Rh7CG168900

Belongs to the sterol desaturase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001923
Physical Location & Seq
Forward (+)
14160150 .. 14162400
2251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG168900.1

Sequence Viewer

Length: 681 bp
ATGGCCACCGGAGTTTCGGTTGCCTCAATCCCAATATGGTACTGTTTCCGCCGAAACAATCTACTTACTCGAAAACCCATCTCCCAAACAAGCACCCCCTGTTTTGTTTTGGCTTCAGCAAAGAAGAGACACTTGGTTATGGAAAAGAGAACAGAGCATGAATTTACAGAGAAAAGCTTGGAACAAACAGAGAGAAGGAGTGTTATAACTCCAAGAGTTGCAGAGAGATTAGCAAGAAGGAAATCGGAGAGAAATACTTACCTTGTTGCTGCAATCATGTCCAGCCTGGGAGTCACTTCAGCTGCTGCCATGGCTGTTTACTACAGATTTTCTTGGCAAACAGAGATTGGGGAGTTTCTTGTTCCAGAGATGTTGGGCACATTTTTGCTCTCTGTGGGCTCTGCTGTGGGGATGGAGTTTTGGGCAAGGTGGGCGCACAGAGCTCTGTGGCATGCCTCATTATGGCAGATGCATGAGTCTCACCATCGACCTAGGGATGGTCCTTTCGAGATTAACGACGTGTTTGCTATAATCAATGCTGCTCCTGCTATTGCTCTTCTCTCTTACGGTTTCTGTACCAAGGGTCTTTTTCCTGGACTATGTTTTGGTGCTGTAAGTGCCTATTCTTTTCAAATTTTGTGTTTTTCCGGTCAAAGCCCTAAATTTGGGATCGGCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
FA_hydroxylase

Protein Analysis

226

Amino Acids

25.44

Weight (kDa)

9.71

Isoelectric Point (pI)

