Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001923

Physical Location & Seq

Genomic Coordinates Reverse (-)

22079569 .. 22081834

Gene Structure 2266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g30220.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCAGTCGGACTCTTCGCCGCCACAACCCCCACCGCCTTCCGCCTCATCCAATCCTCCTCCTACCTCCTCCCCAAACCCAACCCCACAGTCTTCTTCTCTCCCTCCCGCCAAAAAAACACAACCCTCTTACATAGGACTCGCCGAAAACTCTGCCTAACTGTCTACGTTGTCATGGAAGACCAAAAACGTAATACCACCGAAGTCGACACTTCCGATGAAATACCACAAGAGAGTAGTCCCAGTTCCGAGATCCCTATTGTGATTCCCTCCCTACGTGGCGCAGAGCGATTGGCCAAGAAGAAATCCGAGAGGTTCACTTATCTTGTTGCGGCTGTGATGTCTAGCTTTGGTATCACTTCCATGGCTGTCATGGCCGTTTACTACAGATTTTACTGGCAAATGGAGGGTGGGAATGTGCCTGTGTCTGAAATGTTCGGTACATTTGCTCTCTCAGTTGGAGCTGCTGTGGGGATGGAATTTTGGGCAAGATGGGCGCACAAAGCTCTATGGCATGCCTCACTATGGCATATGCATGAGTCCCACCACAAGCCTAGAGAAGGCCCATTTGAGCTCAACGATGTGTTTGCTATCATCAACGCAGTTCCAGCTATAGCTTTGCTCAACTATGGCTTCTTCCACAAAGGCTATGTCCCTGGCCTTTGTTTTGGTGCTGGTCTTGGAATTACAGTGTTTGGAATGGCGTACATGTTCGTCCACGATGGTCTAGTTCATAAAAGATTCCCCGTGGGGCCTATCGCCAACGTGCCCTATTTCAGAAAGGTTGCTGCAGCTCATCAGCTCCACCACTCAGAGAAATTCAAGGGTGTTCCATATGGTCTGTTTCTTGGTCCTCAGGAGGTTGAAGAAGTGGGAGGACTGGAAGAGCTGGAGAAGGAGATTGATAGGAGAATCAAAGCATACAAGAACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046148 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

312

Amino Acids

34.9

Weight (kDa)

