Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001923

Physical Location & Seq

Genomic Coordinates Reverse (-)

12794907 .. 12797901

Gene Structure 2995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G133900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGAGGACCAAAAGCAGAGTACCCATCTTGAGAATTGCACAGAAAGAGCCCAAGAGGCTGCTGATTCTCAGAACCCAATTGTAATACCGTCCGTACGTGTGGCTGAGAAGTTGTCCAGGAAGAAATCGGAGAGGTTCACTTATCTTGTTGCTGCGGTGATGTCCAGTTTTGGTATTACTTCCATGGCTGTCATGGCTGTTTATTACAGATTTTACTGGCAAATGGAGGGTGGGAATGTGCCTTTGTCTGAAATGTTGGGTACATTTGCTCTATCTGTTGGTGCTGCTGTGGGAATGGAGTTTTGGGCAAGATGGGCTCATAAAGCTCTCTGGCACGCTTATGGCATATGCACGAGTCTCACCACACAGACCCAGAGAAGGTCCATTCGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046148 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

132

Amino Acids

14.77

Weight (kDa)

9.03

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25700 AT4G25700 AT4G25700 AT5G52570 AT5G52570
fragaria_vesca	FvH4_5g03020 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220
malus_domestica	MD01G1208300.v1.1 MD06G1089200.v1.1 MD07G1278900.v1.1
prunus_persica	Prupe.1G173800_v2.0.a1 Prupe.2G300800_v2.0.a1 Prupe.5G105100_v2.0.a1 Prupe.5G133900_v2.0.a1 Prupe.5G201800_v2.0.a1 Prupe.6G049800_v2.0.a1 Prupe.7G160800_v2.0.a1 Prupe.7G160800_v2.0.a1
pyrus_communis	pycom01g21890 pycom06g08510 pycom07g25370
rosa_chinensis	RchiOBHm_Chr1g0378281 RchiOBHm_Chr7g0196841
rosa_laevigata	RLG00000003985 RLG00000026443
rosa_multiflora	Rmu_sc0001083.1_g000021 Rmu_sc0013545.1_g000006
rosa_roxburghii	Rroxscaffold_3G00258920 Rroxscaffold_4G00280530
rosa_rugosa	Rorug01G0407900 Rorug07G0036200 Rorug07G0036200
rosa_samantha	Rh1AG421600 Rh1BG387000 Rh1CG400500 Rh1DG418200 Rh7AG160500 Rh7BG162600 Rh7CG168900 Rh7DG162000
rosa_wichuraiana	Rw1G037580 Rw7G014030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	155
AfaI	GTAC	3 cut(s)	22, 96, 262
AfiI	CCNNNNNNNGG	1 cut(s)	378
AflIII	ACRYGT	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	116
AjuI	GAANNNNNNNTTGG	2 cut(s)	286, 318
AluBI	AGCT	2 cut(s)	326, 392
AluI	AGCT	2 cut(s)	326, 392
Alw26I	GTCTC	1 cut(s)	362
ApeKI	GCWGC	3 cut(s)	59, 152, 284
AspS9I	GGNCC	2 cut(s)	7, 381
AsuHPI	GGTGA	2 cut(s)	169, 352
AvaII	GGWCC	2 cut(s)	7, 381
BanII	GRGCYC	2 cut(s)	52, 319
BauI	CACGAG	1 cut(s)	352
BbvI	GCAGC	3 cut(s)	46, 139, 271
BccI	CCATC	2 cut(s)	33, 306
BciT130I	CCWGG	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	362
BglI	GCCNNNNNGGC	1 cut(s)	56
BisI	GCNGC	3 cut(s)	60, 153, 285
BlsI	GCNGC	3 cut(s)	61, 154, 286
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	2 cut(s)	7, 381
BmgT120I	GGNCC	2 cut(s)	7, 381
BmrFI	CCNGG	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	50
BsaAI	YACGTR	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	378
Bse1I	ACTGG	2 cut(s)	165, 221
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	378
BseMII	CTCAG	2 cut(s)	83, 96
BseNI	ACTGG	2 cut(s)	165, 221
BseXI	GCAGC	3 cut(s)	46, 139, 271
BsiWI	CGTACG	1 cut(s)	94
BslI	CCNNNNNNNGG	1 cut(s)	378
BsmAI	GTCTC	1 cut(s)	362
Bsp1286I	GDGCHC	2 cut(s)	52, 319
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	1 cut(s)	155
BspCNI	CTCAG	2 cut(s)	82, 97
BsrI	ACTGG	2 cut(s)	165, 221
BssECI	CCNNGG	1 cut(s)	183
BssSI	CACGAG	1 cut(s)	352
BssT1I	CCWWGG	1 cut(s)	183
Bst2BI	CACGAG	1 cut(s)	352
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	90
