Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001923

Physical Location & Seq

Genomic Coordinates Reverse (-)

51445456 .. 51447971

Gene Structure 2516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG387000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCGGTCGGACTCTTCGCCGCCACAACCCCCACCGCCTTCCGCCTCATCCAATCCTCTTACCTCCTCCCCAAACCAAACCCGACCGTCTTCTTCCCTCCCTCGAATCTCCAAAAAACAACAATCCTACATCGGACTCGGAGAAAGCTGTGTCTCACCGTCTACGTTGTCATGGAGGACCAAAAACGAAGTACTGCTACCCACGTCGACAGTTCCGAGGAAATACCACAAGACGGTGCCAATTCTGAGATCCCAATTGTGATTCCGTCGGTACGGGGCGCCGAGCGATTGGCCCGGAAGAGATCCGAGAGGTTCACTTATCTTGTCGCAGCTGTCATGTCTAGCTTTGGTATCACTTCCATGGCTGTCATGGCTGTTTATTACAGATTTTACTGGCAAATGGAGGGTGGGAATGTGCCTGTGTCTGAAATGTTCGGTACATTTGCTCTCTCAGTTGGTGCTGCTGTAAGTAACAAGCTCACTAATTTACTCTTAATTTGGGGAAAGCTTACCAAATTGAGCTTAAATTTTGATGGAGTTTTCTATCTTTTTAGGTGGGGATGGAATTTTGGGCAAGATGGGCACACAAAGCTCTGTGGCACGCTTCACTATGGCATATGCATGAGGTTTGCTTCAAACTTTGTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046148 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

216

Amino Acids

24.23

Weight (kDa)