9.18

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25700 AT4G25700 AT4G25700 AT5G52570 AT5G52570
fragaria_vesca	FvH4_5g03020 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220
malus_domestica	MD01G1208300.v1.1 MD06G1089200.v1.1 MD07G1278900.v1.1
prunus_persica	Prupe.1G173800_v2.0.a1 Prupe.2G300800_v2.0.a1 Prupe.5G105100_v2.0.a1 Prupe.5G133900_v2.0.a1 Prupe.5G201800_v2.0.a1 Prupe.6G049800_v2.0.a1 Prupe.7G160800_v2.0.a1 Prupe.7G160800_v2.0.a1
pyrus_communis	pycom01g21890 pycom06g08510 pycom07g25370
rosa_chinensis	RchiOBHm_Chr1g0378281 RchiOBHm_Chr7g0196841
rosa_laevigata	RLG00000003985 RLG00000026443
rosa_multiflora	Rmu_sc0001083.1_g000021 Rmu_sc0013545.1_g000006
rosa_roxburghii	Rroxscaffold_3G00258920 Rroxscaffold_4G00280530
rosa_rugosa	Rorug01G0407900 Rorug07G0036200 Rorug07G0036200
rosa_samantha	Rh1AG421600 Rh1BG387000 Rh1CG400500 Rh1DG418200 Rh7AG160500 Rh7BG162600 Rh7CG168900 Rh7DG162000
rosa_wichuraiana	Rw1G037580 Rw7G014030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	165, 207
AciI	CCGC	5 cut(s)	21, 36, 43, 109, 332
AclWI	GGATC	1 cut(s)	247
AcoI	YGGCCR	2 cut(s)	294, 375
AcsI	RAATTY	2 cut(s)	479, 818
AfaI	GTAC	2 cut(s)	442, 707
AfiI	CCNNNNNNNGG	2 cut(s)	525, 560
AflIII	ACRYGT	1 cut(s)	708
AgsI	TTSAA	2 cut(s)	823, 866
AjnI	CCWGG	1 cut(s)	655
AluBI	AGCT	9 cut(s)	348, 464, 506, 574, 611, 617, 794, 802, 889
AluI	AGCT	9 cut(s)	348, 464, 506, 574, 611, 617, 794, 802, 889
Alw21I	GWGCWC	1 cut(s)	576
AlwI	GGATC	1 cut(s)	247
AoxI	GGCC	5 cut(s)	294, 375, 562, 658, 752
ApeKI	GCWGC	3 cut(s)	464, 788, 791
ApoI	RAATTY	2 cut(s)	479, 818
ArsI	GACNNNNNNTTYG	2 cut(s)	636, 668
AspLEI	GCGC	2 cut(s)	284, 499
AspS9I	GGNCC	3 cut(s)	563, 752, 851
AvaII	GGWCC	1 cut(s)	851
AxyI	CCTNAGG	1 cut(s)	855
BaeGI	GKGCMC	1 cut(s)	771
BalI	TGGCCA	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	576
BbsI	GAAGAC	2 cut(s)	85, 186
Bbv12I	GWGCWC	1 cut(s)	576
BbvI	GCAGC	3 cut(s)	451, 775, 803
BccI	CCATC	3 cut(s)	469, 486, 716
BceAI	ACGGC	1 cut(s)	362
BcgI	CGANNNNNNTGC	4 cut(s)	135, 169, 569, 603
BciT130I	CCWGG	1 cut(s)	657
BfaI	CTAG	3 cut(s)	345, 555, 728
BfmI	CTRYAG	3 cut(s)	385, 612, 789
BisI	GCNGC	5 cut(s)	21, 333, 465, 789, 792
BlsI	GCNGC	5 cut(s)	22, 334, 466, 790, 793
Bme1390I	CCNGG	1 cut(s)	657
Bme18I	GGWCC	1 cut(s)	851
BmgT120I	GGNCC	3 cut(s)	563, 752, 851
BmiI	GGNNCC	1 cut(s)	753
BmrFI	CCNGG	1 cut(s)	657
BmrI	ACTGGG	1 cut(s)	237
BmuI	ACTGGG	1 cut(s)	237
BpiI	GAAGAC	2 cut(s)	85, 186
BpmI	CTGGAG	1 cut(s)	911
BsaAI	YACGTR	1 cut(s)	278
BsaJI	CCNNGG	3 cut(s)	363, 655, 747
BsaXI	ACNNNNNCTCC	2 cut(s)	453, 483
Bsc4I	CCNNNNNNNGG	2 cut(s)	525, 560
Bse1I	ACTGG	3 cut(s)	243, 401, 885
Bse21I	CCTNAGG	1 cut(s)	855
BseBI	CCWGG	1 cut(s)	657
BseDI	CCNNGG	3 cut(s)	363, 655, 747
BseGI	GGATG	2 cut(s)	48, 480
BseLI	CCNNNNNNNGG	2 cut(s)	525, 560
BseMII	CTCAG	3 cut(s)	468, 825, 869
BseNI	ACTGG	3 cut(s)	243, 401, 885
BseRI	GAGGAG	2 cut(s)	49, 59
BseSI	GKGCMC	1 cut(s)	771
BseXI	GCAGC	3 cut(s)	451, 775, 803
BshFI	GGCC	5 cut(s)	296, 377, 564, 660, 754
BsiHKAI	GWGCWC	1 cut(s)	576
BslFI	GGGAC	3 cut(s)	225, 526, 638
BslI	CCNNNNNNNGG	2 cut(s)	525, 560
BsmFI	GGGAC	3 cut(s)	225, 526, 638
