw26I	GTCTC	1 cut(s)	629
Alw44I	GTGCAC	1 cut(s)	695
ApaLI	GTGCAC	1 cut(s)	695
ApeKI	GCWGC	3 cut(s)	5, 296, 428
ApoI	RAATTY	1 cut(s)	782
AspS9I	GGNCC	2 cut(s)	716, 815
AsuHPI	GGTGA	3 cut(s)	130, 389, 752
AsuII	TTCGAA	1 cut(s)	742
AvaII	GGWCC	2 cut(s)	716, 815
BaeGI	GKGCMC	1 cut(s)	699
BanI	GGYRCC	1 cut(s)	635
BanII	GRGCYC	2 cut(s)	463, 472
Bbv12I	GWGCWC	2 cut(s)	472, 699
BbvI	GCAGC	3 cut(s)	17, 308, 415
BccI	CCATC	4 cut(s)	106, 433, 450, 680
BceAI	ACGGC	3 cut(s)	11, 130, 416
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BciT130I	CCWGG	1 cut(s)	621
BcoDI	GTCTC	1 cut(s)	629
BfmI	CTRYAG	1 cut(s)	711
BglII	AGATCT	1 cut(s)	225
BisI	GCNGC	6 cut(s)	6, 242, 297, 429, 753, 756
BlsI	GCNGC	6 cut(s)	7, 243, 298, 430, 754, 757
Bme1390I	CCNGG	1 cut(s)	621
Bme18I	GGWCC	2 cut(s)	716, 815
BmgT120I	GGNCC	2 cut(s)	716, 815
BmiI	GGNNCC	3 cut(s)	570, 637, 718
BmrFI	CCNGG	1 cut(s)	621
BmrI	ACTGGG	1 cut(s)	653
BmuI	ACTGGG	1 cut(s)	653
Bpu14I	TTCGAA	1 cut(s)	742
BpuEI	CTTGAG	1 cut(s)	233
BsaHI	GRCGYC	2 cut(s)	124, 236
BsaI	GGTCTC	1 cut(s)	629
BsaJI	CCNNGG	1 cut(s)	180
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	3 cut(s)	524, 578, 745
Bse1I	ACTGG	1 cut(s)	648
Bse3DI	GCAATG	1 cut(s)	720
BseBI	CCWGG	1 cut(s)	621
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	1 cut(s)	444
BseLI	CCNNNNNNNGG	3 cut(s)	524, 578, 745
BseMI	GCAATG	1 cut(s)	720
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	648
BseSI	GKGCMC	1 cut(s)	699
BseXI	GCAGC	3 cut(s)	17, 308, 415
Bsh1236I	CGCG	2 cut(s)	241, 566
BshNI	GGYRCC	1 cut(s)	635
BsiHKAI	GWGCWC	2 cut(s)	472, 699
BsiSI	CCGG	2 cut(s)	639, 871
BslFI	GGGAC	1 cut(s)	702
BslI	CCNNNNNNNGG	3 cut(s)	524, 578, 745
BsmAI	GTCTC	1 cut(s)	629
BsmFI	GGGAC	1 cut(s)	702
Bso31I	GGTCTC	1 cut(s)	629
Bsp119I	TTCGAA	1 cut(s)	742
Bsp1286I	GDGCHC	3 cut(s)	463, 472, 699
Bsp143I	GATC	1 cut(s)	225
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	8 cut(s)	49, 63, 84, 241, 257, 566, 753, 756
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	2 cut(s)	241, 566
BspLI	GGNNCC	3 cut(s)	570, 637, 718
BspQI	GCTCTTC	2 cut(s)	58, 223
BspT104I	TTCGAA	1 cut(s)	742
BspT107I	GGYRCC	1 cut(s)	635
BspTNI	GGTCTC	1 cut(s)	629
BsrBI	CCGCTC	2 cut(s)	51, 758
BsrDI	GCAATG	1 cut(s)	720
BsrI	ACTGG	1 cut(s)	648
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	1 cut(s)	225
BssNI	GRCGYC	2 cut(s)	124, 236
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	621
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	3 cut(s)	58, 223, 843
BstACI	GRCGYC	2 cut(s)	124, 236
BstBI	TTCGAA	1 cut(s)	742
BstDEI	CTNAG	2 cut(s)	104, 222
BstDSI	CCRYGG	1 cut(s)	180
BstENI	CCTNNNNNAGG	1 cut(s)	743
BstF5I	GGATG	1 cut(s)	444
BstFNI	CGCG	2 cut(s)	241, 566
