Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001923

Physical Location & Seq

Genomic Coordinates Reverse (-)

19710369 .. 19712309

Gene Structure 1941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g21890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGATTCTCAGATCCGCCTTGGGCCGGGATGTGCCAATCGTAATTCCGTCGGTTCGCGTGGCGGAGAGGCTGTCGAGGAAGAAATCGGAGAGGTTCACTTACCTTGTCGCTGCCGTGATGTCCAGCTTTGGGATTACTTCCATGGCTGTCATGGCCGTTTACTACAGATTTTACTGGCAAATGGAGGGTGGGAATGTGCCTATGTCTGAAATGCTGGGTACATTTGCTCTATCTGTTGGTGCTGCTGTGGGAATGGAGTTTTGGGCAAGATGGGCACATAAAGCTCTCTGGCACGCTTCCTTATGGCATATGCACGAGTCGCACCACCGGCCTAGAGAAGGTCCGTTCGAGCTGAACGATGTGTTTGCGATAATCAACGCGGTTCCGGCAATCGCCCTCCTTAATTACGGTTTCTTCCACAAGGGCCTTGTTCCTGGTCTTTGTTTTGGTGCTGGCCTTGGAATTACGGTGTTTGGCATGGCGTATATGTTTGTCCACGATGGTCTTGTGCACAAAAGATTCCCAGTGGGGCCCATAGCCAACGTGCCGTATTTGAGAAAGGTTGCTGCGGCTCATCAGCTCCACCACTCAGAGAAATTCGACGGTGTCCCATATGGGTTGTTTCTTGGACCTAAGGAACTCGAAGAAGTGGGAGGACTAGAAGAGTTGGACAAGGAGATCAATAGAAGAATCAAAGCATACAAGGGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046148 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

238

Amino Acids

26.53

Weight (kDa)

9.3

Isoelectric Point (pI)

