Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001923

Physical Location & Seq

Genomic Coordinates Reverse (-)

55004215 .. 55005702

Gene Structure 1488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003985

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCCACCGGAGTTTCGGTTGCCTCAATCCCAATATGGTACTGTTTTGGCCGAAACAATCTACTTGCTCGAAAACCCATCTCCCAAACAAGTACCCGCTGTTTTGTTTTGGCTTCAGCAAAGAAGAGACACTTGGTTATGGAAAAGAGAACAGAGCATGAATTTACAGAGAAAAGCTTGGAACAAACAGGGAGAAGGAGTGTTATAACTCCAAGAGTTGCAGAGAGATTAGCAAGAAGGAAATCGGAGAGAAATACTTACCTTGTTGCTGCAATCATGTCGAGCCTGGGAGTCACTTCAGCTGCTGCCATGGCTGTTTACTACAGATTTTCTTGGCAAACAGAGATTGGGGAGTTTCTTGTTCCAGAGATGTTGGGCACATTTTTGCTTTCTGTGGGCTCTGCTGTGGGGATGGAGTTTTGGGCAAAGTGGGCGCACAGAGCTCTATGGCATGCCTCGTTATGGCACATGCATGAGTCTCACCATCGACCTAGGGATGGTCCTTTCGAGCTTAACGATGTGTTTGCTATAATCAATGCTGCTCCTGCTATTGCTCTTCTCTCTTACGGCTTCTTTACCAAGGGTCTTTTTCCTGGACTATGTTTTGGAGCTGGGCTAGGGATCACAGTTTTCGGGATGGCATACATGTTCGTGCACGATGGTCTCGTCCACCGTCGATTTCCAGTCGGGCCAATCGCAGACGTTCCTTATTTACAAAGAGTTGCTGCCGCCCACCAGGTTCACCATACATACATATTGAATGGAGTGCCGTATGGGTTGTTCTTGGGACCTAAGGAAATAGAAGAGGTTGGAGGCATGGAAGAATTAGAAAAGGAGATCAAGCGGAGAAGCACCAAGAGTACTATACCCAAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

293

Amino Acids

32.74

Weight (kDa)