9.68

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25700 AT4G25700 AT4G25700 AT5G52570 AT5G52570
fragaria_vesca	FvH4_5g03020 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220
malus_domestica	MD01G1208300.v1.1 MD06G1089200.v1.1 MD07G1278900.v1.1
prunus_persica	Prupe.1G173800_v2.0.a1 Prupe.2G300800_v2.0.a1 Prupe.5G105100_v2.0.a1 Prupe.5G133900_v2.0.a1 Prupe.5G201800_v2.0.a1 Prupe.6G049800_v2.0.a1 Prupe.7G160800_v2.0.a1 Prupe.7G160800_v2.0.a1
pyrus_communis	pycom01g21890 pycom06g08510 pycom07g25370
rosa_chinensis	RchiOBHm_Chr1g0378281 RchiOBHm_Chr7g0196841
rosa_laevigata	RLG00000003985 RLG00000026443
rosa_multiflora	Rmu_sc0001083.1_g000021 Rmu_sc0013545.1_g000006
rosa_roxburghii	Rroxscaffold_3G00258920 Rroxscaffold_4G00280530
rosa_rugosa	Rorug01G0407900 Rorug07G0036200 Rorug07G0036200
rosa_samantha	Rh1AG421600 Rh1BG387000 Rh1CG400500 Rh1DG418200 Rh7AG160500 Rh7BG162600 Rh7CG168900 Rh7DG162000
rosa_wichuraiana	Rw1G037580 Rw7G014030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	236, 278
AccI	GTMKAC	2 cut(s)	162, 207
AciI	CCGC	4 cut(s)	5, 21, 36, 43
AclWI	GGATC	2 cut(s)	244, 297
AcsI	RAATTY	2 cut(s)	526, 565
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	3 cut(s)	193, 273, 439
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	636
AjiI	CACGTC	1 cut(s)	205
AluBI	AGCT	7 cut(s)	148, 332, 345, 478, 508, 522, 592
AluI	AGCT	7 cut(s)	148, 332, 345, 478, 508, 522, 592
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	2 cut(s)	244, 297
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	2 cut(s)	329, 461
ApoI	RAATTY	2 cut(s)	526, 565
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	2 cut(s)	178, 292
AsuC2I	CCSGG	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	178
BaeGI	GKGCMC	1 cut(s)	585
BanI	GGYRCC	2 cut(s)	236, 278
BarI	GAAGNNNNNNTAC	2 cut(s)	181, 213
BbsI	GAAGAC	1 cut(s)	82
BbvI	GCAGC	2 cut(s)	341, 448
BccI	CCATC	3 cut(s)	527, 555, 572
BcnI	CCSGG	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	1 cut(s)	342
BfoI	RGCGCY	1 cut(s)	282
BisI	GCNGC	3 cut(s)	21, 330, 462
BlsI	GCNGC	3 cut(s)	22, 331, 463
BmcAI	AGTACT	1 cut(s)	193
Bme1390I	CCNGG	1 cut(s)	295
Bme18I	GGWCC	1 cut(s)	178
BmgBI	CACGTC	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	178, 292
BmiI	GGNNCC	2 cut(s)	238, 280
BmrFI	CCNGG	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	82
BpuMI	CCSGG	1 cut(s)	295
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	216, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	398
BseDI	CCNNGG	2 cut(s)	216, 360
BseGI	GGATG	2 cut(s)	48, 566
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	2 cut(s)	237, 465
BseNI	ACTGG	1 cut(s)	398
BseRI	GAGGAG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	585
BseXI	GCAGC	2 cut(s)	341, 448
Bsh1285I	CGRYCG	2 cut(s)	9, 87
BshFI	GGCC	1 cut(s)	293
BshNI	GGYRCC	2 cut(s)	236, 278
BsiEI	CGRYCG	2 cut(s)	9, 87
BsiSI	CCGG	1 cut(s)	295
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp143I	GATC	2 cut(s)	249, 302
Bsp19I	CCATGG	1 cut(s)	360
BspACI	CCGC	4 cut(s)	5, 21, 36, 43
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	2 cut(s)	238, 464
BspLI	GGNNCC	2 cut(s)	238, 280
BspPI	GGATC	2 cut(s)	244, 297
BspT107I	GGYRCC	2 cut(s)	236, 278
BsrI	ACTGG	1 cut(s)	398
BssECI	CCNNGG	2 cut(s)	216, 360
BssMI	GATC	2 cut(s)	249, 302
BssNI	GRCGYC	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	360
Bst4CI	ACNGT	4 cut(s)	88, 160, 212, 236
Bst6I	CTCTTC	2 cut(s)	20, 293
BstACI	GRCGYC	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	602
BstDEI	CTNAG	2 cut(s)	246, 451
BstDSI	CCRYGG	1 cut(s)	360
BstF5I	GGATG	2 cut(s)	48, 566
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	2 cut(s)	252, 305
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	2 cut(s)	249, 302
BstMCI	CGRYCG	2 cut(s)	9, 87
BstMWI	GCNNNNNNNGC	3 cut(s)	371, 580, 589
BstSCI	CCNGG	1 cut(s)	293
BstSLI	GKGCMC	1 cut(s)	585
BstV1I	GCAGC	2 cut(s)	341, 448
BstV2I	GAAGAC	1 cut(s)	82
BstX2I	RGATCY	2 cut(s)	249, 302
BstYI	RGATCY	2 cut(s)	249, 302
BsuRI	GGCC	1 cut(s)	293
BtgI	CCRYGG	1 cut(s)	360
BtrI	CACGTC	1 cut(s)	205
BtsCI	GGATG	2 cut(s)	48, 566
Cac8I	GCNNGC	1 cut(s)	602
CfoI	GCGC	1 cut(s)	281
Cfr13I	GGNCC	2 cut(s)	178, 292
Csp6I	GTAC	3 cut(s)	192, 272, 438
CviAII	CATG	5 cut(s)	172, 337, 361, 370, 622
CviQI	GTAC	3 cut(s)	192, 272, 438