48.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	81 - 208	1.9e-14	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25700 AT4G25700 AT4G25700 AT5G52570 AT5G52570
fragaria_vesca	FvH4_5g03020 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220
malus_domestica	MD01G1208300.v1.1 MD06G1089200.v1.1 MD07G1278900.v1.1
prunus_persica	Prupe.1G173800_v2.0.a1 Prupe.2G300800_v2.0.a1 Prupe.5G105100_v2.0.a1 Prupe.5G133900_v2.0.a1 Prupe.5G201800_v2.0.a1 Prupe.6G049800_v2.0.a1 Prupe.7G160800_v2.0.a1 Prupe.7G160800_v2.0.a1
pyrus_communis	pycom01g21890 pycom06g08510 pycom07g25370
rosa_chinensis	RchiOBHm_Chr1g0378281 RchiOBHm_Chr7g0196841
rosa_laevigata	RLG00000003985 RLG00000026443
rosa_multiflora	Rmu_sc0001083.1_g000021 Rmu_sc0013545.1_g000006
rosa_roxburghii	Rroxscaffold_3G00258920 Rroxscaffold_4G00280530
rosa_rugosa	Rorug01G0407900 Rorug07G0036200 Rorug07G0036200
rosa_samantha	Rh1AG421600 Rh1BG387000 Rh1CG400500 Rh1DG418200 Rh7AG160500 Rh7BG162600 Rh7CG168900 Rh7DG162000
rosa_wichuraiana	Rw1G037580 Rw7G014030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	57, 380
AciI	CCGC	4 cut(s)	15, 62, 380, 569
AclWI	GGATC	1 cut(s)	6
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	596
AfaI	GTAC	1 cut(s)	220
AfiI	CCNNNNNNNGG	3 cut(s)	24, 129, 338
AjnI	CCWGG	1 cut(s)	433
AjuI	GAANNNNNNNTTGG	2 cut(s)	244, 276
AluBI	AGCT	4 cut(s)	126, 284, 352, 580
AluI	AGCT	4 cut(s)	126, 284, 352, 580
Alw21I	GWGCWC	1 cut(s)	513
Alw44I	GTGCAC	1 cut(s)	509
AlwI	GGATC	1 cut(s)	6
AoxI	GGCC	6 cut(s)	22, 153, 329, 424, 454, 530
ApaI	GGGCCC	1 cut(s)	534
ApaLI	GTGCAC	1 cut(s)	509
ApeKI	GCWGC	3 cut(s)	110, 242, 566
ApoI	RAATTY	1 cut(s)	596
AspS9I	GGNCC	6 cut(s)	22, 341, 424, 530, 531, 629
AsuC2I	CCSGG	1 cut(s)	26
AvaII	GGWCC	2 cut(s)	341, 629
AxyI	CCTNAGG	1 cut(s)	633
BaeGI	GKGCMC	3 cut(s)	277, 513, 534
BanII	GRGCYC	1 cut(s)	534
BauI	CACGAG	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	513
BbvI	GCAGC	3 cut(s)	97, 229, 553
BccI	CCATC	2 cut(s)	264, 494
BceAI	ACGGC	3 cut(s)	98, 140, 532
BcgI	CGANNNNNNTGC	2 cut(s)	347, 381
BciT130I	CCWGG	1 cut(s)	435
BcnI	CCSGG	1 cut(s)	26
BfaI	CTAG	2 cut(s)	333, 659
BfmI	CTRYAG	1 cut(s)	163
BisI	GCNGC	4 cut(s)	111, 243, 567, 570
BlsI	GCNGC	4 cut(s)	112, 244, 568, 571
Bme1390I	CCNGG	2 cut(s)	26, 435
Bme18I	GGWCC	2 cut(s)	341, 629
BmgT120I	GGNCC	6 cut(s)	22, 341, 424, 530, 531, 629
BmiI	GGNNCC	3 cut(s)	384, 531, 532
BmrFI	CCNGG	2 cut(s)	26, 435
BmrI	ACTGGG	1 cut(s)	518
BmuI	ACTGGG	1 cut(s)	518
BpuMI	CCSGG	1 cut(s)	26
BsaJI	CCNNGG	3 cut(s)	18, 141, 457
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 129, 338
Bse118I	RCCGGY	1 cut(s)	327
Bse1I	ACTGG	2 cut(s)	179, 524
Bse21I	CCTNAGG	1 cut(s)	633
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	3 cut(s)	18, 141, 457
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	3 cut(s)	24, 129, 338
BseMII	CTCAG	2 cut(s)	22, 603
BseNI	ACTGG	2 cut(s)	179, 524
BseSI	GKGCMC	3 cut(s)	277, 513, 534