49.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_hydroxylase PF04116 135 - 218 2.6e-08 Fatty acid hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 206
AciI CCGC 1 cut(s) 49
AclWI GGATC 1 cut(s) 677
AcoI YGGCCR 2 cut(s) 3, 673
AcsI RAATTY 3 cut(s) 161, 633, 662
AcuI CTGAAG 2 cut(s) 99, 282
AfaI GTAC 2 cut(s) 41, 577
AfiI CCNNNNNNNGG 3 cut(s) 462, 497, 665
AflIII ACRYGT 1 cut(s) 519
AgsI TTSAA 1 cut(s) 632
AjiI CACGTC 1 cut(s) 520
AjnI CCWGG 2 cut(s) 285, 592
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 3 cut(s) 177, 302, 443
AluI AGCT 3 cut(s) 177, 302, 443
Alw21I GWGCWC 1 cut(s) 445
Alw26I GTCTC 2 cut(s) 121, 483
AlwI GGATC 1 cut(s) 677
AlwNI CAGNNNCTG 1 cut(s) 305
AoxI GGCC 2 cut(s) 3, 673
ApeKI GCWGC 4 cut(s) 269, 302, 305, 539
ApoI RAATTY 3 cut(s) 161, 633, 662
AspA2I CCTAGG 1 cut(s) 491
AspLEI GCGC 1 cut(s) 436
AspS9I GGNCC 1 cut(s) 500
AsuHPI GGTGA 1 cut(s) 473
AvaII GGWCC 1 cut(s) 500
AvrII CCTAGG 1 cut(s) 491
BaeGI GKGCMC 1 cut(s) 380
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 401, 445
Bbv12I GWGCWC 1 cut(s) 445
BbvI GCAGC 4 cut(s) 256, 289, 292, 526
BccI CCATC 4 cut(s) 86, 406, 491, 492
BcgI CGANNNNNNTGC 2 cut(s) 506, 540
BciT130I CCWGG 2 cut(s) 287, 594
BcoDI GTCTC 2 cut(s) 121, 483
BfaI CTAG 1 cut(s) 492
BfmI CTRYAG 1 cut(s) 322
BisI GCNGC 4 cut(s) 270, 303, 306, 540
BlnI CCTAGG 1 cut(s) 491
BlsI GCNGC 4 cut(s) 271, 304, 307, 541
Bme1390I CCNGG 2 cut(s) 287, 594
Bme18I GGWCC 1 cut(s) 500
BmgBI CACGTC 1 cut(s) 520
BmgT120I GGNCC 1 cut(s) 500
BmrFI CCNGG 2 cut(s) 287, 594
BmsI GCATC 1 cut(s) 459
BsaJI CCNNGG 4 cut(s) 286, 309, 491, 579
BsaWI WCCGGW 2 cut(s) 8, 647
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 3 cut(s) 462, 497, 665
BseBI CCWGG 2 cut(s) 287, 594
BseDI CCNNGG 4 cut(s) 286, 309, 491, 579
BseGI GGATG 2 cut(s) 417, 502
BseLI CCNNNNNNNGG 3 cut(s) 462, 497, 665
BseSI GKGCMC 1 cut(s) 380
BseX3I CGGCCG 1 cut(s) 673
BseXI GCAGC 4 cut(s) 256, 289, 292, 526
Bsh1285I CGRYCG 1 cut(s) 676
BshFI GGCC 2 cut(s) 5, 675
BsiEI CGRYCG 1 cut(s) 676
BsiHKAI GWGCWC 1 cut(s) 445
BsiSI CCGG 2 cut(s) 9, 648
BslI CCNNNNNNNGG 3 cut(s) 462, 497, 665
BsmAI GTCTC 2 cut(s) 121, 483
BsnI GGCC 2 cut(s) 5, 675
Bsp1286I GDGCHC 3 cut(s) 380, 401, 445
Bsp143I GATC 1 cut(s) 669
Bsp19I CCATGG 1 cut(s) 309
BspACI CCGC 1 cut(s) 49
BspANI GGCC 2 cut(s) 5, 675
BspPI GGATC 1 cut(s) 677
BspQI GCTCTTC 1 cut(s) 561
BssECI CCNNGG 4 cut(s) 286, 309, 491, 579
BssMI GATC 1 cut(s) 669
BssT1I CCWWGG 3 cut(s) 309, 491, 579
Bst2UI CCWGG 2 cut(s) 287, 594
Bst4CI ACNGT 2 cut(s) 44, 569
Bst6I CTCTTC 2 cut(s) 119, 561
BstC8I GCNNGC 1 cut(s) 453
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 2 cut(s) 417, 502
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 1 cut(s) 672
BstMAI GTCTC 2 cut(s) 121, 483
BstMBI GATC 1 cut(s) 669
BstMCI CGRYCG 1 cut(s) 676
BstMWI GCNNNNNNNGC 5 cut(s) 311, 431, 440, 545, 617
BstNI CCWGG 2 cut(s) 287, 594
BstNSI RCATGY 1 cut(s) 455
BstSCI CCNGG 2 cut(s) 285, 592
BstSFI CTRYAG 1 cut(s) 322
BstSLI GKGCMC 1 cut(s) 380
BstV1I GCAGC 4 cut(s) 256, 289, 292, 526
BstZI CGGCCG 1 cut(s) 673
BsuRI GGCC 2 cut(s) 5, 675
BtgI CCRYGG 1 cut(s) 309
BtrI CACGTC 1 cut(s) 520
BtsCI GGATG 2 cut(s) 417, 502
Cac8I GCNNGC 1 cut(s) 453
CaiI CAGNNNCTG 1 cut(s) 305
CfoI GCGC 1 cut(s) 436
Cfr13I GGNCC 1 cut(s) 500
Csp6I GTAC 2 cut(s) 40, 576
CviAII CATG 5 cut(s) 158, 277, 310, 452, 473
CviQI GTAC 2 cut(s) 40, 576
DpnI GATC 1 cut(s) 671
DpnII GATC 1 cut(s) 669
EaeI YGGCCR 2 cut(s) 3, 673
EagI CGGCCG 1 cut(s) 673
Eam1104I CTCTTC 2 cut(s) 119, 561
EarI CTCTTC 2 cut(s) 119, 561
EciI GGCGGA 1 cut(s) 38
Ecl136II GAGCTC 1 cut(s) 443
EclXI CGGCCG 1 cut(s) 673
Eco130I CCWWGG 3 cut(s) 309, 491, 579
Eco24I GRGCYC 2 cut(s) 401, 445
Eco47I GGWCC 1 cut(s) 500
Eco52I CGGCCG 1 cut(s) 673
Eco53kI GAGCTC 1 cut(s) 443
