Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001923

Physical Location & Seq

Genomic Coordinates Forward (+)

14593878 .. 14594375

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G173800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGCGACTGGACTCTTCGCAGCCACAAACCCCAACCCCATCCGTCTAATCCAATCCTCATACCTCACTTGCAAAGCCCCAAATCTGACCCCATTGCTATTCAATAAATCCAAACAAAAACAGCAACACATGGATGACTGGATTTCAAAGAACAGAGGACCAAGAACAGCAGCACATCGCTTCAAAACCTCCTTCCCAGAACTATTGTTCCTCATGGTTCCTCAAAGCCCAGCAAATCCATCTTCAATTCAGAACCATTGTTCATCATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

91

Amino Acids

10.08

Weight (kDa)

10.15

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25700 AT4G25700 AT4G25700 AT5G52570 AT5G52570
fragaria_vesca	FvH4_5g03020 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220
malus_domestica	MD01G1208300.v1.1 MD06G1089200.v1.1 MD07G1278900.v1.1
prunus_persica	Prupe.1G173800_v2.0.a1 Prupe.2G300800_v2.0.a1 Prupe.5G105100_v2.0.a1 Prupe.5G133900_v2.0.a1 Prupe.5G201800_v2.0.a1 Prupe.6G049800_v2.0.a1 Prupe.7G160800_v2.0.a1 Prupe.7G160800_v2.0.a1
pyrus_communis	pycom01g21890 pycom06g08510 pycom07g25370
rosa_chinensis	RchiOBHm_Chr1g0378281 RchiOBHm_Chr7g0196841
rosa_laevigata	RLG00000003985 RLG00000026443
rosa_multiflora	Rmu_sc0001083.1_g000021 Rmu_sc0013545.1_g000006
rosa_roxburghii	Rroxscaffold_3G00258920 Rroxscaffold_4G00280530
rosa_rugosa	Rorug01G0407900 Rorug07G0036200 Rorug07G0036200
rosa_samantha	Rh1AG421600 Rh1BG387000 Rh1CG400500 Rh1DG418200 Rh7AG160500 Rh7BG162600 Rh7CG168900 Rh7DG162000
rosa_wichuraiana	Rw1G037580 Rw7G014030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	271
AgsI	TTSAA	4 cut(s)	103, 147, 184, 246
AloI	GAACNNNNNNTCC	2 cut(s)	192, 224
ApeKI	GCWGC	2 cut(s)	20, 170
AspS9I	GGNCC	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	32, 182
BccI	CCATC	2 cut(s)	47, 247
BisI	GCNGC	2 cut(s)	21, 171
BlsI	GCNGC	2 cut(s)	22, 172
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	219
Bse1I	ACTGG	2 cut(s)	13, 143
Bse3DI	GCAATG	1 cut(s)	92
BseGI	GGATG	2 cut(s)	39, 139
BseMI	GCAATG	1 cut(s)	92
BseNI	ACTGG	2 cut(s)	13, 143
BseXI	GCAGC	2 cut(s)	32, 182
BseYI	CCCAGC	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	13, 143
Bst6I	CTCTTC	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	39, 139
BstV1I	GCAGC	2 cut(s)	32, 182
BtgZI	GCGATG	1 cut(s)	161
BtsCI	GGATG	2 cut(s)	39, 139
Cfr13I	GGNCC	1 cut(s)	158
CviAII	CATG	2 cut(s)	130, 214
CviJI	RGCY	3 cut(s)	23, 77, 228
CviKI_1	RGCY	3 cut(s)	23, 77, 228
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	158
FaeI	CATG	2 cut(s)	133, 217
FaiI	YATR	4 cut(s)	61, 131, 215, 271
FatI	CATG	2 cut(s)	129, 213
Fnu4HI	GCNGC	2 cut(s)	21, 171
FokI	GGATG	2 cut(s)	26, 146
Fsp4HI	GCNGC	2 cut(s)	21, 171
GluI	GCNGC	2 cut(s)	21, 171
GsaI	CCCAGC	1 cut(s)	233
Hin1II	CATG	2 cut(s)	133, 217
HinfI	GANTC	1 cut(s)	12
Hpy188I	TCNGA	2 cut(s)	87, 252
HpyAV	CCTTC	1 cut(s)	202
HpyCH4V	TGCA	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	133, 217
LpnPI	CCDG	3 cut(s)	124, 210, 243
Lsp1109I	GCAGC	2 cut(s)	32, 182
MboII	GAAGA	2 cut(s)	7, 234
MluCI	AATT	1 cut(s)	246
MlyI	GAGTC	1 cut(s)	6
MnlI	CCTC	6 cut(s)	67, 74, 149, 199, 221, 231
MslI	CAYNNNNRTG	1 cut(s)	132
NlaIII	CATG	2 cut(s)	133, 217
NlaIV	GGNNCC	1 cut(s)	219
PkrI	GCNGC	2 cut(s)	22, 172
PleI	GAGTC	1 cut(s)	6
PpsI	GAGTC	1 cut(s)	6
PsiI	TTATAA	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	132
SatI	GCNGC	2 cut(s)	21, 171
Sau96I	GGNCC	1 cut(s)	158
SchI	GAGTC	1 cut(s)	6
SetI	ASST	2 cut(s)	66, 191
SgeI	CNNG	8 cut(s)	21, 81, 142, 151, 174, 209, 226, 242
SinI	GGWCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	132
Sse9I	AATT	1 cut(s)	246
TasI	AATT	1 cut(s)	246
TseI	GCWGC	2 cut(s)	20, 170
TspDTI	ATGAA	1 cut(s)	252
TspGWI	ACGGA	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.