BseXI	GCAGC	3 cut(s)	97, 229, 553
BseYI	CCCAGC	1 cut(s)	214
Bsh1236I	CGCG	2 cut(s)	57, 380
BshFI	GGCC	6 cut(s)	24, 155, 331, 426, 456, 532
BsiHKAI	GWGCWC	1 cut(s)	513
BsiSI	CCGG	3 cut(s)	25, 328, 386
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	3 cut(s)	24, 129, 338
BsmFI	GGGAC	1 cut(s)	593
BsnI	GGCC	6 cut(s)	24, 155, 331, 426, 456, 532
Bsp120I	GGGCCC	1 cut(s)	530
Bsp1286I	GDGCHC	3 cut(s)	277, 513, 534
Bsp143I	GATC	2 cut(s)	11, 678
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	4 cut(s)	15, 62, 380, 569
BspANI	GGCC	6 cut(s)	24, 155, 331, 426, 456, 532
BspCNI	CTCAG	2 cut(s)	21, 602
BspFNI	CGCG	2 cut(s)	57, 380
BspLI	GGNNCC	3 cut(s)	384, 531, 532
BspPI	GGATC	1 cut(s)	6
BsrFI	RCCGGY	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	179, 524
BssAI	RCCGGY	1 cut(s)	327
BssECI	CCNNGG	3 cut(s)	18, 141, 457
BssMI	GATC	2 cut(s)	11, 678
BssSI	CACGAG	1 cut(s)	314
BssT1I	CCWWGG	3 cut(s)	18, 141, 457
Bst2BI	CACGAG	1 cut(s)	314
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	3 cut(s)	410, 469, 605
Bst6I	CTCTTC	1 cut(s)	657
BstC8I	GCNNGC	2 cut(s)	294, 454
BstDEI	CTNAG	3 cut(s)	8, 589, 633
BstDSI	CCRYGG	1 cut(s)	141
BstENI	CCTNNNNNAGG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	34
BstFNI	CGCG	2 cut(s)	57, 380
BstKTI	GATC	2 cut(s)	14, 681
BstMBI	GATC	2 cut(s)	11, 678
BstMWI	GCNNNNNNNGC	6 cut(s)	152, 272, 281, 319, 328, 386
BstNI	CCWGG	1 cut(s)	435
BstSCI	CCNGG	2 cut(s)	24, 433
BstSFI	CTRYAG	1 cut(s)	163
BstSLI	GKGCMC	3 cut(s)	277, 513, 534
BstUI	CGCG	2 cut(s)	57, 380
BstV1I	GCAGC	3 cut(s)	97, 229, 553
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
Bsu36I	CCTNAGG	1 cut(s)	633
BsuRI	GGCC	6 cut(s)	24, 155, 331, 426, 456, 532
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	531
Cac8I	GCNNGC	2 cut(s)	294, 454
Cfr10I	RCCGGY	1 cut(s)	327
Cfr13I	GGNCC	6 cut(s)	22, 341, 424, 530, 531, 629
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	3 cut(s)	142, 151, 478
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	3 cut(s)	8, 589, 633
DpnI	GATC	2 cut(s)	13, 680
DpnII	GATC	2 cut(s)	11, 678
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	657
EarI	CTCTTC	1 cut(s)	657
EciI	GGCGGA	2 cut(s)	4, 77
Eco130I	CCWWGG	3 cut(s)	18, 141, 457
Eco24I	GRGCYC	1 cut(s)	534
Eco47I	GGWCC	2 cut(s)	341, 629
Eco81I	CCTNAGG	1 cut(s)	633
EcoNI	CCTNNNNNAGG	1 cut(s)	336
EcoO109I	RGGNCCY	2 cut(s)	424, 530
EcoRII	CCWGG	1 cut(s)	433
EcoT14I	CCWWGG	3 cut(s)	18, 141, 457
EcoT38I	GRGCYC	1 cut(s)	534
ErhI	CCWWGG	3 cut(s)	18, 141, 457
FaeI	CATG	3 cut(s)	145, 154, 481
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	3 cut(s)	141, 150, 477
FauNDI	CATATG	2 cut(s)	309, 613
Fnu4HI	GCNGC	4 cut(s)	111, 243, 567, 570
FokI	GGATG	1 cut(s)	41
FriOI	GRGCYC	1 cut(s)	534
Fsp4HI	GCNGC	4 cut(s)	111, 243, 567, 570
FspBI	CTAG	2 cut(s)	333, 659
GluI	GCNGC	4 cut(s)	111, 243, 567, 570
GsaI	CCCAGC	1 cut(s)	218
HaeIII	GGCC	6 cut(s)	24, 155, 331, 426, 456, 532