BstKTI	GATC	1 cut(s)	228
BstMAI	GTCTC	1 cut(s)	629
BstMBI	GATC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	5 cut(s)	213, 338, 458, 467, 572
BstNI	CCWGG	1 cut(s)	621
BstNSI	RCATGY	2 cut(s)	499, 676
BstSCI	CCNGG	1 cut(s)	619
BstSFI	CTRYAG	1 cut(s)	711
BstSLI	GKGCMC	1 cut(s)	699
BstUI	CGCG	2 cut(s)	241, 566
BstV1I	GCAGC	3 cut(s)	17, 308, 415
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	444
Cfr13I	GGNCC	2 cut(s)	716, 815
Csp6I	GTAC	2 cut(s)	405, 794
CviAII	CATG	5 cut(s)	181, 479, 496, 500, 673
CviQI	GTAC	2 cut(s)	405, 794
DdeI	CTNAG	2 cut(s)	104, 222
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
Eam1104I	CTCTTC	3 cut(s)	58, 223, 843
EarI	CTCTTC	3 cut(s)	58, 223, 843
Ecl136II	GAGCTC	1 cut(s)	470
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	2 cut(s)	463, 472
Eco31I	GGTCTC	1 cut(s)	629
Eco47I	GGWCC	2 cut(s)	716, 815
Eco53kI	GAGCTC	1 cut(s)	470
EcoICRI	GAGCTC	1 cut(s)	470
EcoNI	CCTNNNNNAGG	1 cut(s)	743
EcoO109I	RGGNCCY	1 cut(s)	716
EcoRII	CCWGG	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	180
EcoT22I	ATGCAT	1 cut(s)	501
EcoT38I	GRGCYC	2 cut(s)	463, 472
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	5 cut(s)	184, 482, 499, 503, 676
FaqI	GGGAC	1 cut(s)	702
FatI	CATG	5 cut(s)	180, 478, 495, 499, 672
FauNDI	CATATG	1 cut(s)	799
FblI	GTMKAC	1 cut(s)	583
Fnu4HI	GCNGC	6 cut(s)	6, 242, 297, 429, 753, 756
FokI	GGATG	1 cut(s)	451
FriOI	GRGCYC	2 cut(s)	463, 472
Fsp4HI	GCNGC	6 cut(s)	6, 242, 297, 429, 753, 756
GluI	GCNGC	6 cut(s)	6, 242, 297, 429, 753, 756
HapII	CCGG	2 cut(s)	639, 871
Hin1I	GRCGYC	2 cut(s)	124, 236
Hin1II	CATG	5 cut(s)	184, 482, 499, 503, 676
HinfI	GANTC	7 cut(s)	108, 133, 482, 503, 597, 705, 876
HpaII	CCGG	2 cut(s)	639, 871
HphI	GGTGA	3 cut(s)	130, 389, 752
Hpy166II	GTNNAC	5 cut(s)	282, 584, 682, 697, 794
Hpy188I	TCNGA	3 cut(s)	122, 223, 274
Hpy188III	TCNNGA	4 cut(s)	229, 250, 601, 683
Hpy8I	GTNNAC	5 cut(s)	282, 584, 682, 697, 794
Hpy99I	CGWCG	4 cut(s)	126, 129, 155, 241
HpyAV	CCTTC	3 cut(s)	364, 518, 749
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	3 cut(s)	124, 236, 729
HpyCH4V	TGCA	2 cut(s)	499, 697
HpyF10VI	GCNNNNNNNGC	5 cut(s)	213, 338, 458, 467, 572
HpyF3I	CTNAG	2 cut(s)	104, 222
HpySE526I	ACGT	3 cut(s)	124, 236, 729
Hsp92I	GRCGYC	2 cut(s)	124, 236
Hsp92II	CATG	5 cut(s)	184, 482, 499, 503, 676
Kzo9I	GATC	1 cut(s)	225
LguI	GCTCTTC	2 cut(s)	58, 223
LmnI	GCTCC	1 cut(s)	527
LpnPI	CCDG	9 cut(s)	213, 585, 606, 629, 633, 652, 723, 776, 884
Lsp1109I	GCAGC	3 cut(s)	17, 308, 415
MaeII	ACGT	3 cut(s)	124, 236, 729
MaeIII	GTNAC	2 cut(s)	28, 504
MalI	GATC	1 cut(s)	227
MbiI	CCGCTC	2 cut(s)	51, 758
MboI	GATC	1 cut(s)	225
MboII	GAAGA	8 cut(s)	45, 170, 210, 274, 277, 842, 860, 891
