Rh7DG162000

Belongs to the sterol desaturase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001923
Physical Location & Seq
Forward (+)
14421906 .. 14424157
2252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG162000.1

Sequence Viewer

Length: 681 bp
ATGGCCACCGGAGTTTCAGTTGCCTCAATCCCAATATGGTACTGTTTCCGCCGAAACAATCTACTTACTCGAAAACCCATCTCCCAAACAAGCACTCCCTGTTTTGTTTTGGCTTCAGCAAAGAAGAGACACTTGGTTATGGAAAAGAGAACAGAGCATGAATTTACAGAGAAAAGCTTGAAACAAACAGAGAGAAGGAGTGTTATAACTCCAAGAGTTGCAGAGAGATTAGCAAGAAGGAAATCGGAGAGAAATACTTACCTTGTTGCTGCAATCATATCCAGCCTGGGAGTCACTTCAGCTGCTGCCATGGCTGTTTACTACAGATTTTCTTGGCAAACAGAGATTGGGGAGTTTCTTGTTCCAGAGATGTTGGGCACATTTTTGCTCTCTGTGGGCTCTGCTGTGGGGATGGAGTTTTGGGCAAGGTGGGCGCACAGAGCTCTGTGGCATGCCTCATTATGGCAGATGCATGAGTCTCACCATCGACCTAGGGATGGTCCTTTCGAGATTAACGACGTGTTTGCTACAATCAATGCTGCTCCTGCTATTGCTCTTCTCTCTTACGGTTTCTGTACCAAGGGTCTTTTTCCTGGACTATGTTTTGGTGCTGTAAGTGCCTATTCTTTTCAAATTTTGTGTTTTTCCGGTCAAAGCCCTAAATTTGGGATCGGCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
FA_hydroxylase

Protein Analysis

226

Amino Acids

25.41

Weight (kDa)