9.62

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25700 AT4G25700 AT4G25700 AT5G52570 AT5G52570
fragaria_vesca	FvH4_5g03020 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220
malus_domestica	MD01G1208300.v1.1 MD06G1089200.v1.1 MD07G1278900.v1.1
prunus_persica	Prupe.1G173800_v2.0.a1 Prupe.2G300800_v2.0.a1 Prupe.5G105100_v2.0.a1 Prupe.5G133900_v2.0.a1 Prupe.5G201800_v2.0.a1 Prupe.6G049800_v2.0.a1 Prupe.7G160800_v2.0.a1 Prupe.7G160800_v2.0.a1
pyrus_communis	pycom01g21890 pycom06g08510 pycom07g25370
rosa_chinensis	RchiOBHm_Chr1g0378281 RchiOBHm_Chr7g0196841
rosa_laevigata	RLG00000003985 RLG00000026443
rosa_multiflora	Rmu_sc0001083.1_g000021 Rmu_sc0013545.1_g000006
rosa_roxburghii	Rroxscaffold_3G00258920 Rroxscaffold_4G00280530
rosa_rugosa	Rorug01G0407900 Rorug07G0036200 Rorug07G0036200
rosa_samantha	Rh1AG421600 Rh1BG387000 Rh1CG400500 Rh1DG418200 Rh7AG160500 Rh7BG162600 Rh7CG168900 Rh7DG162000
rosa_wichuraiana	Rw1G037580 Rw7G014030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	206
AciI	CCGC	3 cut(s)	97, 729, 844
AclWI	GGATC	1 cut(s)	629
AcoI	YGGCCR	2 cut(s)	3, 49
AcsI	RAATTY	1 cut(s)	161
AcuI	CTGAAG	2 cut(s)	99, 282
AfaI	GTAC	3 cut(s)	41, 94, 862
AfiI	CCNNNNNNNGG	2 cut(s)	462, 497
AflIII	ACRYGT	1 cut(s)	645
AgsI	TTSAA	1 cut(s)	760
AjnI	CCWGG	3 cut(s)	285, 592, 735
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	6 cut(s)	177, 302, 443, 511, 611, 876
AluI	AGCT	6 cut(s)	177, 302, 443, 511, 611, 876
Alw21I	GWGCWC	2 cut(s)	445, 657
Alw26I	GTCTC	3 cut(s)	121, 483, 668
Alw44I	GTGCAC	1 cut(s)	653
AlwI	GGATC	1 cut(s)	629
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	3 cut(s)	3, 49, 689
ApaLI	GTGCAC	1 cut(s)	653
ApeKI	GCWGC	5 cut(s)	269, 302, 305, 539, 725
ApoI	RAATTY	1 cut(s)	161
AspA2I	CCTAGG	1 cut(s)	491
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	3 cut(s)	500, 689, 788
AsuHPI	GGTGA	2 cut(s)	473, 734
AvaII	GGWCC	2 cut(s)	500, 788
AvrII	CCTAGG	1 cut(s)	491
AxyI	CCTNAGG	1 cut(s)	792
BaeGI	GKGCMC	2 cut(s)	380, 657
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	401, 445
Bbv12I	GWGCWC	2 cut(s)	445, 657
BbvI	GCAGC	5 cut(s)	256, 289, 292, 526, 712
BccI	CCATC	6 cut(s)	86, 406, 491, 492, 631, 653
BceAI	ACGGC	2 cut(s)	583, 754
BcgI	CGANNNNNNTGC	4 cut(s)	261, 295, 506, 540
BciT130I	CCWGG	3 cut(s)	287, 594, 737
BcoDI	GTCTC	3 cut(s)	121, 483, 668
BfaI	CTAG	2 cut(s)	492, 617
BfmI	CTRYAG	1 cut(s)	322
BisI	GCNGC	6 cut(s)	270, 303, 306, 540, 726, 729
BlnI	CCTAGG	1 cut(s)	491
BlsI	GCNGC	6 cut(s)	271, 304, 307, 541, 727, 730
BmcAI	AGTACT	1 cut(s)	862
Bme1390I	CCNGG	3 cut(s)	287, 594, 737
Bme18I	GGWCC	2 cut(s)	500, 788
BmgT120I	GGNCC	3 cut(s)	500, 689, 788
BmiI	GGNNCC	1 cut(s)	789
BmrFI	CCNGG	3 cut(s)	287, 594, 737
BsaI	GGTCTC	1 cut(s)	668
BsaJI	CCNNGG	4 cut(s)	286, 309, 491, 579
BsaWI	WCCGGW	1 cut(s)	8
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 184, 214
Bsc4I	CCNNNNNNNGG	2 cut(s)	462, 497
Bse1I	ACTGG	1 cut(s)	683
Bse21I	CCTNAGG	1 cut(s)	792
BseBI	CCWGG	3 cut(s)	287, 594, 737
BseDI	CCNNGG	4 cut(s)	286, 309, 491, 579
BseGI	GGATG	3 cut(s)	417, 502, 642
BseLI	CCNNNNNNNGG	2 cut(s)	462, 497
BseNI	ACTGG	1 cut(s)	683
BseSI	GKGCMC	2 cut(s)	380, 657
BseXI	GCAGC	5 cut(s)	256, 289, 292, 526, 712
BseYI	CCCAGC	1 cut(s)	611
BshFI	GGCC	3 cut(s)	5, 51, 691
BsiHKAI	GWGCWC	2 cut(s)	445, 657
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	801
BslI	CCNNNNNNNGG	2 cut(s)	462, 497
BsmAI	GTCTC	3 cut(s)	121, 483, 668