Eco57I CTGAAG 2 cut(s) 99, 282
EcoICRI GAGCTC 1 cut(s) 443
EcoRII CCWGG 2 cut(s) 285, 592
EcoT14I CCWWGG 3 cut(s) 309, 491, 579
EcoT22I ATGCAT 1 cut(s) 474
EcoT38I GRGCYC 2 cut(s) 401, 445
ErhI CCWWGG 3 cut(s) 309, 491, 579
FaeI CATG 5 cut(s) 161, 280, 313, 455, 476
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FatI CATG 5 cut(s) 157, 276, 309, 451, 472
Fnu4HI GCNGC 4 cut(s) 270, 303, 306, 540
FokI GGATG 2 cut(s) 424, 509
FriOI GRGCYC 2 cut(s) 401, 445
Fsp4HI GCNGC 4 cut(s) 270, 303, 306, 540
FspBI CTAG 1 cut(s) 492
GlaI GCGC 1 cut(s) 435
GluI GCNGC 4 cut(s) 270, 303, 306, 540
HaeIII GGCC 2 cut(s) 5, 675
HapII CCGG 2 cut(s) 9, 648
HhaI GCGC 1 cut(s) 436
Hin1II CATG 5 cut(s) 161, 280, 313, 455, 476
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 2 cut(s) 291, 476
HpaII CCGG 2 cut(s) 9, 648
HphI GGTGA 1 cut(s) 473
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 2 cut(s) 365, 508
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 1 cut(s) 521
HpyAV CCTTC 2 cut(s) 189, 231
HpyCH4III ACNGT 2 cut(s) 44, 569
HpyCH4IV ACGT 1 cut(s) 519
HpyCH4V TGCA 3 cut(s) 221, 272, 472
HpyF10VI GCNNNNNNNGC 5 cut(s) 311, 431, 440, 545, 617
HpySE526I ACGT 1 cut(s) 519
Hsp92II CATG 5 cut(s) 161, 280, 313, 455, 476
HspAI GCGC 1 cut(s) 434
Kzo9I GATC 1 cut(s) 669
LguI GCTCTTC 1 cut(s) 561
LmnI GCTCC 1 cut(s) 547
Lsp1109I GCAGC 4 cut(s) 256, 289, 292, 526
LweI GCATC 1 cut(s) 459
MaeI CTAG 1 cut(s) 492
MaeII ACGT 1 cut(s) 519
MaeIII GTNAC 1 cut(s) 292
MalI GATC 1 cut(s) 671
MboI GATC 1 cut(s) 669
MboII GAAGA 2 cut(s) 136, 548
MhlI GDGCHC 3 cut(s) 380, 401, 445
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 161, 633, 662
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 300, 485
MnlI CCTC 2 cut(s) 34, 466
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 474
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 513
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 2 cut(s) 9, 648
MspR9I CCNGG 2 cut(s) 287, 594
MvaI CCWGG 2 cut(s) 287, 594
MwoI GCNNNNNNNGC 5 cut(s) 311, 431, 440, 545, 617
NcoI CCATGG 1 cut(s) 309
NdeII GATC 1 cut(s) 669
NlaIII CATG 5 cut(s) 161, 280, 313, 455, 476
NmuCI GTSAC 1 cut(s) 292
NsiI ATGCAT 1 cut(s) 474
NspI RCATGY 1 cut(s) 455
PaeI GCATGC 1 cut(s) 455
PciSI GCTCTTC 1 cut(s) 561
PcsI WCGNNNNNNNCGW 1 cut(s) 513
PfoI TCCNGGA 1 cut(s) 592
PkrI GCNGC 4 cut(s) 271, 304, 307, 541
PleI GAGTC 2 cut(s) 299, 484
PpsI GAGTC 2 cut(s) 299, 484
PsiI TTATAA 1 cut(s) 206
Psp124BI GAGCTC 1 cut(s) 445
Psp6I CCWGG 2 cut(s) 285, 592
PspGI CCWGG 2 cut(s) 285, 592
PspPI GGNCC 1 cut(s) 500
PstNI CAGNNNCTG 1 cut(s) 305
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 2 cut(s) 41, 577
RsaNI GTAC 2 cut(s) 40, 576
SacI GAGCTC 1 cut(s) 445
SapI GCTCTTC 1 cut(s) 561
SaqAI TTAA 1 cut(s) 513
SatI GCNGC 4 cut(s) 270, 303, 306, 540
Sau3AI GATC 1 cut(s) 669
Sau96I GGNCC 1 cut(s) 500
SchI GAGTC 2 cut(s) 300, 485
ScrFI CCNGG 2 cut(s) 287, 594
SduI GDGCHC 3 cut(s) 380, 401, 445
SetI ASST 7 cut(s) 179, 264, 304, 431, 445, 493, 522
SfaNI GCATC 1 cut(s) 459
SfcI CTRYAG 1 cut(s) 322
SinI GGWCC 1 cut(s) 500
SphI GCATGC 1 cut(s) 455
Sse9I AATT 3 cut(s) 161, 633, 662
SsiI CCGC 1 cut(s) 49
SspMI CTAG 1 cut(s) 492
SstI GAGCTC 1 cut(s) 445
StyD4I CCNGG 2 cut(s) 285, 592
StyI CCWWGG 3 cut(s) 309, 491, 579
TaaI ACNGT 2 cut(s) 44, 569
TaiI ACGT 1 cut(s) 522
TaqI TCGA 3 cut(s) 70, 487, 507
TasI AATT 3 cut(s) 161, 633, 662
Tru1I TTAA 1 cut(s) 513
Tru9I TTAA 1 cut(s) 513
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 4 cut(s) 269, 302, 305, 539
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 1 cut(s) 174
VpaK11BI GGWCC 1 cut(s) 500
XapI RAATTY 3 cut(s) 161, 633, 662
XceI RCATGY 1 cut(s) 455
XmaJI CCTAGG 1 cut(s) 491
XspI CTAG 1 cut(s) 492
Zsp2I ATGCAT 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.