Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001923

Physical Location & Seq

Genomic Coordinates Forward (+)

16243377 .. 16245301

Gene Structure 1925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G201800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTCCAGCTTTGGTATTACTCCCATGGCTGTCATGGCCGTTTATTACAGCTTTGGTATTACTGGTATTACCCATCTTGAGAATTGCACAGAAAAAGCCCAAGAGGCTGCTGATTCTCGGAACCCAATTGTAATTCCGTCCGTACGTGTGGCTGAGAAGTTGTCCAGGAAGAAATCGGAGAGGTTCACTTATCTTGTTGCTGCGGTGATGTCCAGCTTTGGTATTACTTCCATGGCTGTCATGGCTGTTTATTACAGATTTTACTGGCAAATGGAGGGTGGGAATGTGCCTTTGTCTGAAATGTTGGGTACATTTGCTCTATCTGTTGGTGCTGCTGTGGGAATGGAGTTTTGGGCAAGATGGGCTCATAAAGCTCTCTGGCACGCTTATGGCATATGCACGAGTCTCACCACACAGACCCAGAGAAGGTCCATTCGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046148 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

148

Amino Acids

16.35

Weight (kDa)

9.43

Isoelectric Point (pI)

43.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25700 AT4G25700 AT4G25700 AT5G52570 AT5G52570
fragaria_vesca	FvH4_5g03020 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220 FvH4_7g30220
malus_domestica	MD01G1208300.v1.1 MD06G1089200.v1.1 MD07G1278900.v1.1
prunus_persica	Prupe.1G173800_v2.0.a1 Prupe.2G300800_v2.0.a1 Prupe.5G105100_v2.0.a1 Prupe.5G133900_v2.0.a1 Prupe.5G201800_v2.0.a1 Prupe.6G049800_v2.0.a1 Prupe.7G160800_v2.0.a1 Prupe.7G160800_v2.0.a1
pyrus_communis	pycom01g21890 pycom06g08510 pycom07g25370
rosa_chinensis	RchiOBHm_Chr1g0378281 RchiOBHm_Chr7g0196841
rosa_laevigata	RLG00000003985 RLG00000026443
rosa_multiflora	Rmu_sc0001083.1_g000021 Rmu_sc0013545.1_g000006
rosa_roxburghii	Rroxscaffold_3G00258920 Rroxscaffold_4G00280530
rosa_rugosa	Rorug01G0407900 Rorug07G0036200 Rorug07G0036200
rosa_samantha	Rh1AG421600 Rh1BG387000 Rh1CG400500 Rh1DG418200 Rh7AG160500 Rh7BG162600 Rh7CG168900 Rh7DG162000
rosa_wichuraiana	Rw1G037580 Rw7G014030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	203
AcoI	YGGCCR	1 cut(s)	36
AfaI	GTAC	2 cut(s)	144, 310
AfiI	CCNNNNNNNGG	1 cut(s)	426
AflIII	ACRYGT	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	164
AjuI	GAANNNNNNNTTGG	2 cut(s)	334, 366
AluBI	AGCT	5 cut(s)	9, 51, 216, 374, 440
AluI	AGCT	5 cut(s)	9, 51, 216, 374, 440
Alw26I	GTCTC	1 cut(s)	410
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	3 cut(s)	107, 200, 332
AspS9I	GGNCC	1 cut(s)	429
AsuHPI	GGTGA	2 cut(s)	217, 400
AvaII	GGWCC	1 cut(s)	429
BanII	GRGCYC	1 cut(s)	367
BauI	CACGAG	1 cut(s)	400
BbvI	GCAGC	3 cut(s)	94, 187, 319
BccI	CCATC	2 cut(s)	81, 354
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	410
BglI	GCCNNNNNGGC	1 cut(s)	104
BisI	GCNGC	3 cut(s)	108, 201, 333
BlsI	GCNGC	3 cut(s)	109, 202, 334
Bme1390I	CCNGG	1 cut(s)	166
Bme18I	GGWCC	1 cut(s)	429
BmgT120I	GGNCC	1 cut(s)	429
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	1 cut(s)	166
BpuEI	CTTGAG	1 cut(s)	98
BsaAI	YACGTR	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	24, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	426
Bse1I	ACTGG	2 cut(s)	67, 269
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	2 cut(s)	24, 231
BseLI	CCNNNNNNNGG	1 cut(s)	426
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	2 cut(s)	67, 269
BseXI	GCAGC	3 cut(s)	94, 187, 319
BshFI	GGCC	1 cut(s)	38
BsiWI	CGTACG	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	426
BsmAI	GTCTC	1 cut(s)	410
BsnI	GGCC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp19I	CCATGG	2 cut(s)	24, 231
BspACI	CCGC	1 cut(s)	203
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	122
BsrI	ACTGG	2 cut(s)	67, 269
BssECI	CCNNGG	2 cut(s)	24, 231