BsmFI	GGGAC	1 cut(s)	801
BsnI	GGCC	3 cut(s)	5, 51, 691
Bso31I	GGTCTC	1 cut(s)	668
Bsp1286I	GDGCHC	4 cut(s)	380, 401, 445, 657
Bsp143I	GATC	2 cut(s)	621, 837
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	3 cut(s)	97, 729, 844
BspANI	GGCC	3 cut(s)	5, 51, 691
BspLI	GGNNCC	1 cut(s)	789
BspPI	GGATC	1 cut(s)	629
BspQI	GCTCTTC	1 cut(s)	561
BspTNI	GGTCTC	1 cut(s)	668
BsrI	ACTGG	1 cut(s)	683
BssECI	CCNNGG	4 cut(s)	286, 309, 491, 579
BssMI	GATC	2 cut(s)	621, 837
BssT1I	CCWWGG	3 cut(s)	309, 491, 579
Bst2UI	CCWGG	3 cut(s)	287, 594, 737
Bst4CI	ACNGT	3 cut(s)	44, 628, 674
Bst6I	CTCTTC	3 cut(s)	119, 561, 798
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	1 cut(s)	792
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	3 cut(s)	417, 502, 642
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	2 cut(s)	624, 840
BstMAI	GTCTC	3 cut(s)	121, 483, 668
BstMBI	GATC	2 cut(s)	621, 837
BstMWI	GCNNNNNNNGC	4 cut(s)	311, 431, 440, 545
BstNI	CCWGG	3 cut(s)	287, 594, 737
BstNSI	RCATGY	3 cut(s)	455, 472, 649
BstSCI	CCNGG	3 cut(s)	285, 592, 735
BstSFI	CTRYAG	1 cut(s)	322
BstSLI	GKGCMC	2 cut(s)	380, 657
BstV1I	GCAGC	5 cut(s)	256, 289, 292, 526, 712
Bsu36I	CCTNAGG	1 cut(s)	792
BsuRI	GGCC	3 cut(s)	5, 51, 691
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	3 cut(s)	417, 502, 642
Cac8I	GCNNGC	1 cut(s)	453
CaiI	CAGNNNCTG	1 cut(s)	305
CfoI	GCGC	1 cut(s)	436
Cfr13I	GGNCC	3 cut(s)	500, 689, 788
CsiI	ACCWGGT	1 cut(s)	735
Csp6I	GTAC	3 cut(s)	40, 93, 861
CviAII	CATG	8 cut(s)	158, 277, 310, 452, 469, 473, 646, 817
CviQI	GTAC	3 cut(s)	40, 93, 861
DdeI	CTNAG	1 cut(s)	792
DpnI	GATC	2 cut(s)	623, 839
DpnII	GATC	2 cut(s)	621, 837
EaeI	YGGCCR	2 cut(s)	3, 49
Eam1104I	CTCTTC	3 cut(s)	119, 561, 798
EarI	CTCTTC	3 cut(s)	119, 561, 798
Ecl136II	GAGCTC	1 cut(s)	443
Eco130I	CCWWGG	3 cut(s)	309, 491, 579
Eco24I	GRGCYC	2 cut(s)	401, 445
Eco31I	GGTCTC	1 cut(s)	668
Eco47I	GGWCC	2 cut(s)	500, 788
Eco53kI	GAGCTC	1 cut(s)	443
Eco57I	CTGAAG	2 cut(s)	99, 282
Eco81I	CCTNAGG	1 cut(s)	792
EcoICRI	GAGCTC	1 cut(s)	443
EcoO109I	RGGNCCY	1 cut(s)	788
EcoRII	CCWGG	3 cut(s)	285, 592, 735
EcoT14I	CCWWGG	3 cut(s)	309, 491, 579
EcoT22I	ATGCAT	1 cut(s)	474
EcoT38I	GRGCYC	2 cut(s)	401, 445
ErhI	CCWWGG	3 cut(s)	309, 491, 579
FaeI	CATG	8 cut(s)	161, 280, 313, 455, 472, 476, 649, 820
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FaqI	GGGAC	1 cut(s)	801
FatI	CATG	8 cut(s)	157, 276, 309, 451, 468, 472, 645, 816
FauI	CCCGC	1 cut(s)	104
Fnu4HI	GCNGC	6 cut(s)	270, 303, 306, 540, 726, 729
FokI	GGATG	3 cut(s)	424, 509, 649
FriOI	GRGCYC	2 cut(s)	401, 445
Fsp4HI	GCNGC	6 cut(s)	270, 303, 306, 540, 726, 729
FspBI	CTAG	2 cut(s)	492, 617
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	6 cut(s)	270, 303, 306, 540, 726, 729
GsaI	CCCAGC	1 cut(s)	615
HaeIII	GGCC	3 cut(s)	5, 51, 691
HapII	CCGG	1 cut(s)	9
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	8 cut(s)	161, 280, 313, 455, 472, 476, 649, 820
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HindIII	AAGCTT	1 cut(s)	175
HinfI	GANTC	2 cut(s)	291, 476
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	2 cut(s)	473, 734
Hpy166II	GTNNAC	4 cut(s)	319, 655, 670, 742
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	2 cut(s)	365, 634
Hpy8I	GTNNAC	4 cut(s)	319, 655, 670, 742
Hpy99I	CGWCG	1 cut(s)	678
HpyAV	CCTTC	2 cut(s)	189, 231
HpyCH4III	ACNGT	3 cut(s)	44, 628, 674
HpyCH4IV	ACGT	1 cut(s)	702
HpyCH4V	TGCA	4 cut(s)	221, 272, 472, 655