MflI	RGATCY	1 cut(s)	225
MhlI	GDGCHC	3 cut(s)	463, 472, 699
MluCI	AATT	2 cut(s)	782, 881
MlyI	GAGTC	1 cut(s)	512
MmeI	TCCRAC	2 cut(s)	145, 834
MnlI	CCTC	4 cut(s)	105, 270, 368, 833
Mph1103I	ATGCAT	1 cut(s)	501
MseI	TTAA	3 cut(s)	290, 539, 910
MslI	CAYNNNNRTG	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	2 cut(s)	639, 871
MspR9I	CCNGG	1 cut(s)	621
MvaI	CCWGG	1 cut(s)	621
MvnI	CGCG	2 cut(s)	241, 566
MwoI	GCNNNNNNNGC	5 cut(s)	213, 338, 458, 467, 572
NcoI	CCATGG	1 cut(s)	180
NdeI	CATATG	1 cut(s)	799
NdeII	GATC	1 cut(s)	225
NlaIII	CATG	5 cut(s)	184, 482, 499, 503, 676
NlaIV	GGNNCC	3 cut(s)	570, 637, 718
NmuCI	GTSAC	1 cut(s)	504
NsiI	ATGCAT	1 cut(s)	501
NspI	RCATGY	2 cut(s)	499, 676
NspV	TTCGAA	1 cut(s)	742
PciI	ACATGT	1 cut(s)	672
PciSI	GCTCTTC	2 cut(s)	58, 223
PfeI	GAWTC	6 cut(s)	108, 133, 482, 597, 705, 876
PkrI	GCNGC	6 cut(s)	7, 243, 298, 430, 754, 757
PleI	GAGTC	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	511
PpuMI	RGGWCCY	1 cut(s)	716
PscI	ACATGT	1 cut(s)	672
Psp124BI	GAGCTC	1 cut(s)	472
Psp1406I	AACGTT	1 cut(s)	729
Psp5II	RGGWCCY	1 cut(s)	716
Psp6I	CCWGG	1 cut(s)	619
PspGI	CCWGG	1 cut(s)	619
PspN4I	GGNNCC	3 cut(s)	570, 637, 718
PspPI	GGNCC	2 cut(s)	716, 815
PspPPI	RGGWCCY	1 cut(s)	716
PsuI	RGATCY	1 cut(s)	225
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	2 cut(s)	406, 795
RsaNI	GTAC	2 cut(s)	405, 794
RseI	CAYNNNNRTG	1 cut(s)	326
SacI	GAGCTC	1 cut(s)	472
SapI	GCTCTTC	2 cut(s)	58, 223
SaqAI	TTAA	3 cut(s)	290, 539, 910
SatI	GCNGC	6 cut(s)	6, 242, 297, 429, 753, 756
Sau3AI	GATC	1 cut(s)	225
Sau96I	GGNCC	2 cut(s)	716, 815
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	1 cut(s)	621
SduI	GDGCHC	3 cut(s)	463, 472, 699
SfcI	CTRYAG	1 cut(s)	711
SfuI	TTCGAA	1 cut(s)	742
SinI	GGWCC	2 cut(s)	716, 815
SmiMI	CAYNNNNRTG	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	2 cut(s)	782, 881
SsiI	CCGC	8 cut(s)	49, 63, 84, 241, 257, 566, 753, 756
SstI	GAGCTC	1 cut(s)	472
StyD4I	CCNGG	1 cut(s)	619
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	3 cut(s)	127, 239, 732
TaqI	TCGA	3 cut(s)	127, 308, 742
TasI	AATT	2 cut(s)	782, 881
TauI	GCSGC	3 cut(s)	244, 755, 758
TfiI	GAWTC	6 cut(s)	108, 133, 482, 597, 705, 876
Tru1I	TTAA	3 cut(s)	290, 539, 910
Tru9I	TTAA	3 cut(s)	290, 539, 910
TseFI	GTSAC	1 cut(s)	504
TseI	GCWGC	3 cut(s)	5, 296, 428
Tsp45I	GTSAC	1 cut(s)	504
TspDTI	ATGAA	1 cut(s)	383
TspGWI	ACGGA	2 cut(s)	178, 409
VneI	GTGCAC	1 cut(s)	695
VpaK11BI	GGWCC	2 cut(s)	716, 815
XagI	CCTNNNNNAGG	1 cut(s)	743
XapI	RAATTY	1 cut(s)	782
XceI	RCATGY	2 cut(s)	499, 676
XmiI	GTMKAC	1 cut(s)	583
ZraI	GACGTC	2 cut(s)	125, 237
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.