BsnI	GGCC	5 cut(s)	296, 377, 564, 660, 754
Bsp1286I	GDGCHC	2 cut(s)	576, 771
Bsp143I	GATC	1 cut(s)	252
Bsp19I	CCATGG	1 cut(s)	363
BspACI	CCGC	5 cut(s)	21, 36, 43, 109, 332
BspANI	GGCC	5 cut(s)	296, 377, 564, 660, 754
BspCNI	CTCAG	3 cut(s)	467, 824, 868
BspLI	GGNNCC	1 cut(s)	753
BspMAI	CTGCAG	1 cut(s)	793
BspPI	GGATC	1 cut(s)	247
BspQI	GCTCTTC	1 cut(s)	879
BsrI	ACTGG	3 cut(s)	243, 401, 885
BssECI	CCNNGG	3 cut(s)	363, 655, 747
BssMI	GATC	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	657
Bst4CI	ACNGT	3 cut(s)	91, 163, 691
Bst6I	CTCTTC	2 cut(s)	20, 879
BstBAI	YACGTR	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	3 cut(s)	454, 811, 855
BstDSI	CCRYGG	2 cut(s)	363, 747
BstENI	CCTNNNNNAGG	1 cut(s)	558
BstF5I	GGATG	2 cut(s)	48, 480
BstHHI	GCGC	2 cut(s)	284, 499
BstKTI	GATC	1 cut(s)	255
BstMBI	GATC	1 cut(s)	252
BstMWI	GCNNNNNNNGC	4 cut(s)	374, 494, 503, 608
BstNI	CCWGG	1 cut(s)	657
BstNSI	RCATGY	2 cut(s)	518, 712
BstSCI	CCNGG	1 cut(s)	655
BstSFI	CTRYAG	3 cut(s)	385, 612, 789
BstSLI	GKGCMC	1 cut(s)	771
BstV1I	GCAGC	3 cut(s)	451, 775, 803
BstV2I	GAAGAC	2 cut(s)	85, 186
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
Bsu36I	CCTNAGG	1 cut(s)	855
BsuRI	GGCC	5 cut(s)	296, 377, 564, 660, 754
BtgI	CCRYGG	2 cut(s)	363, 747
BtsCI	GGATG	2 cut(s)	48, 480
BtsIMutI	CAGTG	1 cut(s)	696
Cac8I	GCNNGC	1 cut(s)	516
CfoI	GCGC	2 cut(s)	284, 499
Cfr13I	GGNCC	3 cut(s)	563, 752, 851
Csp6I	GTAC	2 cut(s)	441, 706
CviAII	CATG	6 cut(s)	175, 364, 373, 515, 536, 709
CviQI	GTAC	2 cut(s)	441, 706
DdeI	CTNAG	3 cut(s)	454, 811, 855
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
EaeI	YGGCCR	2 cut(s)	294, 375
Eam1104I	CTCTTC	2 cut(s)	20, 879
EarI	CTCTTC	2 cut(s)	20, 879
EciI	GGCGGA	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	574
Eco130I	CCWWGG	1 cut(s)	363
Eco24I	GRGCYC	1 cut(s)	576
Eco47I	GGWCC	1 cut(s)	851
Eco53kI	GAGCTC	1 cut(s)	574
Eco81I	CCTNAGG	1 cut(s)	855
EcoICRI	GAGCTC	1 cut(s)	574
EcoNI	CCTNNNNNAGG	1 cut(s)	558
EcoO109I	RGGNCCY	1 cut(s)	752
EcoRII	CCWGG	1 cut(s)	655
EcoT14I	CCWWGG	1 cut(s)	363
EcoT22I	ATGCAT	1 cut(s)	537
EcoT38I	GRGCYC	1 cut(s)	576
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	6 cut(s)	178, 367, 376, 518, 539, 712
FaqI	GGGAC	3 cut(s)	225, 526, 638
FatI	CATG	6 cut(s)	174, 363, 372, 514, 535, 708
FauI	CCCGC	1 cut(s)	116
FauNDI	CATATG	2 cut(s)	531, 835
FblI	GTMKAC	2 cut(s)	165, 207
Fnu4HI	GCNGC	5 cut(s)	21, 333, 465, 789, 792
FokI	GGATG	2 cut(s)	35, 487
FriOI	GRGCYC	1 cut(s)	576
Fsp4HI	GCNGC	5 cut(s)	21, 333, 465, 789, 792
FspBI	CTAG	3 cut(s)	345, 555, 728
GlaI	GCGC	2 cut(s)	283, 498
GluI	GCNGC	5 cut(s)	21, 333, 465, 789, 792
GsuI	CTGGAG	1 cut(s)	911
HaeIII	GGCC	5 cut(s)	296, 377, 564, 660, 754
HhaI	GCGC	2 cut(s)	284, 499
Hin1II	CATG	6 cut(s)	178, 367, 376, 518, 539, 712
Hin6I	GCGC	2 cut(s)	282, 497
HinP1I	GCGC	2 cut(s)	282, 497
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	6 cut(s)	12, 139, 265, 539, 741, 912
Hpy166II	GTNNAC	5 cut(s)	166, 208, 318, 382, 718
Hpy188I	TCNGA	7 cut(s)	11, 217, 250, 310, 430, 779, 814
Hpy188III	TCNNGA	1 cut(s)	857
Hpy8I	GTNNAC	5 cut(s)	166, 208, 318, 382, 718
HpyAV	CCTTC	3 cut(s)	49, 554, 889