HpyF10VI	GCNNNNNNNGC	4 cut(s)	311, 431, 440, 545
HpyF3I	CTNAG	1 cut(s)	792
HpySE526I	ACGT	1 cut(s)	702
Hsp92II	CATG	8 cut(s)	161, 280, 313, 455, 472, 476, 649, 820
HspAI	GCGC	1 cut(s)	434
Kzo9I	GATC	2 cut(s)	621, 837
LguI	GCTCTTC	1 cut(s)	561
LmnI	GCTCC	2 cut(s)	547, 608
Lsp1109I	GCAGC	5 cut(s)	256, 289, 292, 526, 712
MabI	ACCWGGT	1 cut(s)	735
MaeI	CTAG	2 cut(s)	492, 617
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	2 cut(s)	623, 839
MboI	GATC	2 cut(s)	621, 837
MboII	GAAGA	4 cut(s)	136, 548, 815, 833
MhlI	GDGCHC	4 cut(s)	380, 401, 445, 657
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	161, 824
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	300, 485
MmeI	TCCRAC	1 cut(s)	790
MnlI	CCTC	4 cut(s)	34, 466, 799, 806
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	474
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	513
MslI	CAYNNNNRTG	2 cut(s)	471, 650
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	99, 302
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	3 cut(s)	287, 594, 737
MvaI	CCWGG	3 cut(s)	287, 594, 737
MwoI	GCNNNNNNNGC	4 cut(s)	311, 431, 440, 545
NcoI	CCATGG	1 cut(s)	309
NdeII	GATC	2 cut(s)	621, 837
NlaIII	CATG	8 cut(s)	161, 280, 313, 455, 472, 476, 649, 820
NlaIV	GGNNCC	1 cut(s)	789
NmuCI	GTSAC	1 cut(s)	292
NsiI	ATGCAT	1 cut(s)	474
NspI	RCATGY	3 cut(s)	455, 472, 649
PaeI	GCATGC	1 cut(s)	455
PciI	ACATGT	1 cut(s)	645
PciSI	GCTCTTC	1 cut(s)	561
PcsI	WCGNNNNNNNCGW	2 cut(s)	513, 663
PfoI	TCCNGGA	1 cut(s)	592
PkrI	GCNGC	6 cut(s)	271, 304, 307, 541, 727, 730
PleI	GAGTC	2 cut(s)	299, 484
PpsI	GAGTC	2 cut(s)	299, 484
PpuMI	RGGWCCY	1 cut(s)	788
PscI	ACATGT	1 cut(s)	645
PsiI	TTATAA	1 cut(s)	206
Psp124BI	GAGCTC	1 cut(s)	445
Psp5II	RGGWCCY	1 cut(s)	788
Psp6I	CCWGG	3 cut(s)	285, 592, 735
PspFI	CCCAGC	1 cut(s)	611
PspGI	CCWGG	3 cut(s)	285, 592, 735
PspN4I	GGNNCC	1 cut(s)	789
PspPI	GGNCC	3 cut(s)	500, 689, 788
PspPPI	RGGWCCY	1 cut(s)	788
PsrI	GAACNNNNNNTAC	2 cut(s)	764, 796
PstNI	CAGNNNCTG	1 cut(s)	305
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	3 cut(s)	41, 94, 862
RsaNI	GTAC	3 cut(s)	40, 93, 861
RseI	CAYNNNNRTG	2 cut(s)	471, 650
SacI	GAGCTC	1 cut(s)	445
SapI	GCTCTTC	1 cut(s)	561
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	6 cut(s)	270, 303, 306, 540, 726, 729
Sau3AI	GATC	2 cut(s)	621, 837
Sau96I	GGNCC	3 cut(s)	500, 689, 788
ScaI	AGTACT	1 cut(s)	862
SchI	GAGTC	2 cut(s)	300, 485
ScrFI	CCNGG	3 cut(s)	287, 594, 737
SduI	GDGCHC	4 cut(s)	380, 401, 445, 657
SexAI	ACCWGGT	1 cut(s)	735
SfcI	CTRYAG	1 cut(s)	322
SinI	GGWCC	2 cut(s)	500, 788
SmiMI	CAYNNNNRTG	2 cut(s)	471, 650
SphI	GCATGC	1 cut(s)	455
Sse9I	AATT	2 cut(s)	161, 824
SsiI	CCGC	3 cut(s)	97, 729, 844
SspMI	CTAG	2 cut(s)	492, 617
SstI	GAGCTC	1 cut(s)	445
StyD4I	CCNGG	3 cut(s)	285, 592, 735
StyI	CCWWGG	3 cut(s)	309, 491, 579
TaaI	ACNGT	3 cut(s)	44, 628, 674
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	5 cut(s)	70, 281, 487, 507, 676
TasI	AATT	2 cut(s)	161, 824
TatI	WGTACW	1 cut(s)	860
TauI	GCSGC	1 cut(s)	731
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	5 cut(s)	269, 302, 305, 539, 725
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	1 cut(s)	174
VneI	GTGCAC	1 cut(s)	653
VpaK11BI	GGWCC	2 cut(s)	500, 788
XapI	RAATTY	1 cut(s)	161
XceI	RCATGY	3 cut(s)	455, 472, 649
XmaJI	CCTAGG	1 cut(s)	491
XspI	CTAG	2 cut(s)	492, 617
ZrmI	AGTACT	1 cut(s)	862
Zsp2I	ATGCAT	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.