BssSI	CACGAG	1 cut(s)	400
BssT1I	CCWWGG	2 cut(s)	24, 231
Bst2BI	CACGAG	1 cut(s)	400
Bst2UI	CCWGG	1 cut(s)	166
BstBAI	YACGTR	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	1 cut(s)	153
BstDSI	CCRYGG	2 cut(s)	24, 231
BstMAI	GTCTC	1 cut(s)	410
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 104, 242, 362, 371
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstV1I	GCAGC	3 cut(s)	94, 187, 319
BsuRI	GGCC	1 cut(s)	38
BtgI	CCRYGG	2 cut(s)	24, 231
Cac8I	GCNNGC	1 cut(s)	384
Cfr13I	GGNCC	1 cut(s)	429
Csp6I	GTAC	2 cut(s)	143, 309
CviAII	CATG	4 cut(s)	25, 34, 232, 241
CviQI	GTAC	2 cut(s)	143, 309
DdeI	CTNAG	1 cut(s)	153
EaeI	YGGCCR	1 cut(s)	36
Eco130I	CCWWGG	2 cut(s)	24, 231
Eco24I	GRGCYC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	429
EcoRII	CCWGG	1 cut(s)	164
EcoT14I	CCWWGG	2 cut(s)	24, 231
EcoT38I	GRGCYC	1 cut(s)	367
ErhI	CCWWGG	2 cut(s)	24, 231
FaeI	CATG	4 cut(s)	28, 37, 235, 244
FaiI	YATR	8 cut(s)	26, 35, 233, 242, 369, 390, 395, 397
FatI	CATG	4 cut(s)	24, 33, 231, 240
FauNDI	CATATG	1 cut(s)	395
Fnu4HI	GCNGC	3 cut(s)	108, 201, 333
FriOI	GRGCYC	1 cut(s)	367
Fsp4HI	GCNGC	3 cut(s)	108, 201, 333
GluI	GCNGC	3 cut(s)	108, 201, 333
HaeIII	GGCC	1 cut(s)	38
Hin1II	CATG	4 cut(s)	28, 37, 235, 244
HinfI	GANTC	2 cut(s)	113, 403
HphI	GGTGA	2 cut(s)	217, 400
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	3 cut(s)	120, 178, 298
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	1 cut(s)	186
HpyAV	CCTTC	1 cut(s)	420
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	2 cut(s)	87, 399
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 104, 242, 362, 371
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	4 cut(s)	28, 37, 235, 244
LpnPI	CCDG	8 cut(s)	19, 48, 151, 178, 226, 250, 364, 434
Lsp1109I	GCAGC	3 cut(s)	94, 187, 319
MaeII	ACGT	1 cut(s)	145
MboII	GAAGA	1 cut(s)	181
MfeI	CAATTG	1 cut(s)	126
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	3 cut(s)	82, 126, 132
MlyI	GAGTC	1 cut(s)	412
MnlI	CCTC	3 cut(s)	97, 174, 268
MseI	TTAA	1 cut(s)	442
MslI	CAYNNNNRTG	1 cut(s)	387
MspR9I	CCNGG	1 cut(s)	166
MunI	CAATTG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	5 cut(s)	35, 104, 242, 362, 371
NcoI	CCATGG	2 cut(s)	24, 231
NdeI	CATATG	1 cut(s)	395
NlaIII	CATG	4 cut(s)	28, 37, 235, 244
NlaIV	GGNNCC	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	113
Pfl23II	CGTACG	1 cut(s)	142
PfoI	TCCNGGA	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	109, 202, 334
PleI	GAGTC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	411
Ppu21I	YACGTR	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspLI	CGTACG	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	122
PspPI	GGNCC	1 cut(s)	429
RsaI	GTAC	2 cut(s)	144, 310
RsaNI	GTAC	2 cut(s)	143, 309
RseI	CAYNNNNRTG	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	442
SatI	GCNGC	3 cut(s)	108, 201, 333
Sau96I	GGNCC	1 cut(s)	429
SchI	GAGTC	1 cut(s)	412
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	8 cut(s)	11, 53, 148, 185, 218, 376, 431, 442
SinI	GGWCC	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	3 cut(s)	82, 126, 132
SsiI	CCGC	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	164
StyI	CCWWGG	2 cut(s)	24, 231
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	1 cut(s)	436
TasI	AATT	3 cut(s)	82, 126, 132
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	442
Tru9I	TTAA	1 cut(s)	442
TseI	GCWGC	3 cut(s)	107, 200, 332
TspGWI	ACGGA	2 cut(s)	126, 130
VpaK11BI	GGWCC	1 cut(s)	429
XcmI	CCANNNNNNNNNTGG	2 cut(s)	31, 238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.