BstBAI	YACGTR	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	2 cut(s)	69, 105
BstDSI	CCRYGG	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	362
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 194, 314, 323
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	116
BstV1I	GCAGC	3 cut(s)	46, 139, 271
BtgI	CCRYGG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	336
Cfr13I	GGNCC	2 cut(s)	7, 381
Csp6I	GTAC	3 cut(s)	21, 95, 261
CviAII	CATG	2 cut(s)	184, 193
CviJI	RGCY	8 cut(s)	50, 59, 104, 188, 197, 317, 326, 392
CviKI_1	RGCY	8 cut(s)	50, 59, 104, 188, 197, 317, 326, 392
CviQI	GTAC	3 cut(s)	21, 95, 261
DdeI	CTNAG	2 cut(s)	69, 105
Eco130I	CCWWGG	1 cut(s)	183
Eco24I	GRGCYC	2 cut(s)	52, 319
Eco47I	GGWCC	2 cut(s)	7, 381
EcoRII	CCWGG	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	183
EcoT38I	GRGCYC	2 cut(s)	52, 319
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	2 cut(s)	187, 196
FaiI	YATR	6 cut(s)	185, 194, 321, 342, 347, 349
FatI	CATG	2 cut(s)	183, 192
FauNDI	CATATG	1 cut(s)	347
Fnu4HI	GCNGC	3 cut(s)	60, 153, 285
FriOI	GRGCYC	2 cut(s)	52, 319
Fsp4HI	GCNGC	3 cut(s)	60, 153, 285
GluI	GCNGC	3 cut(s)	60, 153, 285
Hin1II	CATG	2 cut(s)	187, 196
HinfI	GANTC	2 cut(s)	65, 355
HphI	GGTGA	2 cut(s)	169, 352
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	3 cut(s)	72, 130, 250
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	138
HpyAV	CCTTC	1 cut(s)	372
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	2 cut(s)	39, 351
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 194, 314, 323
HpyF3I	CTNAG	2 cut(s)	69, 105
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	2 cut(s)	187, 196
LpnPI	CCDG	6 cut(s)	103, 130, 178, 202, 316, 386
Lsp1109I	GCAGC	3 cut(s)	46, 139, 271
MaeII	ACGT	1 cut(s)	97
MboII	GAAGA	1 cut(s)	133
MfeI	CAATTG	1 cut(s)	78
MhlI	GDGCHC	2 cut(s)	52, 319
MluCI	AATT	2 cut(s)	34, 78
MlyI	GAGTC	1 cut(s)	364
MnlI	CCTC	3 cut(s)	49, 126, 220
MseI	TTAA	1 cut(s)	394
MslI	CAYNNNNRTG	1 cut(s)	339
MspR9I	CCNGG	1 cut(s)	118
MunI	CAATTG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	4 cut(s)	56, 194, 314, 323
NcoI	CCATGG	1 cut(s)	183
NdeI	CATATG	1 cut(s)	347
NlaIII	CATG	2 cut(s)	187, 196
PfeI	GAWTC	1 cut(s)	65
Pfl23II	CGTACG	1 cut(s)	94
PfoI	TCCNGGA	1 cut(s)	116
PkrI	GCNGC	3 cut(s)	61, 154, 286
PleI	GAGTC	1 cut(s)	363
PpsI	GAGTC	1 cut(s)	363
Ppu21I	YACGTR	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspLI	CGTACG	1 cut(s)	94
PspPI	GGNCC	2 cut(s)	7, 381
RsaI	GTAC	3 cut(s)	22, 96, 262
RsaNI	GTAC	3 cut(s)	21, 95, 261
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	394
SatI	GCNGC	3 cut(s)	60, 153, 285
Sau96I	GGNCC	2 cut(s)	7, 381
SchI	GAGTC	1 cut(s)	364
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	2 cut(s)	52, 319
SetI	ASST	5 cut(s)	100, 137, 328, 383, 394
SinI	GGWCC	2 cut(s)	7, 381
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	2 cut(s)	34, 78
SsiI	CCGC	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	116
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	90
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	1 cut(s)	388
TasI	AATT	2 cut(s)	34, 78
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	394
Tru9I	TTAA	1 cut(s)	394
TseI	GCWGC	3 cut(s)	59, 152, 284
TspGWI	ACGGA	1 cut(s)	82
VpaK11BI	GGWCC	2 cut(s)	7, 381
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.