DdeI	CTNAG	2 cut(s)	246, 451
DinI	GGCGCC	1 cut(s)	280
DpnI	GATC	2 cut(s)	251, 304
DpnII	GATC	2 cut(s)	249, 302
Eam1104I	CTCTTC	2 cut(s)	20, 293
EarI	CTCTTC	2 cut(s)	20, 293
EciI	GGCGGA	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	360
EcoT22I	ATGCAT	1 cut(s)	623
EgeI	GGCGCC	1 cut(s)	280
EheI	GGCGCC	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	5 cut(s)	175, 340, 364, 373, 625
FaiI	YATR	8 cut(s)	173, 338, 362, 371, 612, 617, 619, 623
FatI	CATG	5 cut(s)	171, 336, 360, 369, 621
FauNDI	CATATG	1 cut(s)	617
FblI	GTMKAC	2 cut(s)	162, 207
Fnu4HI	GCNGC	3 cut(s)	21, 330, 462
FokI	GGATG	2 cut(s)	35, 573
Fsp4HI	GCNGC	3 cut(s)	21, 330, 462
FspBI	CTAG	1 cut(s)	342
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	3 cut(s)	21, 330, 462
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	1 cut(s)	295
HhaI	GCGC	1 cut(s)	281
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	5 cut(s)	175, 340, 364, 373, 625
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	4 cut(s)	12, 106, 136, 262
HpaII	CCGG	1 cut(s)	295
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	3 cut(s)	163, 208, 315
Hpy188I	TCNGA	7 cut(s)	11, 135, 141, 217, 247, 307, 427
Hpy8I	GTNNAC	3 cut(s)	163, 208, 315
Hpy99I	CGWCG	2 cut(s)	209, 271
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	4 cut(s)	88, 160, 212, 236
HpyCH4IV	ACGT	2 cut(s)	165, 204
HpyCH4V	TGCA	1 cut(s)	621
HpyF10VI	GCNNNNNNNGC	3 cut(s)	371, 580, 589
HpyF3I	CTNAG	2 cut(s)	246, 451
HpySE526I	ACGT	2 cut(s)	165, 204
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	5 cut(s)	175, 340, 364, 373, 625
HspAI	GCGC	1 cut(s)	279
KasI	GGCGCC	1 cut(s)	278
Kzo9I	GATC	2 cut(s)	249, 302
LpnPI	CCDG	3 cut(s)	308, 379, 432
Lsp1109I	GCAGC	2 cut(s)	341, 448
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	2 cut(s)	165, 204
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	2 cut(s)	251, 304
MboI	GATC	2 cut(s)	249, 302
MboII	GAAGA	4 cut(s)	7, 82, 85, 310
MfeI	CAATTG	1 cut(s)	255
MflI	RGATCY	2 cut(s)	249, 302
MhlI	GDGCHC	1 cut(s)	585
MluCI	AATT	7 cut(s)	241, 255, 484, 495, 515, 526, 565
Mly113I	GGCGCC	1 cut(s)	279
MlyI	GAGTC	2 cut(s)	6, 130
Mph1103I	ATGCAT	1 cut(s)	623
MseI	TTAA	2 cut(s)	494, 524
MslI	CAYNNNNRTG	2 cut(s)	359, 620
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	1 cut(s)	295
MspR9I	CCNGG	1 cut(s)	295
MunI	CAATTG	1 cut(s)	255
MwoI	GCNNNNNNNGC	3 cut(s)	371, 580, 589
NarI	GGCGCC	1 cut(s)	279
NciI	CCSGG	1 cut(s)	295
NcoI	CCATGG	1 cut(s)	360
NdeI	CATATG	1 cut(s)	617
NdeII	GATC	2 cut(s)	249, 302
NlaIII	CATG	5 cut(s)	175, 340, 364, 373, 625
NlaIV	GGNNCC	2 cut(s)	238, 280
NmeAIII	GCCGAG	1 cut(s)	307
NsiI	ATGCAT	1 cut(s)	623
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	106, 262
PkrI	GCNGC	3 cut(s)	22, 331, 463
PleI	GAGTC	2 cut(s)	6, 130
PluTI	GGCGCC	1 cut(s)	282
PpsI	GAGTC	2 cut(s)	6, 130
PspN4I	GGNNCC	2 cut(s)	238, 280
PspPI	GGNCC	2 cut(s)	178, 292
PsuI	RGATCY	2 cut(s)	249, 302
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	3 cut(s)	193, 273, 439
RsaNI	GTAC	3 cut(s)	192, 272, 438
RseI	CAYNNNNRTG	2 cut(s)	359, 620
SalI	GTCGAC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	494, 524
SatI	GCNGC	3 cut(s)	21, 330, 462
Sau3AI	GATC	2 cut(s)	249, 302
Sau96I	GGNCC	2 cut(s)	178, 292
ScaI	AGTACT	1 cut(s)	193
SchI	GAGTC	2 cut(s)	6, 130
ScrFI	CCNGG	1 cut(s)	295
SduI	GDGCHC	1 cut(s)	585
SfoI	GGCGCC	1 cut(s)	280
SinI	GGWCC	1 cut(s)	178
SmiMI	CAYNNNNRTG	2 cut(s)	359, 620
Sse9I	AATT	7 cut(s)	241, 255, 484, 495, 515, 526, 565
SsiI	CCGC	4 cut(s)	5, 21, 36, 43
SspDI	GGCGCC	1 cut(s)	278
SspMI	CTAG	1 cut(s)	342
StyD4I	CCNGG	1 cut(s)	293
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	4 cut(s)	88, 160, 212, 236
TaiI	ACGT	2 cut(s)	168, 207
TaqI	TCGA	2 cut(s)	104, 207
TasI	AATT	7 cut(s)	241, 255, 484, 495, 515, 526, 565
TatI	WGTACW	1 cut(s)	191
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	2 cut(s)	106, 262
Tru1I	TTAA	2 cut(s)	494, 524
Tru9I	TTAA	2 cut(s)	494, 524
TseI	GCWGC	2 cut(s)	329, 461
TspGWI	ACGGA	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	178
XapI	RAATTY	2 cut(s)	526, 565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	367
XmiI	GTMKAC	2 cut(s)	162, 207
XspI	CTAG	1 cut(s)	342
ZrmI	AGTACT	1 cut(s)	193
Zsp2I	ATGCAT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.