9.88

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_hydroxylase PF04116 135 - 218 3.3e-08 Fatty acid hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 206
AciI CCGC 1 cut(s) 49
AclWI GGATC 1 cut(s) 677
AcoI YGGCCR 2 cut(s) 3, 673
AcsI RAATTY 3 cut(s) 161, 633, 662
AcuI CTGAAG 2 cut(s) 99, 282
AfaI GTAC 2 cut(s) 41, 577
AfiI CCNNNNNNNGG 3 cut(s) 462, 497, 665
AflIII ACRYGT 1 cut(s) 519
AgsI TTSAA 2 cut(s) 181, 632
AjiI CACGTC 1 cut(s) 520
AjnI CCWGG 2 cut(s) 285, 592
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 3 cut(s) 177, 302, 443
AluI AGCT 3 cut(s) 177, 302, 443
Alw21I GWGCWC 1 cut(s) 445
Alw26I GTCTC 2 cut(s) 121, 483
AlwI GGATC 1 cut(s) 677
AlwNI CAGNNNCTG 1 cut(s) 305
AoxI GGCC 2 cut(s) 3, 673
ApeKI GCWGC 4 cut(s) 269, 302, 305, 539
ApoI RAATTY 3 cut(s) 161, 633, 662
AspA2I CCTAGG 1 cut(s) 491
AspLEI GCGC 1 cut(s) 436
AspS9I GGNCC 1 cut(s) 500
AsuHPI GGTGA 1 cut(s) 473
AvaII GGWCC 1 cut(s) 500
AvrII CCTAGG 1 cut(s) 491
BaeGI GKGCMC 1 cut(s) 380
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 401, 445
Bbv12I GWGCWC 1 cut(s) 445
BbvI GCAGC 4 cut(s) 256, 289, 292, 526
BccI CCATC 4 cut(s) 86, 406, 491, 492
BcgI CGANNNNNNTGC 2 cut(s) 506, 540
BciT130I CCWGG 2 cut(s) 287, 594
BcoDI GTCTC 2 cut(s) 121, 483
BfaI CTAG 1 cut(s) 492
BfmI CTRYAG 1 cut(s) 322
BisI GCNGC 4 cut(s) 270, 303, 306, 540
BlnI CCTAGG 1 cut(s) 491
BlsI GCNGC 4 cut(s) 271, 304, 307, 541
Bme1390I CCNGG 2 cut(s) 287, 594
Bme18I GGWCC 1 cut(s) 500
BmgBI CACGTC 1 cut(s) 520
BmgT120I GGNCC 1 cut(s) 500
BmrFI CCNGG 2 cut(s) 287, 594
BmsI GCATC 1 cut(s) 459
BsaJI CCNNGG 4 cut(s) 286, 309, 491, 579
BsaWI WCCGGW 2 cut(s) 8, 647
BsaXI ACNNNNNCTCC 3 cut(s) 33, 79, 109
Bsc4I CCNNNNNNNGG 3 cut(s) 462, 497, 665
BseBI CCWGG 2 cut(s) 287, 594
BseDI CCNNGG 4 cut(s) 286, 309, 491, 579
BseGI GGATG 2 cut(s) 417, 502
BseLI CCNNNNNNNGG 3 cut(s) 462, 497, 665
BseSI GKGCMC 1 cut(s) 380
BseX3I CGGCCG 1 cut(s) 673
BseXI GCAGC 4 cut(s) 256, 289, 292, 526
Bsh1285I CGRYCG 1 cut(s) 676
BshFI GGCC 2 cut(s) 5, 675
BsiEI CGRYCG 1 cut(s) 676
BsiHKAI GWGCWC 1 cut(s) 445
BsiSI CCGG 2 cut(s) 9, 648
BslI CCNNNNNNNGG 3 cut(s) 462, 497, 665
BsmAI GTCTC 2 cut(s) 121, 483
BsnI GGCC 2 cut(s) 5, 675
Bsp1286I GDGCHC 3 cut(s) 380, 401, 445
Bsp143I GATC 1 cut(s) 669
Bsp19I CCATGG 1 cut(s) 309
BspACI CCGC 1 cut(s) 49
BspANI GGCC 2 cut(s) 5, 675
BspPI GGATC 1 cut(s) 677
BspQI GCTCTTC 1 cut(s) 561
BssECI CCNNGG 4 cut(s) 286, 309, 491, 579
BssMI GATC 1 cut(s) 669
BssT1I CCWWGG 3 cut(s) 309, 491, 579
Bst2UI CCWGG 2 cut(s) 287, 594
Bst4CI ACNGT 2 cut(s) 44, 569
Bst6I CTCTTC 2 cut(s) 119, 561
BstC8I GCNNGC 1 cut(s) 453
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 2 cut(s) 417, 502
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 1 cut(s) 672
BstMAI GTCTC 2 cut(s) 121, 483
BstMBI GATC 1 cut(s) 669
BstMCI CGRYCG 1 cut(s) 676
BstMWI GCNNNNNNNGC 5 cut(s) 311, 431, 440, 545, 617
BstNI CCWGG 2 cut(s) 287, 594
BstNSI RCATGY 1 cut(s) 455
BstSCI CCNGG 2 cut(s) 285, 592
BstSFI CTRYAG 1 cut(s) 322
BstSLI GKGCMC 1 cut(s) 380
BstV1I GCAGC 4 cut(s) 256, 289, 292, 526
BstZI CGGCCG 1 cut(s) 673
BsuRI GGCC 2 cut(s) 5, 675
BtgI CCRYGG 1 cut(s) 309
BtrI CACGTC 1 cut(s) 520
BtsCI GGATG 2 cut(s) 417, 502
Cac8I GCNNGC 1 cut(s) 453
CaiI CAGNNNCTG 1 cut(s) 305
CfoI GCGC 1 cut(s) 436
Cfr13I GGNCC 1 cut(s) 500
Csp6I GTAC 2 cut(s) 40, 576
CviAII CATG 4 cut(s) 158, 310, 452, 473
CviQI GTAC 2 cut(s) 40, 576
DpnI GATC 1 cut(s) 671
DpnII GATC 1 cut(s) 669
EaeI YGGCCR 2 cut(s) 3, 673
EagI CGGCCG 1 cut(s) 673
Eam1104I CTCTTC 2 cut(s) 119, 561
EarI CTCTTC 2 cut(s) 119, 561
EciI GGCGGA 1 cut(s) 38
Ecl136II GAGCTC 1 cut(s) 443
EclXI CGGCCG 1 cut(s) 673
Eco130I CCWWGG 3 cut(s) 309, 491, 579
Eco24I GRGCYC 2 cut(s) 401, 445
Eco47I GGWCC 1 cut(s) 500
Eco52I CGGCCG 1 cut(s) 673