HapII	CCGG	3 cut(s)	25, 328, 386
Hin1II	CATG	3 cut(s)	145, 154, 481
HinfI	GANTC	4 cut(s)	4, 317, 519, 690
HpaII	CCGG	3 cut(s)	25, 328, 386
Hpy166II	GTNNAC	4 cut(s)	96, 160, 496, 511
Hpy188I	TCNGA	4 cut(s)	11, 88, 208, 592
Hpy8I	GTNNAC	4 cut(s)	96, 160, 496, 511
Hpy99I	CGWCG	2 cut(s)	52, 605
HpyAV	CCTTC	1 cut(s)	332
HpyCH4III	ACNGT	3 cut(s)	410, 469, 605
HpyCH4IV	ACGT	1 cut(s)	543
HpyCH4V	TGCA	2 cut(s)	313, 511
HpyF10VI	GCNNNNNNNGC	6 cut(s)	152, 272, 281, 319, 328, 386
HpyF3I	CTNAG	3 cut(s)	8, 589, 633
HpySE526I	ACGT	1 cut(s)	543
Hsp92II	CATG	3 cut(s)	145, 154, 481
Kzo9I	GATC	2 cut(s)	11, 678
LmnI	GCTCC	1 cut(s)	585
Lsp1109I	GCAGC	3 cut(s)	97, 229, 553
MaeI	CTAG	2 cut(s)	333, 659
MaeII	ACGT	1 cut(s)	543
MalI	GATC	2 cut(s)	13, 680
MboI	GATC	2 cut(s)	11, 678
MboII	GAAGA	5 cut(s)	91, 406, 656, 674, 699
MflI	RGATCY	1 cut(s)	11
MhlI	GDGCHC	3 cut(s)	277, 513, 534
MluCI	AATT	4 cut(s)	42, 403, 462, 596
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	648
MnlI	CCTC	6 cut(s)	60, 69, 84, 178, 407, 647
MseI	TTAA	1 cut(s)	402
MspI	CCGG	3 cut(s)	25, 328, 386
MspR9I	CCNGG	2 cut(s)	26, 435
MvaI	CCWGG	1 cut(s)	435
MvnI	CGCG	2 cut(s)	57, 380
MwoI	GCNNNNNNNGC	6 cut(s)	152, 272, 281, 319, 328, 386
NciI	CCSGG	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	141
NdeI	CATATG	2 cut(s)	309, 613
NdeII	GATC	2 cut(s)	11, 678
NlaIII	CATG	3 cut(s)	145, 154, 481
NlaIV	GGNNCC	3 cut(s)	384, 531, 532
PcsI	WCGNNNNNNNCGW	1 cut(s)	354
PfeI	GAWTC	3 cut(s)	4, 519, 690
PflFI	GACNNNGTC	1 cut(s)	605
PkrI	GCNGC	4 cut(s)	112, 244, 568, 571
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	433
PspFI	CCCAGC	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	3 cut(s)	384, 531, 532
PspOMI	GGGCCC	1 cut(s)	530
PspPI	GGNCC	6 cut(s)	22, 341, 424, 530, 531, 629
PsuI	RGATCY	1 cut(s)	11
PsyI	GACNNNGTC	1 cut(s)	605
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	4 cut(s)	111, 243, 567, 570
Sau3AI	GATC	2 cut(s)	11, 678
Sau96I	GGNCC	6 cut(s)	22, 341, 424, 530, 531, 629
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	2 cut(s)	26, 435
SduI	GDGCHC	3 cut(s)	277, 513, 534
SfcI	CTRYAG	1 cut(s)	163
SinI	GGWCC	2 cut(s)	341, 629
Sse9I	AATT	4 cut(s)	42, 403, 462, 596
SsiI	CCGC	4 cut(s)	15, 62, 380, 569
SspMI	CTAG	2 cut(s)	333, 659
StyD4I	CCNGG	2 cut(s)	24, 433
StyI	CCWWGG	3 cut(s)	18, 141, 457
TaaI	ACNGT	3 cut(s)	410, 469, 605
TaiI	ACGT	1 cut(s)	546
TaqI	TCGA	4 cut(s)	74, 348, 600, 642
TasI	AATT	4 cut(s)	42, 403, 462, 596
TauI	GCSGC	1 cut(s)	572
TfiI	GAWTC	3 cut(s)	4, 519, 690
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	1 cut(s)	531
TseI	GCWGC	3 cut(s)	110, 242, 566
TspGWI	ACGGA	2 cut(s)	36, 333
TspRI	CASTG	1 cut(s)	531
Tth111I	GACNNNGTC	1 cut(s)	605
VneI	GTGCAC	1 cut(s)	509
VpaK11BI	GGWCC	2 cut(s)	341, 629
XagI	CCTNNNNNAGG	1 cut(s)	336
XapI	RAATTY	1 cut(s)	596
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148
XspI	CTAG	2 cut(s)	333, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.