HpyCH4III	ACNGT	3 cut(s)	91, 163, 691
HpyCH4IV	ACGT	4 cut(s)	168, 190, 277, 765
HpyCH4V	TGCA	2 cut(s)	535, 791
HpyF10VI	GCNNNNNNNGC	4 cut(s)	374, 494, 503, 608
HpyF3I	CTNAG	3 cut(s)	454, 811, 855
HpySE526I	ACGT	4 cut(s)	168, 190, 277, 765
Hsp92II	CATG	6 cut(s)	178, 367, 376, 518, 539, 712
HspAI	GCGC	2 cut(s)	282, 497
Kzo9I	GATC	1 cut(s)	252
LguI	GCTCTTC	1 cut(s)	879
LmnI	GCTCC	2 cut(s)	461, 807
Lsp1109I	GCAGC	3 cut(s)	451, 775, 803
MaeI	CTAG	3 cut(s)	345, 555, 728
MaeII	ACGT	4 cut(s)	168, 190, 277, 765
MalI	GATC	1 cut(s)	254
MboI	GATC	1 cut(s)	252
MboII	GAAGA	8 cut(s)	7, 85, 88, 191, 313, 628, 878, 896
MflI	RGATCY	1 cut(s)	252
MhlI	GDGCHC	2 cut(s)	576, 771
MlsI	TGGCCA	1 cut(s)	296
MluCI	AATT	3 cut(s)	479, 684, 818
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	3 cut(s)	6, 133, 548
MmeI	TCCRAC	1 cut(s)	439
Mox20I	TGGCCA	1 cut(s)	296
Mph1103I	ATGCAT	1 cut(s)	537
MscI	TGGCCA	1 cut(s)	296
MslI	CAYNNNNRTG	2 cut(s)	362, 534
Msp20I	TGGCCA	1 cut(s)	296
MspR9I	CCNGG	1 cut(s)	657
MvaI	CCWGG	1 cut(s)	657
MwoI	GCNNNNNNNGC	4 cut(s)	374, 494, 503, 608
NcoI	CCATGG	1 cut(s)	363
NdeI	CATATG	2 cut(s)	531, 835
NdeII	GATC	1 cut(s)	252
NlaIII	CATG	6 cut(s)	178, 367, 376, 518, 539, 712
NlaIV	GGNNCC	1 cut(s)	753
NsiI	ATGCAT	1 cut(s)	537
NspI	RCATGY	2 cut(s)	518, 712
PaeI	GCATGC	1 cut(s)	518
PciI	ACATGT	1 cut(s)	708
PciSI	GCTCTTC	1 cut(s)	879
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PfeI	GAWTC	3 cut(s)	265, 741, 912
PkrI	GCNGC	5 cut(s)	22, 334, 466, 790, 793
PleI	GAGTC	3 cut(s)	6, 133, 547
PpsI	GAGTC	3 cut(s)	6, 133, 547
Ppu21I	YACGTR	1 cut(s)	278
PscI	ACATGT	1 cut(s)	708
Psp124BI	GAGCTC	1 cut(s)	576
Psp6I	CCWGG	1 cut(s)	655
PspGI	CCWGG	1 cut(s)	655
PspN4I	GGNNCC	1 cut(s)	753
PspPI	GGNCC	3 cut(s)	563, 752, 851
PsrI	GAACNNNNNNTAC	2 cut(s)	229, 261
PstI	CTGCAG	1 cut(s)	793
PsuI	RGATCY	1 cut(s)	252
RsaI	GTAC	2 cut(s)	442, 707
RsaNI	GTAC	2 cut(s)	441, 706
RseI	CAYNNNNRTG	2 cut(s)	362, 534
SacI	GAGCTC	1 cut(s)	576
SalI	GTCGAC	1 cut(s)	206
SapI	GCTCTTC	1 cut(s)	879
SatI	GCNGC	5 cut(s)	21, 333, 465, 789, 792
Sau3AI	GATC	1 cut(s)	252
Sau96I	GGNCC	3 cut(s)	563, 752, 851
SchI	GAGTC	3 cut(s)	6, 133, 548
ScrFI	CCNGG	1 cut(s)	657
SduI	GDGCHC	2 cut(s)	576, 771
SfcI	CTRYAG	3 cut(s)	385, 612, 789
SinI	GGWCC	1 cut(s)	851
SmiMI	CAYNNNNRTG	2 cut(s)	362, 534
SphI	GCATGC	1 cut(s)	518
Sse9I	AATT	3 cut(s)	479, 684, 818
SsiI	CCGC	5 cut(s)	21, 36, 43, 109, 332
SspMI	CTAG	3 cut(s)	345, 555, 728
SstI	GAGCTC	1 cut(s)	576
StyD4I	CCNGG	1 cut(s)	655
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	3 cut(s)	91, 163, 691
TaiI	ACGT	4 cut(s)	171, 193, 280, 768
TaqI	TCGA	1 cut(s)	207
TasI	AATT	3 cut(s)	479, 684, 818
TauI	GCSGC	2 cut(s)	23, 335
TfiI	GAWTC	3 cut(s)	265, 741, 912
TscAI	CASTG	1 cut(s)	696
TseI	GCWGC	3 cut(s)	464, 788, 791
TspDTI	ATGAA	2 cut(s)	234, 722
TspRI	CASTG	1 cut(s)	696
VpaK11BI	GGWCC	1 cut(s)	851
XagI	CCTNNNNNAGG	1 cut(s)	558
XapI	RAATTY	2 cut(s)	479, 818
XceI	RCATGY	2 cut(s)	518, 712
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XmiI	GTMKAC	2 cut(s)	165, 207
XspI	CTAG	3 cut(s)	345, 555, 728
Zsp2I	ATGCAT	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.