Eco53kI GAGCTC 1 cut(s) 443
Eco57I CTGAAG 2 cut(s) 99, 282
EcoICRI GAGCTC 1 cut(s) 443
EcoRII CCWGG 2 cut(s) 285, 592
EcoT14I CCWWGG 3 cut(s) 309, 491, 579
EcoT22I ATGCAT 1 cut(s) 474
EcoT38I GRGCYC 2 cut(s) 401, 445
ErhI CCWWGG 3 cut(s) 309, 491, 579
FaeI CATG 4 cut(s) 161, 313, 455, 476
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FatI CATG 4 cut(s) 157, 309, 451, 472
Fnu4HI GCNGC 4 cut(s) 270, 303, 306, 540
FokI GGATG 2 cut(s) 424, 509
FriOI GRGCYC 2 cut(s) 401, 445
Fsp4HI GCNGC 4 cut(s) 270, 303, 306, 540
FspBI CTAG 1 cut(s) 492
GlaI GCGC 1 cut(s) 435
GluI GCNGC 4 cut(s) 270, 303, 306, 540
HaeIII GGCC 2 cut(s) 5, 675
HapII CCGG 2 cut(s) 9, 648
HhaI GCGC 1 cut(s) 436
Hin1II CATG 4 cut(s) 161, 313, 455, 476
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 2 cut(s) 291, 476
HpaII CCGG 2 cut(s) 9, 648
HphI GGTGA 1 cut(s) 473
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 2 cut(s) 365, 508
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 1 cut(s) 521
HpyAV CCTTC 2 cut(s) 189, 231
HpyCH4III ACNGT 2 cut(s) 44, 569
HpyCH4IV ACGT 1 cut(s) 519
HpyCH4V TGCA 3 cut(s) 221, 272, 472
HpyF10VI GCNNNNNNNGC 5 cut(s) 311, 431, 440, 545, 617
HpySE526I ACGT 1 cut(s) 519
Hsp92II CATG 4 cut(s) 161, 313, 455, 476
HspAI GCGC 1 cut(s) 434
Kzo9I GATC 1 cut(s) 669
LguI GCTCTTC 1 cut(s) 561
LmnI GCTCC 1 cut(s) 547
Lsp1109I GCAGC 4 cut(s) 256, 289, 292, 526
LweI GCATC 1 cut(s) 459
MaeI CTAG 1 cut(s) 492
MaeII ACGT 1 cut(s) 519
MaeIII GTNAC 1 cut(s) 292
MalI GATC 1 cut(s) 671
MboI GATC 1 cut(s) 669
MboII GAAGA 2 cut(s) 136, 548
MhlI GDGCHC 3 cut(s) 380, 401, 445
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 161, 633, 662
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 300, 485
MnlI CCTC 2 cut(s) 34, 466
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 474
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 513
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 2 cut(s) 9, 648
MspR9I CCNGG 2 cut(s) 287, 594
MvaI CCWGG 2 cut(s) 287, 594
MwoI GCNNNNNNNGC 5 cut(s) 311, 431, 440, 545, 617
NcoI CCATGG 1 cut(s) 309
NdeII GATC 1 cut(s) 669
NlaIII CATG 4 cut(s) 161, 313, 455, 476
NmuCI GTSAC 1 cut(s) 292
NsiI ATGCAT 1 cut(s) 474
NspI RCATGY 1 cut(s) 455
PaeI GCATGC 1 cut(s) 455
PciSI GCTCTTC 1 cut(s) 561
PcsI WCGNNNNNNNCGW 1 cut(s) 513
PfoI TCCNGGA 1 cut(s) 592
PkrI GCNGC 4 cut(s) 271, 304, 307, 541
PleI GAGTC 2 cut(s) 299, 484
PpsI GAGTC 2 cut(s) 299, 484
PsiI TTATAA 1 cut(s) 206
Psp124BI GAGCTC 1 cut(s) 445
Psp6I CCWGG 2 cut(s) 285, 592
PspGI CCWGG 2 cut(s) 285, 592
PspPI GGNCC 1 cut(s) 500
PstNI CAGNNNCTG 1 cut(s) 305
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 2 cut(s) 41, 577
RsaNI GTAC 2 cut(s) 40, 576
SacI GAGCTC 1 cut(s) 445
SapI GCTCTTC 1 cut(s) 561
SaqAI TTAA 1 cut(s) 513
SatI GCNGC 4 cut(s) 270, 303, 306, 540
Sau3AI GATC 1 cut(s) 669
Sau96I GGNCC 1 cut(s) 500
SchI GAGTC 2 cut(s) 300, 485
ScrFI CCNGG 2 cut(s) 287, 594
SduI GDGCHC 3 cut(s) 380, 401, 445
SetI ASST 7 cut(s) 179, 264, 304, 431, 445, 493, 522
SfaNI GCATC 1 cut(s) 459
SfcI CTRYAG 1 cut(s) 322
SinI GGWCC 1 cut(s) 500
SphI GCATGC 1 cut(s) 455
Sse9I AATT 3 cut(s) 161, 633, 662
SsiI CCGC 1 cut(s) 49
SspMI CTAG 1 cut(s) 492
SstI GAGCTC 1 cut(s) 445
StyD4I CCNGG 2 cut(s) 285, 592
StyI CCWWGG 3 cut(s) 309, 491, 579
TaaI ACNGT 2 cut(s) 44, 569
TaiI ACGT 1 cut(s) 522
TaqI TCGA 3 cut(s) 70, 487, 507
TasI AATT 3 cut(s) 161, 633, 662
Tru1I TTAA 1 cut(s) 513
Tru9I TTAA 1 cut(s) 513
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 4 cut(s) 269, 302, 305, 539
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 1 cut(s) 174
VpaK11BI GGWCC 1 cut(s) 500
XapI RAATTY 3 cut(s) 161, 633, 662
XceI RCATGY 1 cut(s) 455
XmaJI CCTAGG 1 cut(s) 491
XspI CTAG 1 cut(s) 492
Zsp2I ATGCAT 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.